Wall clock time and date at job start Mon Mar 30 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99809 * 3 2 1 6 6 H 1.48498 * 109.47206 * 59.99794 * 3 2 1 7 7 C 1.39723 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99658 * 179.97438 * 7 2 1 9 9 C 1.41224 * 120.00120 * 0.28313 * 7 2 1 10 10 C 1.39091 * 126.44219 * 179.72183 * 9 7 2 11 11 N 1.36101 * 106.36950 * 179.97438 * 10 9 7 12 12 C 1.46504 * 126.10694 * 180.02562 * 11 10 9 13 13 C 1.53005 * 117.49782 * 8.58931 * 12 11 10 14 14 C 1.52995 * 60.00201 * 252.51669 * 13 12 11 15 15 C 1.35959 * 107.78324 * 359.97438 * 11 10 9 16 16 C 1.50698 * 125.20411 * 180.02562 * 15 11 10 17 17 C 1.54264 * 110.03647 * 237.91463 * 16 15 11 18 18 C 1.54969 * 104.16004 * 217.13425 * 17 16 15 19 19 C 1.54892 * 102.77491 * 37.88877 * 18 17 16 20 20 C 1.53872 * 110.03362 * 120.69355 * 16 15 11 21 21 N 1.30154 * 109.59637 * 359.72706 * 15 11 10 22 22 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 23 23 H 1.08001 * 126.81133 * 359.97438 * 10 9 7 24 24 H 1.08994 * 115.55189 * 154.30413 * 12 11 10 25 25 H 1.09002 * 117.50039 * 0.02562 * 13 12 11 26 26 H 1.09002 * 117.49580 * 145.02466 * 13 12 11 27 27 H 1.08998 * 117.49927 * 252.51472 * 14 13 12 28 28 H 1.09001 * 117.49753 * 107.48952 * 14 13 12 29 29 H 1.08999 * 110.01488 * 359.30601 * 16 15 11 30 30 H 1.09000 * 110.48265 * 335.78366 * 17 16 15 31 31 H 1.08996 * 110.49042 * 98.42567 * 17 16 15 32 32 H 1.08990 * 110.71784 * 279.57129 * 18 17 16 33 33 H 1.09001 * 110.91622 * 156.29314 * 18 17 16 34 34 H 1.09004 * 110.48187 * 203.40148 * 19 18 17 35 35 H 1.08997 * 110.60119 * 80.81713 * 19 18 17 36 36 H 1.09003 * 110.03314 * 238.57239 * 20 16 15 37 37 H 1.08999 * 110.03181 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 3.7042 1.3463 -0.0006 5 1 1.8855 2.3963 -1.2126 6 1 1.8855 2.3964 1.2125 7 6 2.0087 -1.2101 0.0005 8 1 3.0887 -1.2100 0.0001 9 6 1.3026 -2.4331 -0.0050 10 6 1.8585 -3.7081 -0.0106 11 7 0.8148 -4.5816 -0.0140 12 6 0.9124 -6.0433 -0.0197 13 6 2.2985 -6.6596 0.1805 14 6 1.6360 -6.6983 -1.1980 15 6 -0.3345 -3.8553 -0.0099 16 6 -1.7268 -4.4321 -0.0111 17 6 -2.5108 -3.9180 -1.2362 18 6 -3.9532 -3.7174 -0.7063 19 6 -3.7196 -3.1704 0.7239 20 6 -2.4951 -3.9575 1.2346 21 7 -0.0486 -2.5856 0.0016 22 1 -0.4850 0.8400 -0.0004 23 1 2.9097 -3.9557 -0.0120 24 1 0.0596 -6.5731 0.4046 25 1 3.1376 -5.9775 0.3169 26 1 2.3577 -7.5950 0.7369 27 1 1.2594 -7.6592 -1.5486 28 1 2.0393 -6.0416 -1.9689 29 1 -1.6794 -5.5210 -0.0282 30 1 -2.0971 -2.9715 -1.5840 31 1 -2.4970 -4.6583 -2.0361 32 1 -4.4877 -4.6667 -0.6744 33 1 -4.4936 -2.9916 -1.3140 34 1 -4.5880 -3.3652 1.3532 35 1 -3.5021 -2.1027 0.6953 36 1 -2.8214 -4.8160 1.8217 37 1 -1.8612 -3.3095 1.8399 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261175491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:25 Heat of formation + Delta-G solvation = 51.433186 kcal Electronic energy + Delta-G solvation = -18050.206752 eV Core-core repulsion = 15406.757194 eV Total energy + Delta-G solvation = -2643.449558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.05954 -38.64030 -37.84644 -35.09822 -32.04149 -31.38894 -29.48737 -28.96249 -26.56692 -23.48255 -23.38740 -22.25830 -21.41451 -20.86678 -19.58085 -19.06399 -17.31541 -16.63680 -16.38378 -16.05651 -15.73617 -15.11973 -14.86977 -14.20431 -14.12093 -14.02865 -13.70715 -12.94384 -12.71413 -12.49633 -12.38198 -12.29831 -12.11909 -11.91549 -11.88562 -11.82295 -11.74960 -11.62125 -11.38788 -11.29225 -10.93052 -9.86551 -9.57054 -8.80799 -8.18946 -6.04163 1.31252 1.39241 1.54319 1.66151 2.30834 2.40626 2.65138 2.93023 3.64535 3.70022 3.73508 3.83815 3.92704 3.95031 4.07001 4.34296 4.42788 4.57333 4.65254 4.67934 4.75011 4.78957 4.88994 4.91051 4.94162 5.06682 5.15272 5.16695 5.27138 5.33899 5.40725 5.50077 5.62166 5.65385 5.94897 6.07012 6.44622 6.98135 7.16467 7.36792 8.20048 8.76253 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.009209 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.854451 B = 3039.687549 C = 4462.626506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.026 3.974 3 Si 0.977 3.023 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.495 4.495 8 H 0.069 0.931 9 C 0.145 3.855 10 C -0.228 4.228 11 N -0.437 5.437 12 C 0.041 3.959 13 C -0.167 4.167 14 C -0.173 4.173 15 C 0.174 3.826 16 C 0.005 3.995 17 C -0.109 4.109 18 C -0.108 4.108 19 C -0.117 4.117 20 C -0.105 4.105 21 N -0.489 5.489 22 H 0.266 0.734 23 H 0.146 0.854 24 H 0.154 0.846 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.167 -12.910 -0.278 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.188 4.188 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.530 4.530 8 H 0.087 0.913 9 C 0.021 3.979 10 C -0.355 4.355 11 N -0.125 5.125 12 C -0.063 4.063 13 C -0.205 4.205 14 C -0.211 4.211 15 C -0.087 4.087 16 C -0.015 4.015 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.154 4.154 20 C -0.143 4.143 21 N -0.212 5.212 22 H 0.076 0.924 23 H 0.164 0.836 24 H 0.171 0.829 25 H 0.099 0.901 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.108 0.892 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.870 -12.267 -0.259 13.602 hybrid contribution 1.610 0.672 -0.020 1.745 sum -4.260 -11.596 -0.278 12.357 Atomic orbital electron populations 1.70257 1.08126 1.27528 1.37853 1.26623 0.95681 1.03552 0.92962 0.85248 0.79188 0.77363 0.78254 1.18386 1.19660 1.19633 1.18779 0.93225 0.90008 1.50995 0.91305 1.18909 0.88831 0.92373 0.97803 1.22272 0.92184 0.89704 1.31304 1.44305 1.05691 1.04845 1.57709 1.22145 0.99473 0.78581 1.06142 1.23340 0.94018 1.03070 1.00036 1.23423 1.03248 1.02958 0.91461 1.24090 0.89823 0.87844 1.06979 1.20190 0.85586 0.98961 0.96800 1.22341 0.95817 1.00206 0.96425 1.22437 0.95022 1.01834 0.95252 1.22265 0.97266 0.98615 0.97297 1.22072 0.96263 0.99775 0.96200 1.71017 1.14743 1.13618 1.21813 0.92413 0.83624 0.82886 0.90125 0.84485 0.84454 0.90857 0.88267 0.94698 0.90508 0.88590 0.91515 0.89461 0.94603 0.89229 0.95284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.60 11.94 21.79 0.26 -49.34 16 2 C 0.03 1.51 5.49 85.17 0.47 1.97 16 3 Si 0.98 44.20 29.56 68.60 2.03 46.23 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.49 -30.55 9.38 23.36 0.22 -30.33 16 8 H 0.07 4.07 7.84 -2.91 -0.02 4.05 16 9 C 0.15 8.86 6.69 39.44 0.26 9.12 16 10 C -0.23 -11.93 10.91 84.24 0.92 -11.01 16 11 N -0.44 -19.47 3.08 -488.08 -1.50 -20.97 16 12 C 0.04 1.26 6.42 44.99 0.29 1.55 16 13 C -0.17 -4.27 9.98 30.59 0.31 -3.97 16 14 C -0.17 -4.40 10.39 30.59 0.32 -4.08 16 15 C 0.17 8.33 6.12 137.93 0.84 9.17 16 16 C 0.00 0.17 3.29 -10.82 -0.04 0.14 16 17 C -0.11 -3.75 6.36 31.70 0.20 -3.55 16 18 C -0.11 -2.91 6.91 31.91 0.22 -2.69 16 19 C -0.12 -3.60 6.83 31.67 0.22 -3.39 16 20 C -0.10 -3.56 6.45 31.32 0.20 -3.36 16 21 N -0.49 -28.81 9.21 -179.79 -1.66 -30.46 16 22 H 0.27 15.00 8.30 -92.71 -0.77 14.23 16 23 H 0.15 7.11 7.10 -2.91 -0.02 7.09 16 24 H 0.15 3.75 7.21 -2.39 -0.02 3.73 16 25 H 0.08 2.43 6.87 -2.39 -0.02 2.41 16 26 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.10 2.81 6.79 -2.39 -0.02 2.80 16 30 H 0.03 1.54 7.65 -2.39 -0.02 1.53 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.03 1.24 7.63 -2.39 -0.02 1.22 16 Total: -1.00 -76.61 302.98 4.61 -72.01 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 1.05 Total: 22.95 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 4.43 Total: -40.41 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -2.90 Total: -100.78 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -76.61 4.61 -72.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.440 kcal (2) G-P(sol) polarization free energy of solvation -76.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds