Wall clock time and date at job start Mon Mar 30 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99924 * 2 1 4 4 H 1.48502 * 109.46990 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47327 * 119.99750 * 3 2 1 6 6 H 1.48496 * 109.47071 * 240.00160 * 3 2 1 7 7 C 1.37875 * 120.00315 * 180.27645 * 2 1 3 8 8 H 1.07992 * 120.00410 * 175.41716 * 7 2 1 9 9 C 1.50706 * 119.99705 * 355.42143 * 7 2 1 10 10 H 1.08997 * 109.47141 * 54.94563 * 9 7 2 11 11 N 1.46901 * 109.46808 * 294.94968 * 9 7 2 12 12 C 1.50696 * 109.47009 * 174.95062 * 9 7 2 13 13 C 1.38020 * 119.64937 * 99.72753 * 12 9 7 14 14 C 1.38089 * 119.84912 * 179.64923 * 13 12 9 15 15 C 1.38655 * 119.69418 * 0.60573 * 14 13 12 16 16 N 1.39668 * 119.81216 * 179.79653 * 15 14 13 17 17 C 1.39535 * 120.38173 * 359.81818 * 15 14 13 18 18 C 1.37575 * 119.63923 * 359.76840 * 17 15 14 19 19 C 1.50642 * 122.54942 * 180.45170 * 18 17 15 20 20 C 1.52736 * 110.59515 * 342.27182 * 19 18 17 21 21 C 1.53324 * 108.38223 * 51.10420 * 20 19 18 22 22 C 1.50623 * 117.76425 * 179.59496 * 17 15 14 23 23 H 0.96993 * 119.99536 * 176.20687 * 1 2 3 24 24 H 1.00901 * 110.99960 * 306.20227 * 11 9 7 25 25 H 1.00892 * 111.00504 * 70.16000 * 11 9 7 26 26 H 1.07996 * 120.07038 * 359.88530 * 13 12 9 27 27 H 1.08002 * 120.15676 * 180.38455 * 14 13 12 28 28 H 0.96993 * 120.00248 * 180.02562 * 16 15 14 29 29 H 0.97003 * 119.99523 * 0.02562 * 16 15 14 30 30 H 1.09000 * 109.25310 * 102.55538 * 19 18 17 31 31 H 1.09000 * 109.25371 * 222.02311 * 19 18 17 32 32 H 1.09004 * 109.67835 * 170.82872 * 20 19 18 33 33 H 1.08999 * 109.67809 * 291.37926 * 20 19 18 34 34 H 1.09001 * 109.68575 * 49.86064 * 21 20 19 35 35 H 1.08995 * 109.68324 * 170.42468 * 21 20 19 36 36 H 1.09003 * 109.25054 * 42.19060 * 22 17 15 37 37 H 1.09005 * 109.22816 * 282.74803 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0058 8 1 3.0820 -1.1951 -0.0805 9 6 1.2547 -2.4975 0.0921 10 1 0.5054 -2.5459 -0.6980 11 7 0.5927 -2.5845 1.4007 12 6 2.2198 -3.6449 -0.0598 13 6 2.6756 -4.3068 1.0622 14 6 3.5544 -5.3634 0.9273 15 6 3.9826 -5.7437 -0.3354 16 7 4.8748 -6.8093 -0.4744 17 6 3.5278 -5.0677 -1.4682 18 6 2.6457 -4.0214 -1.3276 19 6 2.1053 -3.2530 -2.5053 20 6 2.9707 -3.4866 -3.7419 21 6 3.1450 -4.9980 -3.9316 22 6 4.0381 -5.5241 -2.8098 23 1 -0.4849 -0.8382 -0.0556 24 1 1.2529 -2.4408 2.1501 25 1 -0.1728 -1.9303 1.4628 26 1 2.3427 -4.0016 2.0432 27 1 3.9094 -5.8889 1.8016 28 1 5.1764 -7.0774 -1.3564 29 1 5.1927 -7.2812 0.3112 30 1 1.0868 -3.5817 -2.7121 31 1 2.0984 -2.1892 -2.2678 32 1 2.4816 -3.0606 -4.6180 33 1 3.9453 -3.0193 -3.6015 34 1 2.1725 -5.4883 -3.8872 35 1 3.6125 -5.1954 -4.8962 36 1 4.0476 -6.6137 -2.8390 37 1 5.0526 -5.1519 -2.9535 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309163928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:20 Heat of formation + Delta-G solvation = -0.743368 kcal Electronic energy + Delta-G solvation = -18258.378509 eV Core-core repulsion = 15612.666406 eV Total energy + Delta-G solvation = -2645.712103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.69971 -35.91441 -35.74617 -33.39017 -30.85280 -30.26968 -29.63262 -27.20198 -25.24058 -23.23077 -22.43286 -22.12130 -19.55437 -18.81001 -17.07573 -16.76340 -15.98482 -15.05866 -14.70758 -14.34898 -13.85783 -13.59712 -13.37305 -13.02669 -12.94354 -12.34260 -12.21426 -12.03491 -11.79188 -11.66832 -11.32287 -10.94788 -10.82195 -10.52370 -10.35436 -10.16562 -9.79858 -9.67902 -9.44307 -9.29182 -8.49529 -7.83245 -7.30747 -6.74141 -6.31598 -4.18434 2.15021 2.40996 3.39714 3.40429 3.59526 4.27237 4.43831 4.62397 5.09756 5.14300 5.22644 5.26909 5.61761 5.67617 5.77761 5.91239 5.92335 5.97811 6.07315 6.20132 6.21525 6.37310 6.42670 6.49626 6.61617 6.71866 6.77935 6.92709 6.95978 7.27941 7.34936 7.58458 7.75983 7.99423 8.06561 8.12089 8.29847 8.64041 8.72958 8.84252 9.52244 10.91772 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.008017 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.350793 B = 3491.887556 C = 4086.436760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 1.064 2.936 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.613 4.613 8 H 0.049 0.951 9 C 0.231 3.769 10 H 0.040 0.960 11 N -0.855 5.855 12 C -0.078 4.078 13 C -0.069 4.069 14 C -0.207 4.207 15 C 0.187 3.813 16 N -0.889 5.889 17 C -0.159 4.159 18 C -0.028 4.028 19 C -0.086 4.086 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.064 4.064 23 H 0.270 0.730 24 H 0.322 0.678 25 H 0.334 0.666 26 H 0.119 0.881 27 H 0.106 0.894 28 H 0.390 0.610 29 H 0.390 0.610 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.437 -10.190 -4.057 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.892 3.108 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.653 4.653 8 H 0.067 0.933 9 C 0.122 3.878 10 H 0.057 0.943 11 N -0.383 5.383 12 C -0.081 4.081 13 C -0.088 4.088 14 C -0.229 4.229 15 C 0.085 3.915 16 N -0.430 5.430 17 C -0.164 4.164 18 C -0.029 4.029 19 C -0.123 4.123 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.101 4.101 23 H 0.082 0.918 24 H 0.132 0.868 25 H 0.146 0.854 26 H 0.137 0.863 27 H 0.125 0.875 28 H 0.218 0.782 29 H 0.217 0.783 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.005 -9.255 -4.224 12.352 hybrid contribution 0.889 -0.975 0.166 1.330 sum 7.894 -10.230 -4.058 13.544 Atomic orbital electron populations 1.70856 1.06751 1.30818 1.46349 1.25813 0.96446 1.02477 0.93213 0.83614 0.74986 0.75557 0.76647 1.20808 1.21517 1.21401 1.22554 0.95079 0.92005 1.55680 0.93278 1.18000 0.91068 0.90081 0.88698 0.94270 1.59566 1.14671 1.58447 1.05625 1.19998 0.99247 0.97334 0.91480 1.20612 0.95171 0.94079 0.98896 1.20373 1.05355 1.02640 0.94554 1.17581 0.91541 0.88971 0.93392 1.42379 1.53152 1.37382 1.10108 1.18862 1.04284 1.00264 0.92959 1.19152 0.95321 0.93755 0.94650 1.20558 0.97775 1.02379 0.91544 1.21533 1.00471 0.95375 0.98004 1.21512 0.99830 0.96818 0.97198 1.20153 0.98693 0.99020 0.92222 0.91802 0.86759 0.85396 0.86309 0.87550 0.78173 0.78319 0.91719 0.88058 0.92148 0.92025 0.91972 0.92408 0.92447 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.92 13.14 55.43 0.73 -25.19 16 2 C 0.03 0.69 5.39 -17.82 -0.10 0.60 16 3 Si 1.06 24.61 29.91 -169.99 -5.08 19.53 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.61 -16.41 7.21 -34.44 -0.25 -16.66 16 8 H 0.05 1.37 7.75 -52.49 -0.41 0.96 16 9 C 0.23 5.69 1.88 -70.01 -0.13 5.56 16 10 H 0.04 1.05 6.70 -51.93 -0.35 0.70 16 11 N -0.85 -19.98 8.49 -6.65 -0.06 -20.03 16 12 C -0.08 -1.76 5.04 -104.45 -0.53 -2.29 16 13 C -0.07 -1.42 9.25 -39.72 -0.37 -1.79 16 14 C -0.21 -3.73 9.88 -39.48 -0.39 -4.12 16 15 C 0.19 3.17 6.72 -83.65 -0.56 2.61 16 16 N -0.89 -11.18 8.95 32.48 0.29 -10.89 16 17 C -0.16 -2.86 5.75 -104.42 -0.60 -3.46 16 18 C -0.03 -0.57 5.73 -104.63 -0.60 -1.17 16 19 C -0.09 -1.67 4.54 -28.05 -0.13 -1.80 16 20 C -0.12 -1.83 5.98 -26.70 -0.16 -1.99 16 21 C -0.12 -1.59 5.98 -26.70 -0.16 -1.75 16 22 C -0.06 -0.91 4.87 -28.05 -0.14 -1.04 16 23 H 0.27 7.66 5.90 -40.82 -0.24 7.42 16 24 H 0.32 7.30 7.56 -39.29 -0.30 7.00 16 25 H 0.33 8.12 7.14 -39.30 -0.28 7.84 16 26 H 0.12 2.39 6.37 -52.49 -0.33 2.06 16 27 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.39 4.21 6.86 -40.82 -0.28 3.93 16 29 H 0.39 4.09 8.83 -40.82 -0.36 3.73 16 30 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 31 H 0.10 2.28 6.16 -51.93 -0.32 1.96 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.71 6.99 -51.93 -0.36 0.35 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 287.10 15.07 4.33 4.33 Total: -1.00 -28.92 287.10 -8.88 -37.80 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -4.98 Total: 21.77 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -4.11 Total: -27.30 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.96 Total: -56.12 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.92 -8.88 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309163928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.059 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds