Wall clock time and date at job start Mon Mar 30 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99724 * 2 1 4 4 H 1.48502 * 109.47367 * 269.99897 * 3 2 1 5 5 H 1.48504 * 109.47287 * 30.00226 * 3 2 1 6 6 H 1.48504 * 109.46909 * 149.99861 * 3 2 1 7 7 C 1.37877 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99692 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99859 * 180.02562 * 7 2 1 10 10 C 1.50697 * 109.46654 * 180.02562 * 9 7 2 11 11 C 1.34668 * 125.98944 * 125.00275 * 10 9 7 12 12 N 1.36890 * 106.81623 * 180.02562 * 11 10 9 13 13 C 1.46497 * 126.39409 * 180.02562 * 12 11 10 14 14 C 1.53000 * 117.50145 * 8.59836 * 13 12 11 15 15 C 1.53002 * 117.50058 * 299.97344 * 13 12 11 16 16 C 1.35042 * 107.20377 * 359.97438 * 12 11 10 17 17 C 1.50699 * 125.64638 * 179.97438 * 16 12 11 18 18 C 1.53784 * 113.61308 * 239.99994 * 17 16 12 19 19 C 1.53787 * 87.07923 * 220.01868 * 18 17 16 20 20 C 1.53779 * 113.61429 * 142.50420 * 17 16 12 21 21 N 1.30491 * 108.70122 * 0.22671 * 16 12 11 22 22 H 0.97001 * 120.00101 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47298 * 59.99947 * 9 7 2 24 24 H 1.09005 * 109.46843 * 299.99950 * 9 7 2 25 25 H 1.07992 * 126.59251 * 359.97438 * 11 10 9 26 26 H 1.09004 * 115.55025 * 154.30664 * 13 12 11 27 27 H 1.09000 * 117.49818 * 359.97438 * 14 13 12 28 28 H 1.09003 * 117.50007 * 145.02352 * 14 13 12 29 29 H 1.08998 * 117.49574 * 214.98091 * 15 13 12 30 30 H 1.08993 * 117.49695 * 0.02562 * 15 13 12 31 31 H 1.09002 * 112.90791 * 11.25092 * 17 16 12 32 32 H 1.09004 * 113.61451 * 105.47354 * 18 17 16 33 33 H 1.08994 * 113.61477 * 334.56656 * 18 17 16 34 34 H 1.08997 * 113.61028 * 139.98291 * 19 18 17 35 35 H 1.09000 * 113.61529 * 270.88430 * 19 18 17 36 36 H 1.09006 * 113.61307 * 25.43343 * 20 17 16 37 37 H 1.08999 * 113.69146 * 254.53828 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0139 -2.6147 -0.0013 11 6 4.8673 -3.1515 -0.8942 12 7 5.0546 -4.4571 -0.5276 13 6 5.9058 -5.4371 -1.2067 14 6 6.8196 -4.9263 -2.3225 15 6 5.5842 -5.7605 -2.6672 16 6 4.3089 -4.6725 0.5775 17 6 4.2083 -5.9750 1.3289 18 6 2.7796 -6.5403 1.3930 19 6 3.0856 -6.9357 2.8473 20 6 4.1237 -5.8011 2.8544 21 7 3.6859 -3.5677 0.8838 22 1 -0.4850 0.8400 0.0004 23 1 3.8746 -0.6807 0.8905 24 1 3.8753 -0.6795 -0.8895 25 1 5.3169 -2.6489 -1.7377 26 1 6.2790 -6.2486 -0.5820 27 1 6.7871 -3.8611 -2.5516 28 1 7.7944 -5.4017 -2.4319 29 1 5.7462 -6.7846 -3.0033 30 1 4.7395 -5.2438 -3.1228 31 1 4.9532 -6.7055 1.0133 32 1 2.6174 -7.3930 0.7336 33 1 2.0045 -5.7796 1.3012 34 1 2.2521 -6.7692 3.5296 35 1 3.5236 -7.9288 2.9469 36 1 3.7159 -4.8382 3.1622 37 1 5.0460 -6.0565 3.3762 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261187426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:24 Heat of formation + Delta-G solvation = 103.683861 kcal Electronic energy + Delta-G solvation = -17600.394755 eV Core-core repulsion = 14959.210956 eV Total energy + Delta-G solvation = -2641.183799 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.63134 -38.23692 -37.20177 -33.18361 -31.51258 -30.20438 -28.04148 -25.40385 -25.16729 -23.29117 -22.69072 -21.76736 -20.03046 -19.42182 -18.61318 -16.88700 -16.54930 -15.44352 -15.29173 -14.68927 -14.50151 -14.07852 -13.39298 -13.23936 -12.67468 -12.45062 -12.16816 -12.07204 -11.98548 -11.76436 -11.57390 -11.02001 -10.91495 -10.61929 -10.48509 -10.33638 -10.26801 -10.22306 -9.87520 -9.18414 -8.99404 -8.67530 -8.41213 -7.40966 -5.89574 -3.85008 2.49458 3.06121 3.38370 3.45897 3.49956 3.62585 3.92036 4.41415 4.55940 4.58291 4.64070 4.71989 4.80990 4.89867 5.08657 5.13545 5.26735 5.36562 5.43812 5.56927 5.68730 5.69375 5.81490 5.86389 5.99440 6.07159 6.20020 6.25634 6.29334 6.45337 6.71416 6.86928 7.13812 7.34525 7.55874 7.82621 7.91206 8.71425 8.96774 9.21212 9.71460 11.24343 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.006940 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.095106 B = 4033.575855 C = 5056.918788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.063 3.937 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.075 0.925 9 C 0.058 3.942 10 C 0.066 3.934 11 C -0.092 4.092 12 N -0.437 5.437 13 C 0.063 3.937 14 C -0.176 4.176 15 C -0.181 4.181 16 C 0.205 3.795 17 C -0.028 4.028 18 C -0.123 4.123 19 C -0.143 4.143 20 C -0.121 4.121 21 N -0.463 5.463 22 H 0.261 0.739 23 H 0.030 0.970 24 H 0.023 0.977 25 H 0.163 0.837 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.662 -14.676 -1.202 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.533 4.533 8 H 0.093 0.907 9 C 0.020 3.980 10 C -0.063 4.063 11 C -0.221 4.221 12 N -0.121 5.121 13 C -0.043 4.043 14 C -0.213 4.213 15 C -0.219 4.219 16 C -0.056 4.056 17 C -0.048 4.048 18 C -0.161 4.161 19 C -0.180 4.180 20 C -0.159 4.159 21 N -0.182 5.182 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.041 0.959 25 H 0.180 0.820 26 H 0.152 0.848 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.055 -14.503 -0.612 19.523 hybrid contribution 0.973 0.839 -0.968 1.608 sum 14.028 -13.664 -1.579 19.647 Atomic orbital electron populations 1.69914 1.06182 1.26537 1.51966 1.24994 0.94743 0.98787 0.95120 0.86845 0.80496 0.84022 0.78346 1.20406 1.21395 1.18990 1.20970 0.88509 0.94568 1.49270 0.90680 1.18100 0.97426 0.85816 0.96665 1.21098 0.95674 0.97331 0.92196 1.22243 1.09468 0.84630 1.05759 1.44613 1.35595 1.09064 1.22845 1.21798 0.97931 0.95031 0.89510 1.23341 0.95445 1.01568 1.00993 1.23455 0.99937 1.01635 0.96921 1.23026 0.95943 0.97326 0.89262 1.20862 0.98867 0.89938 0.95130 1.22947 0.96193 1.00611 0.96398 1.22808 0.99636 0.98149 0.97424 1.22919 0.99013 1.00452 0.93526 1.70126 1.22284 0.98193 1.27555 0.92924 0.95172 0.95904 0.82003 0.84753 0.87767 0.87509 0.87624 0.87848 0.88948 0.91812 0.88625 0.91034 0.90609 0.88168 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.06 13.96 55.43 0.77 -28.28 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.29 27.47 -169.99 -4.67 17.63 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.49 -15.04 9.63 -34.44 -0.33 -15.37 16 8 H 0.08 2.53 7.98 -52.48 -0.42 2.11 16 9 C 0.06 1.51 4.61 -29.04 -0.13 1.37 16 10 C 0.07 1.55 6.30 -82.85 -0.52 1.03 16 11 C -0.09 -1.79 10.75 -16.56 -0.18 -1.96 16 12 N -0.44 -7.33 3.08 -106.83 -0.33 -7.66 16 13 C 0.06 0.74 6.54 -67.93 -0.44 0.29 16 14 C -0.18 -1.69 9.99 -26.73 -0.27 -1.96 16 15 C -0.18 -1.84 10.40 -26.73 -0.28 -2.12 16 16 C 0.21 3.80 6.97 -155.42 -1.08 2.71 16 17 C -0.03 -0.39 4.04 -90.96 -0.37 -0.76 16 18 C -0.12 -1.70 7.63 -25.91 -0.20 -1.89 16 19 C -0.14 -1.65 8.08 -25.92 -0.21 -1.86 16 20 C -0.12 -1.62 7.62 -25.92 -0.20 -1.82 16 21 N -0.46 -10.68 10.79 -7.07 -0.08 -10.76 16 22 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 23 H 0.03 0.80 7.20 -51.93 -0.37 0.42 16 24 H 0.02 0.56 7.53 -51.93 -0.39 0.17 16 25 H 0.16 2.70 7.12 -52.49 -0.37 2.33 16 26 H 0.13 1.26 7.26 -51.93 -0.38 0.88 16 27 H 0.10 1.10 6.89 -51.93 -0.36 0.74 16 28 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.09 1.04 7.08 -51.93 -0.37 0.67 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.63 8.09 -51.93 -0.42 1.21 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.64 7.75 -51.93 -0.40 1.23 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -34.71 306.31 -9.60 -44.31 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.61 Total: 0.64 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -4.31 Total: -20.50 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.37 Total: -46.70 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.71 -9.60 -44.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261187426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.997 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds