Wall clock time and date at job start Mon Mar 30 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99809 * 3 2 1 6 6 H 1.48498 * 109.47206 * 59.99794 * 3 2 1 7 7 C 1.39723 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99658 * 179.97438 * 7 2 1 9 9 C 1.41224 * 120.00120 * 0.28313 * 7 2 1 10 10 C 1.39091 * 126.44219 * 179.72183 * 9 7 2 11 11 N 1.36101 * 106.36950 * 179.97438 * 10 9 7 12 12 C 1.46504 * 126.10694 * 180.02562 * 11 10 9 13 13 C 1.53005 * 117.49782 * 8.58931 * 12 11 10 14 14 C 1.52995 * 60.00201 * 252.51669 * 13 12 11 15 15 C 1.35959 * 107.78324 * 359.97438 * 11 10 9 16 16 C 1.50698 * 125.20411 * 180.02562 * 15 11 10 17 17 C 1.54264 * 110.03647 * 237.91463 * 16 15 11 18 18 C 1.54969 * 104.16004 * 217.13425 * 17 16 15 19 19 C 1.54892 * 102.77491 * 37.88877 * 18 17 16 20 20 C 1.53872 * 110.03362 * 120.69355 * 16 15 11 21 21 N 1.30154 * 109.59637 * 359.72706 * 15 11 10 22 22 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 23 23 H 1.08001 * 126.81133 * 359.97438 * 10 9 7 24 24 H 1.08994 * 115.55189 * 154.30413 * 12 11 10 25 25 H 1.09002 * 117.50039 * 0.02562 * 13 12 11 26 26 H 1.09002 * 117.49580 * 145.02466 * 13 12 11 27 27 H 1.08998 * 117.49927 * 252.51472 * 14 13 12 28 28 H 1.09001 * 117.49753 * 107.48952 * 14 13 12 29 29 H 1.08999 * 110.01488 * 359.30601 * 16 15 11 30 30 H 1.09000 * 110.48265 * 335.78366 * 17 16 15 31 31 H 1.08996 * 110.49042 * 98.42567 * 17 16 15 32 32 H 1.08990 * 110.71784 * 279.57129 * 18 17 16 33 33 H 1.09001 * 110.91622 * 156.29314 * 18 17 16 34 34 H 1.09004 * 110.48187 * 203.40148 * 19 18 17 35 35 H 1.08997 * 110.60119 * 80.81713 * 19 18 17 36 36 H 1.09003 * 110.03314 * 238.57239 * 20 16 15 37 37 H 1.08999 * 110.03181 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 3.7042 1.3463 -0.0006 5 1 1.8855 2.3963 -1.2126 6 1 1.8855 2.3964 1.2125 7 6 2.0087 -1.2101 0.0005 8 1 3.0887 -1.2100 0.0001 9 6 1.3026 -2.4331 -0.0050 10 6 1.8585 -3.7081 -0.0106 11 7 0.8148 -4.5816 -0.0140 12 6 0.9124 -6.0433 -0.0197 13 6 2.2985 -6.6596 0.1805 14 6 1.6360 -6.6983 -1.1980 15 6 -0.3345 -3.8553 -0.0099 16 6 -1.7268 -4.4321 -0.0111 17 6 -2.5108 -3.9180 -1.2362 18 6 -3.9532 -3.7174 -0.7063 19 6 -3.7196 -3.1704 0.7239 20 6 -2.4951 -3.9575 1.2346 21 7 -0.0486 -2.5856 0.0016 22 1 -0.4850 0.8400 -0.0004 23 1 2.9097 -3.9557 -0.0120 24 1 0.0596 -6.5731 0.4046 25 1 3.1376 -5.9775 0.3169 26 1 2.3577 -7.5950 0.7369 27 1 1.2594 -7.6592 -1.5486 28 1 2.0393 -6.0416 -1.9689 29 1 -1.6794 -5.5210 -0.0282 30 1 -2.0971 -2.9715 -1.5840 31 1 -2.4970 -4.6583 -2.0361 32 1 -4.4877 -4.6667 -0.6744 33 1 -4.4936 -2.9916 -1.3140 34 1 -4.5880 -3.3652 1.3532 35 1 -3.5021 -2.1027 0.6953 36 1 -2.8214 -4.8160 1.8217 37 1 -1.8612 -3.3095 1.8399 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261175491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:26 Heat of formation + Delta-G solvation = 69.230480 kcal Electronic energy + Delta-G solvation = -18049.435004 eV Core-core repulsion = 15406.757194 eV Total energy + Delta-G solvation = -2642.677810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27148 -37.27520 -36.43471 -33.07501 -30.21598 -29.75733 -28.12888 -27.11724 -24.70052 -22.23136 -21.92934 -20.57728 -20.11672 -19.09473 -17.93867 -17.28887 -15.48433 -15.16951 -14.76599 -14.64055 -14.24615 -13.47126 -13.25482 -12.72515 -12.44319 -12.27557 -12.14269 -11.35096 -11.10074 -10.96958 -10.84815 -10.70704 -10.59965 -10.54616 -10.43477 -10.36603 -10.22272 -10.07909 -9.91097 -9.74243 -9.00356 -7.92027 -7.74375 -6.80756 -6.13110 -3.90544 3.14261 3.29886 3.34371 3.41059 3.93739 4.20571 4.28877 4.65989 4.97219 5.08380 5.11411 5.14263 5.25628 5.33779 5.67451 5.74931 5.81478 5.88869 5.90684 5.99120 6.11282 6.13392 6.17648 6.19888 6.28386 6.39356 6.40424 6.53629 6.62747 6.80077 6.95510 7.03514 7.37812 7.59514 7.89170 8.03269 8.53282 8.86209 9.21176 9.41468 10.13512 10.80590 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.009209 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.854451 B = 3039.687549 C = 4462.626506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.077 3.923 3 Si 0.897 3.103 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.454 4.454 8 H 0.072 0.928 9 C 0.198 3.802 10 C -0.231 4.231 11 N -0.439 5.439 12 C 0.078 3.922 13 C -0.181 4.181 14 C -0.191 4.191 15 C 0.175 3.825 16 C 0.006 3.994 17 C -0.110 4.110 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.108 4.108 21 N -0.442 5.442 22 H 0.264 0.736 23 H 0.137 0.863 24 H 0.123 0.877 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 -10.136 -0.276 10.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.490 4.490 8 H 0.090 0.910 9 C 0.074 3.926 10 C -0.357 4.357 11 N -0.130 5.130 12 C -0.029 4.029 13 C -0.218 4.218 14 C -0.230 4.230 15 C -0.085 4.085 16 C -0.014 4.014 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.146 4.146 21 N -0.164 5.164 22 H 0.074 0.926 23 H 0.155 0.845 24 H 0.140 0.860 25 H 0.120 0.880 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.875 -9.434 -0.252 10.622 hybrid contribution 1.271 -0.002 -0.016 1.271 sum -3.604 -9.437 -0.268 10.105 Atomic orbital electron populations 1.70107 1.06458 1.26538 1.36624 1.25730 0.94733 0.99918 0.93755 0.86464 0.80664 0.82640 0.77941 1.19049 1.20502 1.20487 1.18456 0.93125 0.88445 1.48944 0.90950 1.18411 0.87586 0.90961 0.95602 1.22164 0.91058 0.89733 1.32706 1.44096 1.07077 1.02406 1.59382 1.21534 0.96630 0.81801 1.02933 1.23233 0.96516 1.02416 0.99682 1.23380 1.04841 1.02275 0.92467 1.23239 0.87576 0.88426 1.09257 1.19898 0.88396 0.97214 0.95942 1.22398 0.94172 1.02200 0.96033 1.22458 0.96777 0.99878 0.96772 1.22285 0.96707 1.01057 0.95488 1.22098 0.96615 0.99113 0.96805 1.71133 1.14941 1.10556 1.19771 0.92596 0.84544 0.85958 0.88034 0.88402 0.88542 0.88363 0.91879 0.89581 0.92807 0.92474 0.92006 0.92790 0.90744 0.93034 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.24 11.94 55.54 0.66 -21.58 16 2 C 0.08 2.14 5.49 -17.35 -0.10 2.04 16 3 Si 0.90 20.57 29.56 -169.99 -5.02 15.55 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.45 -13.21 9.38 -37.89 -0.36 -13.57 16 8 H 0.07 2.01 7.84 -52.49 -0.41 1.60 16 9 C 0.20 5.69 6.69 -84.58 -0.57 5.13 16 10 C -0.23 -5.83 10.91 -15.34 -0.17 -6.00 16 11 N -0.44 -9.75 3.08 -105.62 -0.33 -10.07 16 12 C 0.08 1.30 6.42 -67.92 -0.44 0.87 16 13 C -0.18 -2.58 9.98 -26.73 -0.27 -2.85 16 14 C -0.19 -2.74 10.39 -26.73 -0.28 -3.02 16 15 C 0.17 4.09 6.12 -154.86 -0.95 3.15 16 16 C 0.01 0.11 3.29 -90.66 -0.30 -0.19 16 17 C -0.11 -1.93 6.36 -25.03 -0.16 -2.09 16 18 C -0.12 -1.79 6.91 -24.69 -0.17 -1.96 16 19 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 20 C -0.11 -1.89 6.45 -25.61 -0.17 -2.06 16 21 N -0.44 -12.28 9.21 -8.18 -0.08 -12.35 16 22 H 0.26 7.02 8.30 -40.82 -0.34 6.68 16 23 H 0.14 3.20 7.10 -52.49 -0.37 2.83 16 24 H 0.12 1.78 7.21 -51.93 -0.37 1.40 16 25 H 0.10 1.59 6.87 -51.93 -0.36 1.24 16 26 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.06 1.02 6.79 -51.93 -0.35 0.67 16 30 H 0.09 1.84 7.65 -51.93 -0.40 1.44 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.58 7.63 -51.93 -0.40 1.19 16 LS Contribution 302.98 15.07 4.57 4.57 Total: -1.00 -31.69 302.98 -9.87 -41.56 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.60 Total: 4.93 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -4.08 Total: -22.60 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.26 Total: -44.00 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.69 -9.87 -41.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.790 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds