Wall clock time and date at job start Mon Mar 30 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.47136 * 2 1 4 4 C 1.50700 * 109.46797 * 239.99778 * 2 1 3 5 5 C 1.38235 * 120.00103 * 299.72621 * 4 2 1 6 6 C 1.38239 * 119.99524 * 179.76789 * 5 4 2 7 7 C 1.38231 * 120.00068 * 0.48751 * 6 5 4 8 8 C 1.38235 * 120.00102 * 359.79095 * 7 6 5 9 9 C 1.38232 * 119.99874 * 359.95492 * 8 7 6 10 10 C 1.52999 * 109.46805 * 120.00134 * 2 1 3 11 11 H 1.08999 * 110.41887 * 177.68987 * 10 2 1 12 12 C 1.54480 * 110.37228 * 299.99634 * 10 2 1 13 13 C 1.54514 * 104.18308 * 142.74416 * 12 10 2 14 14 C 1.54798 * 103.90974 * 0.10211 * 13 12 10 15 15 H 1.09005 * 110.52671 * 94.83245 * 14 13 12 16 16 C 1.50699 * 110.30567 * 217.11592 * 14 13 12 17 17 H 1.07998 * 120.00350 * 356.80428 * 16 14 13 18 18 C 1.37880 * 119.99841 * 176.79903 * 16 14 13 19 19 N 1.31519 * 119.99923 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00084 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46877 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46858 * 120.00121 * 20 18 16 23 23 H 1.48494 * 109.47499 * 240.00118 * 20 18 16 24 24 O 1.44416 * 104.80351 * 335.91814 * 14 13 12 25 25 H 1.09000 * 109.46841 * 300.00322 * 1 2 3 26 26 H 1.08996 * 109.47024 * 60.00174 * 1 2 3 27 27 H 1.08999 * 109.46692 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00369 * 359.97438 * 5 4 2 29 29 H 1.07999 * 119.99898 * 180.25255 * 6 5 4 30 30 H 1.08002 * 119.99867 * 179.76568 * 7 6 5 31 31 H 1.08005 * 119.99602 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.99488 * 180.02562 * 9 8 7 33 33 H 1.09002 * 110.51311 * 261.45940 * 12 10 2 34 34 H 1.08994 * 110.50961 * 24.03151 * 12 10 2 35 35 H 1.09004 * 110.50878 * 118.71780 * 13 12 10 36 36 H 1.09004 * 110.51070 * 241.42497 * 13 12 10 37 37 H 0.96998 * 119.99859 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.7030 -2.0356 -1.4463 6 6 2.1598 -2.6858 -2.5775 7 6 2.9542 -2.0139 -3.4876 8 6 3.2882 -0.6904 -3.2688 9 6 2.8271 -0.0387 -2.1403 10 6 2.0400 -0.7213 1.2492 11 1 3.1290 -0.7661 1.2446 12 6 1.5366 -0.0093 2.5244 13 6 1.2409 -1.1620 3.5100 14 6 1.6046 -2.4371 2.7111 15 1 2.6264 -2.7470 2.9302 16 6 0.6398 -3.5490 3.0333 17 1 -0.1301 -3.3979 3.7755 18 6 0.7399 -4.7594 2.3805 19 7 1.6778 -4.9436 1.4770 20 14 -0.4555 -6.1380 2.7804 21 1 -1.4073 -5.6805 3.8244 22 1 -1.2071 -6.5122 1.5555 23 1 0.2973 -7.3170 3.2787 24 8 1.4824 -2.0514 1.3248 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.0862 -2.5618 -0.7330 29 1 1.8992 -3.7199 -2.7482 30 1 3.3142 -2.5230 -4.3694 31 1 3.9093 -0.1657 -3.9797 32 1 3.0878 0.9953 -1.9697 33 1 2.3088 0.6474 2.9253 34 1 0.6284 0.5551 2.3134 35 1 1.8669 -1.0752 4.3981 36 1 0.1860 -1.1689 3.7842 37 1 1.7480 -5.7950 1.0175 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309424094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:05 Heat of formation + Delta-G solvation = -33.471759 kcal Electronic energy + Delta-G solvation = -18268.126322 eV Core-core repulsion = 15588.702258 eV Total energy + Delta-G solvation = -2679.424064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.27490 -37.82050 -34.05481 -32.29511 -30.88109 -30.32990 -29.12416 -27.52837 -24.91696 -23.21170 -22.03982 -21.15021 -19.96532 -19.01645 -16.71191 -16.29907 -15.16441 -14.85011 -14.81450 -14.30704 -13.92131 -13.81232 -13.13998 -12.87034 -12.63405 -12.48148 -12.17782 -11.81256 -11.47536 -11.18349 -11.01532 -10.93755 -10.73078 -10.57153 -10.30872 -10.28201 -9.98151 -9.72201 -9.51612 -9.05211 -8.57640 -8.36997 -8.16952 -7.98163 -5.99587 -4.11662 1.86296 1.97073 3.29758 3.38111 3.41454 4.31706 4.42836 4.96328 5.18813 5.28232 5.45077 5.47301 5.51442 5.59443 5.75962 5.79063 5.86443 5.96661 6.01773 6.14853 6.24840 6.25073 6.38320 6.50516 6.55780 6.65061 6.70118 6.73283 6.83564 6.87595 6.93061 6.99065 7.20105 7.31428 7.54583 7.62138 7.90115 8.26752 8.56873 8.99688 9.58188 11.07398 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.008395 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.344801 B = 3334.523082 C = 4274.459868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.042 4.042 3 H 0.072 0.928 4 C -0.074 4.074 5 C -0.077 4.077 6 C -0.123 4.123 7 C -0.132 4.132 8 C -0.136 4.136 9 C -0.127 4.127 10 C 0.073 3.927 11 H 0.046 0.954 12 C -0.153 4.153 13 C -0.146 4.146 14 C 0.206 3.794 15 H 0.022 0.978 16 C -0.527 4.527 17 H 0.062 0.938 18 C 0.078 3.922 19 N -0.860 5.860 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 O -0.338 6.338 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.150 0.850 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 9.004 -5.721 10.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.061 4.061 3 H 0.090 0.910 4 C -0.074 4.074 5 C -0.094 4.094 6 C -0.141 4.141 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.145 4.145 10 C 0.014 3.986 11 H 0.064 0.936 12 C -0.191 4.191 13 C -0.184 4.184 14 C 0.150 3.850 15 H 0.040 0.960 16 C -0.565 4.565 17 H 0.081 0.919 18 C -0.128 4.128 19 N -0.497 5.497 20 Si 0.715 3.285 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.210 1.210 24 O -0.258 6.258 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.168 0.832 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.055 8.748 -6.015 10.669 hybrid contribution -0.324 -0.667 0.309 0.804 sum 0.731 8.081 -5.707 9.920 Atomic orbital electron populations 1.21791 0.94079 1.03426 1.00254 1.20183 0.96608 0.97345 0.91915 0.90970 1.19853 0.97389 0.94704 0.95422 1.21568 0.98062 0.93740 0.96060 1.21206 0.98293 0.99751 0.94832 1.21044 0.99561 0.94905 0.99493 1.20922 1.01388 0.95142 0.97950 1.20977 0.99123 0.99365 0.95006 1.22712 0.96339 0.87340 0.92251 0.93564 1.23046 1.00582 0.98530 0.96962 1.23073 1.01105 0.96354 0.97839 1.20543 0.96254 0.90202 0.77986 0.96010 1.21056 1.16735 0.95865 1.22831 0.91943 1.25054 0.95029 0.98282 0.94418 1.70056 1.31559 1.24003 1.24042 0.86623 0.81361 0.82179 0.78312 1.19717 1.20906 1.21002 1.89425 1.80848 1.25750 1.29736 0.92541 0.93791 0.90830 0.83206 0.86549 0.87073 0.87063 0.87008 0.92698 0.91453 0.93056 0.91884 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.59 37.16 0.32 -1.97 16 2 C -0.04 -0.72 2.55 -91.77 -0.23 -0.95 16 3 H 0.07 1.06 7.88 -51.93 -0.41 0.65 16 4 C -0.07 -1.32 4.78 -104.63 -0.50 -1.82 16 5 C -0.08 -1.52 8.44 -39.58 -0.33 -1.86 16 6 C -0.12 -2.19 10.05 -39.58 -0.40 -2.59 16 7 C -0.13 -2.05 10.05 -39.59 -0.40 -2.44 16 8 C -0.14 -2.01 10.05 -39.58 -0.40 -2.41 16 9 C -0.13 -1.98 9.67 -39.59 -0.38 -2.36 16 10 C 0.07 1.44 2.96 -25.95 -0.08 1.37 16 11 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 12 C -0.15 -2.74 6.45 -25.16 -0.16 -2.90 16 13 C -0.15 -3.02 6.63 -24.99 -0.17 -3.19 16 14 C 0.21 5.22 3.12 -26.94 -0.08 5.14 16 15 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 16 C -0.53 -14.54 8.78 -34.44 -0.30 -14.84 16 17 H 0.06 1.69 7.59 -52.49 -0.40 1.29 16 18 C 0.08 2.16 5.42 -17.82 -0.10 2.06 16 19 N -0.86 -24.83 12.94 55.43 0.72 -24.12 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 O -0.34 -8.26 7.19 -35.23 -0.25 -8.51 16 25 H 0.06 0.87 6.11 -51.93 -0.32 0.55 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.41 6.87 -51.93 -0.36 1.05 16 28 H 0.15 3.46 5.79 -52.49 -0.30 3.16 16 29 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.11 1.47 7.95 -52.49 -0.42 1.06 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.11 5.79 -51.93 -0.30 0.81 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.31 7.74 -51.93 -0.40 0.91 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 297.43 15.07 4.48 4.48 Total: -1.00 -29.05 297.43 -8.71 -37.76 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.42 Total: 3.01 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: -3.21 Total: -28.76 kcal Atomic # 7 Polarization: -24.83 SS G_CDS: 0.72 Total: -24.12 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.25 Total: -8.51 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.05 -8.71 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309424094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.284 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds