Wall clock time and date at job start Mon Mar 30 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.47136 * 2 1 4 4 C 1.50700 * 109.46797 * 239.99778 * 2 1 3 5 5 C 1.38235 * 120.00103 * 299.72621 * 4 2 1 6 6 C 1.38239 * 119.99524 * 179.76789 * 5 4 2 7 7 C 1.38231 * 120.00068 * 0.48751 * 6 5 4 8 8 C 1.38235 * 120.00102 * 359.79095 * 7 6 5 9 9 C 1.38232 * 119.99874 * 359.95492 * 8 7 6 10 10 C 1.52999 * 109.46805 * 120.00134 * 2 1 3 11 11 H 1.08999 * 110.41887 * 177.68987 * 10 2 1 12 12 C 1.54480 * 110.37228 * 299.99634 * 10 2 1 13 13 C 1.54514 * 104.18308 * 142.74416 * 12 10 2 14 14 C 1.54798 * 103.90974 * 0.10211 * 13 12 10 15 15 H 1.09005 * 110.52671 * 94.83245 * 14 13 12 16 16 C 1.50699 * 110.30567 * 217.11592 * 14 13 12 17 17 H 1.07998 * 120.00350 * 356.80428 * 16 14 13 18 18 C 1.37880 * 119.99841 * 176.79903 * 16 14 13 19 19 N 1.31519 * 119.99923 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00084 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46877 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46858 * 120.00121 * 20 18 16 23 23 H 1.48494 * 109.47499 * 240.00118 * 20 18 16 24 24 O 1.44416 * 104.80351 * 335.91814 * 14 13 12 25 25 H 1.09000 * 109.46841 * 300.00322 * 1 2 3 26 26 H 1.08996 * 109.47024 * 60.00174 * 1 2 3 27 27 H 1.08999 * 109.46692 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00369 * 359.97438 * 5 4 2 29 29 H 1.07999 * 119.99898 * 180.25255 * 6 5 4 30 30 H 1.08002 * 119.99867 * 179.76568 * 7 6 5 31 31 H 1.08005 * 119.99602 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.99488 * 180.02562 * 9 8 7 33 33 H 1.09002 * 110.51311 * 261.45940 * 12 10 2 34 34 H 1.08994 * 110.50961 * 24.03151 * 12 10 2 35 35 H 1.09004 * 110.50878 * 118.71780 * 13 12 10 36 36 H 1.09004 * 110.51070 * 241.42497 * 13 12 10 37 37 H 0.96998 * 119.99859 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.7030 -2.0356 -1.4463 6 6 2.1598 -2.6858 -2.5775 7 6 2.9542 -2.0139 -3.4876 8 6 3.2882 -0.6904 -3.2688 9 6 2.8271 -0.0387 -2.1403 10 6 2.0400 -0.7213 1.2492 11 1 3.1290 -0.7661 1.2446 12 6 1.5366 -0.0093 2.5244 13 6 1.2409 -1.1620 3.5100 14 6 1.6046 -2.4371 2.7111 15 1 2.6264 -2.7470 2.9302 16 6 0.6398 -3.5490 3.0333 17 1 -0.1301 -3.3979 3.7755 18 6 0.7399 -4.7594 2.3805 19 7 1.6778 -4.9436 1.4770 20 14 -0.4555 -6.1380 2.7804 21 1 -1.4073 -5.6805 3.8244 22 1 -1.2071 -6.5122 1.5555 23 1 0.2973 -7.3170 3.2787 24 8 1.4824 -2.0514 1.3248 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.0862 -2.5618 -0.7330 29 1 1.8992 -3.7199 -2.7482 30 1 3.3142 -2.5230 -4.3694 31 1 3.9093 -0.1657 -3.9797 32 1 3.0878 0.9953 -1.9697 33 1 2.3088 0.6474 2.9253 34 1 0.6284 0.5551 2.3134 35 1 1.8669 -1.0752 4.3981 36 1 0.1860 -1.1689 3.7842 37 1 1.7480 -5.7950 1.0175 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309424094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:05 Heat of formation + Delta-G solvation = -48.588808 kcal Electronic energy + Delta-G solvation = -18268.781847 eV Core-core repulsion = 15588.702258 eV Total energy + Delta-G solvation = -2680.079588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.71866 -39.35769 -35.61275 -34.28039 -32.54963 -31.62878 -30.61367 -29.20914 -26.65812 -24.78844 -23.34887 -22.74581 -21.63135 -20.45858 -18.74060 -17.62838 -16.79433 -16.62612 -16.19385 -16.01827 -15.57533 -15.29813 -14.57944 -14.29956 -14.21079 -13.99366 -13.68423 -13.54478 -12.90113 -12.87668 -12.70005 -12.39677 -12.38689 -12.14525 -11.95651 -11.82715 -11.61275 -11.20235 -11.14126 -10.95944 -10.66100 -9.94102 -9.67498 -9.42684 -8.12583 -6.31811 0.57314 0.66272 1.38076 1.39640 1.51296 2.40392 2.98720 3.10724 3.61853 3.91289 3.96376 4.16196 4.21923 4.26024 4.28330 4.38101 4.50805 4.52879 4.68110 4.74761 4.83607 4.88331 4.91017 5.01085 5.08975 5.13926 5.20539 5.31248 5.37437 5.39651 5.54385 5.58807 5.67657 5.76331 5.82527 5.97297 6.21170 6.29682 6.59986 6.99042 7.42251 8.94625 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.008395 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.344801 B = 3334.523082 C = 4274.459868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.037 4.037 3 H 0.109 0.891 4 C -0.089 4.089 5 C -0.108 4.108 6 C -0.144 4.144 7 C -0.130 4.130 8 C -0.129 4.129 9 C -0.124 4.124 10 C 0.062 3.938 11 H 0.032 0.968 12 C -0.141 4.141 13 C -0.140 4.140 14 C 0.196 3.804 15 H -0.018 1.018 16 C -0.547 4.547 17 H 0.062 0.938 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.955 3.045 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.278 1.278 24 O -0.360 6.360 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 11.409 -6.578 13.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.055 4.055 3 H 0.127 0.873 4 C -0.089 4.089 5 C -0.126 4.126 6 C -0.163 4.163 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.142 4.142 10 C 0.004 3.996 11 H 0.050 0.950 12 C -0.178 4.178 13 C -0.178 4.178 14 C 0.140 3.860 15 H 0.000 1.000 16 C -0.585 4.585 17 H 0.080 0.920 18 C -0.176 4.176 19 N -0.532 5.532 20 Si 0.780 3.220 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.203 1.203 24 O -0.279 6.279 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.283 11.163 -6.862 13.166 hybrid contribution -0.328 -1.392 0.520 1.522 sum 0.956 9.771 -6.342 11.688 Atomic orbital electron populations 1.21717 0.93955 1.01350 1.01874 1.20231 0.96697 0.98494 0.90060 0.87263 1.20003 0.98295 0.93991 0.96567 1.21314 0.99588 0.95225 0.96465 1.21300 0.99655 0.99917 0.95378 1.21370 0.98280 0.95590 0.99552 1.21414 1.00480 0.94684 0.98075 1.21360 0.97637 1.00818 0.94351 1.22964 0.95650 0.85957 0.95056 0.94955 1.23002 1.02374 0.97647 0.94780 1.22954 1.01127 0.95207 0.98467 1.20417 0.93665 0.92179 0.79770 1.00011 1.21431 1.16971 0.97180 1.22908 0.91961 1.25871 0.96695 1.00822 0.94260 1.70196 1.33336 1.24506 1.25133 0.85575 0.79221 0.79086 0.78139 1.18694 1.20851 1.20321 1.89409 1.81170 1.28577 1.28769 0.91243 0.91714 0.94742 0.87828 0.87212 0.84169 0.83107 0.83603 0.89693 0.89441 0.91681 0.92110 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.59 71.98 0.62 -3.62 16 2 C -0.04 -1.19 2.55 -11.54 -0.03 -1.22 16 3 H 0.11 2.75 7.88 -2.39 -0.02 2.73 16 4 C -0.09 -3.11 4.78 -19.87 -0.09 -3.20 16 5 C -0.11 -4.50 8.44 22.27 0.19 -4.31 16 6 C -0.14 -5.33 10.05 22.27 0.22 -5.11 16 7 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 8 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 9 C -0.12 -3.47 9.67 22.27 0.22 -3.26 16 10 C 0.06 2.47 2.96 31.10 0.09 2.56 16 11 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 12 C -0.14 -4.75 6.45 31.61 0.20 -4.55 16 13 C -0.14 -5.77 6.63 31.72 0.21 -5.56 16 14 C 0.20 10.39 3.12 30.46 0.10 10.49 16 15 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 16 C -0.55 -31.39 8.78 25.60 0.22 -31.17 16 17 H 0.06 3.46 7.59 -2.91 -0.02 3.44 16 18 C 0.03 1.49 5.42 84.65 0.46 1.95 16 19 N -0.89 -54.43 12.94 21.45 0.28 -54.16 16 20 Si 0.95 44.86 29.54 68.60 2.03 46.88 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 O -0.36 -18.45 7.19 -148.98 -1.07 -19.52 16 25 H 0.07 2.00 6.11 -2.39 -0.01 1.99 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.03 1.36 6.87 -2.39 -0.02 1.34 16 28 H 0.10 5.27 5.79 -2.91 -0.02 5.25 16 29 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.15 3.08 7.95 -2.91 -0.02 3.05 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.09 2.61 5.79 -2.39 -0.01 2.60 16 35 H 0.06 2.45 8.14 -2.38 -0.02 2.44 16 36 H 0.06 2.51 7.74 -2.39 -0.02 2.49 16 37 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -67.36 297.43 5.12 -62.23 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.04 Total: 18.25 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 2.85 Total: -53.69 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.28 Total: -54.16 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.07 Total: -19.52 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -67.36 5.12 -62.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309424094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.643 kcal (2) G-P(sol) polarization free energy of solvation -67.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds