Wall clock time and date at job start Mon Mar 30 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99924 * 2 1 4 4 H 1.48502 * 109.46990 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47327 * 119.99750 * 3 2 1 6 6 H 1.48496 * 109.47071 * 240.00160 * 3 2 1 7 7 C 1.37875 * 120.00315 * 180.27645 * 2 1 3 8 8 H 1.07992 * 120.00410 * 175.41716 * 7 2 1 9 9 C 1.50706 * 119.99705 * 355.42143 * 7 2 1 10 10 H 1.08997 * 109.47141 * 54.94563 * 9 7 2 11 11 N 1.46901 * 109.46808 * 294.94968 * 9 7 2 12 12 C 1.50696 * 109.47009 * 174.95062 * 9 7 2 13 13 C 1.38020 * 119.64937 * 99.72753 * 12 9 7 14 14 C 1.38089 * 119.84912 * 179.64923 * 13 12 9 15 15 C 1.38655 * 119.69418 * 0.60573 * 14 13 12 16 16 N 1.39668 * 119.81216 * 179.79653 * 15 14 13 17 17 C 1.39535 * 120.38173 * 359.81818 * 15 14 13 18 18 C 1.37575 * 119.63923 * 359.76840 * 17 15 14 19 19 C 1.50642 * 122.54942 * 180.45170 * 18 17 15 20 20 C 1.52736 * 110.59515 * 342.27182 * 19 18 17 21 21 C 1.53324 * 108.38223 * 51.10420 * 20 19 18 22 22 C 1.50623 * 117.76425 * 179.59496 * 17 15 14 23 23 H 0.96993 * 119.99536 * 176.20687 * 1 2 3 24 24 H 1.00901 * 110.99960 * 306.20227 * 11 9 7 25 25 H 1.00892 * 111.00504 * 70.16000 * 11 9 7 26 26 H 1.07996 * 120.07038 * 359.88530 * 13 12 9 27 27 H 1.08002 * 120.15676 * 180.38455 * 14 13 12 28 28 H 0.96993 * 120.00248 * 180.02562 * 16 15 14 29 29 H 0.97003 * 119.99523 * 0.02562 * 16 15 14 30 30 H 1.09000 * 109.25310 * 102.55538 * 19 18 17 31 31 H 1.09000 * 109.25371 * 222.02311 * 19 18 17 32 32 H 1.09004 * 109.67835 * 170.82872 * 20 19 18 33 33 H 1.08999 * 109.67809 * 291.37926 * 20 19 18 34 34 H 1.09001 * 109.68575 * 49.86064 * 21 20 19 35 35 H 1.08995 * 109.68324 * 170.42468 * 21 20 19 36 36 H 1.09003 * 109.25054 * 42.19060 * 22 17 15 37 37 H 1.09005 * 109.22816 * 282.74803 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0058 8 1 3.0820 -1.1951 -0.0805 9 6 1.2547 -2.4975 0.0921 10 1 0.5054 -2.5459 -0.6980 11 7 0.5927 -2.5845 1.4007 12 6 2.2198 -3.6449 -0.0598 13 6 2.6756 -4.3068 1.0622 14 6 3.5544 -5.3634 0.9273 15 6 3.9826 -5.7437 -0.3354 16 7 4.8748 -6.8093 -0.4744 17 6 3.5278 -5.0677 -1.4682 18 6 2.6457 -4.0214 -1.3276 19 6 2.1053 -3.2530 -2.5053 20 6 2.9707 -3.4866 -3.7419 21 6 3.1450 -4.9980 -3.9316 22 6 4.0381 -5.5241 -2.8098 23 1 -0.4849 -0.8382 -0.0556 24 1 1.2529 -2.4408 2.1501 25 1 -0.1728 -1.9303 1.4628 26 1 2.3427 -4.0016 2.0432 27 1 3.9094 -5.8889 1.8016 28 1 5.1764 -7.0774 -1.3564 29 1 5.1927 -7.2812 0.3112 30 1 1.0868 -3.5817 -2.7121 31 1 2.0984 -2.1892 -2.2678 32 1 2.4816 -3.0606 -4.6180 33 1 3.9453 -3.0193 -3.6015 34 1 2.1725 -5.4883 -3.8872 35 1 3.6125 -5.1954 -4.8962 36 1 4.0476 -6.6137 -2.8390 37 1 5.0526 -5.1519 -2.9535 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309163928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:19 Heat of formation + Delta-G solvation = -19.714971 kcal Electronic energy + Delta-G solvation = -18259.201179 eV Core-core repulsion = 15612.666406 eV Total energy + Delta-G solvation = -2646.534774 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12961 -37.61466 -37.06609 -35.03717 -32.75498 -31.61488 -31.00646 -28.76653 -27.17575 -24.60495 -24.13907 -23.54089 -21.11415 -20.16868 -19.02245 -18.18637 -17.29193 -16.77597 -16.05847 -15.75999 -15.67990 -15.03746 -14.80791 -14.60676 -14.45401 -13.93735 -13.90470 -13.70703 -13.39149 -13.16634 -12.70480 -12.58311 -12.34530 -12.03315 -11.86417 -11.75708 -11.54815 -11.08755 -11.03387 -10.91433 -10.55854 -9.33949 -9.24927 -8.61997 -8.00045 -6.36844 0.66789 0.90328 1.49850 1.55030 1.75629 2.52306 3.07984 3.12834 3.16015 3.85030 3.89924 4.07005 4.15377 4.34474 4.37088 4.43357 4.62537 4.67284 4.68770 4.76514 4.97002 5.01817 5.06243 5.08877 5.16987 5.25742 5.31611 5.45615 5.50395 5.67016 5.79811 5.90551 6.12710 6.16428 6.18772 6.56109 6.67351 6.75633 6.86546 7.15275 7.40232 8.72787 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.008017 C = 0.006850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.350793 B = 3491.887556 C = 4086.436760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.019 4.019 3 Si 1.107 2.893 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.611 4.611 8 H 0.032 0.968 9 C 0.239 3.761 10 H 0.006 0.994 11 N -0.844 5.844 12 C -0.121 4.121 13 C -0.083 4.083 14 C -0.212 4.212 15 C 0.198 3.802 16 N -0.867 5.867 17 C -0.166 4.166 18 C -0.047 4.047 19 C -0.082 4.082 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.063 4.063 23 H 0.259 0.741 24 H 0.326 0.674 25 H 0.325 0.675 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.404 0.596 29 H 0.404 0.596 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 -12.098 -4.927 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.219 4.219 3 Si 0.930 3.070 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.651 4.651 8 H 0.051 0.949 9 C 0.129 3.871 10 H 0.024 0.976 11 N -0.371 5.371 12 C -0.123 4.123 13 C -0.102 4.102 14 C -0.234 4.234 15 C 0.093 3.907 16 N -0.410 5.410 17 C -0.170 4.170 18 C -0.048 4.048 19 C -0.119 4.119 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.100 4.100 23 H 0.070 0.930 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.152 0.848 28 H 0.234 0.766 29 H 0.234 0.766 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.500 -11.220 -5.094 15.560 hybrid contribution 0.167 -0.501 0.441 0.688 sum 9.666 -11.721 -4.653 15.889 Atomic orbital electron populations 1.70958 1.07462 1.30192 1.48283 1.27042 0.96554 1.05671 0.92586 0.83044 0.74237 0.72156 0.77569 1.20854 1.20121 1.20124 1.22687 0.94207 0.93366 1.54870 0.94937 1.17772 0.90613 0.90774 0.87909 0.97615 1.59545 1.14327 1.57838 1.05402 1.19942 1.00830 0.98147 0.93375 1.20661 0.96264 0.95205 0.98049 1.20609 1.04635 1.01911 0.96274 1.17674 0.91093 0.89255 0.92669 1.42291 1.51324 1.35588 1.11754 1.19259 1.03138 0.99191 0.95452 1.19340 0.96390 0.95050 0.93974 1.20431 0.98300 0.99624 0.93512 1.21516 0.99440 0.97646 0.96357 1.21504 1.00012 0.94494 0.98792 1.20260 0.99090 1.00655 0.89957 0.92968 0.86325 0.86312 0.86849 0.84779 0.76580 0.76634 0.92802 0.92266 0.90815 0.92288 0.92408 0.88984 0.89700 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.14 21.45 0.28 -54.74 16 2 C -0.02 -1.06 5.39 84.65 0.46 -0.61 16 3 Si 1.11 50.40 29.91 68.60 2.05 52.45 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.61 -34.20 7.21 25.60 0.18 -34.01 16 8 H 0.03 1.88 7.75 -2.91 -0.02 1.86 16 9 C 0.24 12.46 1.88 43.42 0.08 12.54 16 10 H 0.01 0.35 6.70 -2.39 -0.02 0.33 16 11 N -0.84 -41.42 8.49 -174.95 -1.49 -42.90 16 12 C -0.12 -5.61 5.04 -19.75 -0.10 -5.71 16 13 C -0.08 -3.45 9.25 22.18 0.21 -3.25 16 14 C -0.21 -7.24 9.88 22.33 0.22 -7.02 16 15 C 0.20 6.14 6.72 38.31 0.26 6.39 16 16 N -0.87 -17.87 8.95 -51.15 -0.46 -18.33 16 17 C -0.17 -5.62 5.75 -19.73 -0.11 -5.73 16 18 C -0.05 -1.94 5.73 -19.87 -0.11 -2.05 16 19 C -0.08 -3.30 4.54 29.74 0.14 -3.17 16 20 C -0.11 -3.41 5.98 30.61 0.18 -3.23 16 21 C -0.11 -2.69 5.98 30.62 0.18 -2.50 16 22 C -0.06 -1.54 4.87 29.74 0.14 -1.39 16 23 H 0.26 15.53 5.90 -92.71 -0.55 14.98 16 24 H 0.33 15.39 7.56 -89.69 -0.68 14.71 16 25 H 0.33 16.71 7.14 -89.70 -0.64 16.07 16 26 H 0.11 4.68 6.37 -2.91 -0.02 4.66 16 27 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 28 H 0.40 6.57 6.86 -92.71 -0.64 5.94 16 29 H 0.40 6.54 8.83 -92.71 -0.82 5.72 16 30 H 0.05 2.21 8.12 -2.39 -0.02 2.19 16 31 H 0.06 2.85 6.16 -2.39 -0.01 2.84 16 32 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 34 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.65 6.99 -2.39 -0.02 1.63 16 37 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -65.28 287.10 0.69 -64.59 By element: Atomic # 1 Polarization: 50.09 SS G_CDS: -1.43 Total: 48.66 kcal Atomic # 6 Polarization: -51.46 SS G_CDS: 1.72 Total: -49.73 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -1.66 Total: -115.97 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Total: -65.28 0.69 -64.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309163928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.878 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds