Wall clock time and date at job start Mon Mar 30 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46852 * 2 1 4 4 C 1.50697 * 109.46929 * 239.99930 * 2 1 3 5 5 C 1.38229 * 120.00166 * 299.73000 * 4 2 1 6 6 C 1.38237 * 120.00297 * 179.78935 * 5 4 2 7 7 C 1.38239 * 119.99399 * 0.45827 * 6 5 4 8 8 C 1.38235 * 120.00433 * 359.77108 * 7 6 5 9 9 C 1.38233 * 119.99517 * 0.02562 * 8 7 6 10 10 C 1.52999 * 109.47228 * 119.99994 * 2 1 3 11 11 H 1.08997 * 109.90014 * 179.06607 * 10 2 1 12 12 C 1.54383 * 109.83351 * 300.00125 * 10 2 1 13 13 C 1.55307 * 102.25355 * 140.86675 * 12 10 2 14 14 C 1.54945 * 100.94248 * 325.86865 * 13 12 10 15 15 H 1.09003 * 110.30587 * 277.42762 * 14 13 12 16 16 C 1.50699 * 110.30698 * 155.36244 * 14 13 12 17 17 H 1.08005 * 120.00174 * 359.97438 * 16 14 13 18 18 C 1.37876 * 119.99872 * 180.02562 * 16 14 13 19 19 N 1.31513 * 120.00197 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00058 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47150 * 59.99332 * 20 18 16 22 22 H 1.48497 * 109.47295 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46862 * 299.99532 * 20 18 16 24 24 O 1.43236 * 109.82997 * 58.13330 * 10 2 1 25 25 H 1.09000 * 109.46729 * 299.99862 * 1 2 3 26 26 H 1.08991 * 109.47167 * 59.99717 * 1 2 3 27 27 H 1.09001 * 109.46826 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00075 * 359.97438 * 5 4 2 29 29 H 1.07999 * 120.00510 * 180.24616 * 6 5 4 30 30 H 1.08005 * 119.99801 * 179.78910 * 7 6 5 31 31 H 1.07999 * 120.00012 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.99798 * 179.97438 * 9 8 7 33 33 H 1.09006 * 110.84615 * 22.67621 * 12 10 2 34 34 H 1.08995 * 110.84672 * 259.06086 * 12 10 2 35 35 H 1.08998 * 111.12186 * 83.78838 * 13 12 10 36 36 H 1.08998 * 111.12130 * 207.94491 * 13 12 10 37 37 H 0.96997 * 120.00456 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7030 -2.0354 -1.4464 6 6 2.1601 -2.6859 -2.5773 7 6 2.9545 -2.0139 -3.4874 8 6 3.2878 -0.6902 -3.2691 9 6 2.8271 -0.0386 -2.1404 10 6 2.0401 -0.7212 1.2492 11 1 3.1299 -0.7398 1.2480 12 6 1.5301 0.0000 2.5154 13 6 1.1966 -1.1874 3.4593 14 6 0.7047 -2.2449 2.4392 15 1 -0.3426 -2.0724 2.1908 16 6 0.8875 -3.6332 2.9960 17 1 1.3120 -3.7690 3.9798 18 6 0.5138 -4.7302 2.2490 19 7 -0.0026 -4.5650 1.0508 20 14 0.7410 -6.4513 2.9387 21 1 -0.0406 -6.5887 4.1939 22 1 0.2642 -7.4488 1.9475 23 1 2.1798 -6.6844 3.2235 24 8 1.5314 -2.0599 1.2792 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.0861 -2.5617 -0.7331 29 1 1.8996 -3.7199 -2.7480 30 1 3.3145 -2.5230 -4.3693 31 1 3.9080 -0.1651 -3.9805 32 1 3.0878 0.9954 -1.9696 33 1 0.6362 0.5839 2.2957 34 1 2.3100 0.6292 2.9441 35 1 2.0865 -1.5330 3.9852 36 1 0.4063 -0.9211 4.1612 37 1 -0.2658 -5.3366 0.5254 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309424095.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:07 Heat of formation + Delta-G solvation = -33.887664 kcal Electronic energy + Delta-G solvation = -18340.789246 eV Core-core repulsion = 15661.347146 eV Total energy + Delta-G solvation = -2679.442099 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.33035 -37.85178 -33.90791 -32.29399 -30.96529 -30.27125 -29.04100 -27.68066 -24.93195 -23.10900 -21.98359 -20.95443 -20.21099 -18.96722 -16.60977 -16.19411 -15.62644 -14.84187 -14.74143 -14.28146 -14.14298 -13.48230 -13.20007 -12.73431 -12.54813 -12.33911 -12.02201 -11.74183 -11.42270 -11.28056 -10.97997 -10.90000 -10.80061 -10.59003 -10.31969 -10.29295 -10.09475 -9.76074 -9.61415 -9.06681 -8.54947 -8.33144 -8.13818 -7.76759 -6.01066 -4.12100 1.90646 2.02129 3.32618 3.37328 3.40045 4.37225 4.43233 4.93694 5.24752 5.31470 5.46942 5.51036 5.53345 5.57423 5.67126 5.83014 5.88580 5.97683 6.06410 6.16986 6.24166 6.28703 6.40491 6.51282 6.58254 6.64967 6.69617 6.77270 6.78894 6.88299 6.95404 7.00580 7.27807 7.39571 7.61333 7.72234 7.91063 8.29597 8.67112 9.04587 9.58445 11.06468 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.008547 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.256168 B = 3275.152574 C = 4255.592899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 H 0.068 0.932 4 C -0.071 4.071 5 C -0.082 4.082 6 C -0.126 4.126 7 C -0.134 4.134 8 C -0.138 4.138 9 C -0.128 4.128 10 C 0.082 3.918 11 H 0.056 0.944 12 C -0.156 4.156 13 C -0.148 4.148 14 C 0.211 3.789 15 H 0.029 0.971 16 C -0.532 4.532 17 H 0.059 0.941 18 C 0.080 3.920 19 N -0.864 5.864 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 O -0.348 6.348 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.164 0.836 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 8.489 -4.679 10.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 H 0.086 0.914 4 C -0.071 4.071 5 C -0.099 4.099 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.156 4.156 9 C -0.146 4.146 10 C 0.023 3.977 11 H 0.074 0.926 12 C -0.194 4.194 13 C -0.185 4.185 14 C 0.156 3.844 15 H 0.047 0.953 16 C -0.570 4.570 17 H 0.078 0.922 18 C -0.125 4.125 19 N -0.501 5.501 20 Si 0.717 3.283 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 O -0.267 6.267 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.182 0.818 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.883 8.240 -4.992 10.057 hybrid contribution 0.274 -0.748 0.390 0.887 sum 3.157 7.492 -4.603 9.342 Atomic orbital electron populations 1.21852 0.94247 1.03665 1.00170 1.20529 0.96590 0.97502 0.93229 0.91396 1.19850 0.97219 0.94722 0.95349 1.21870 0.97868 0.93891 0.96316 1.21239 0.98350 0.99844 0.94949 1.21047 0.99712 0.94933 0.99486 1.20903 1.01572 0.95145 0.97976 1.20987 0.99292 0.99290 0.95063 1.22474 0.96891 0.86547 0.91801 0.92629 1.23230 1.00766 0.98606 0.96793 1.23316 1.00770 0.95706 0.98753 1.20506 0.90529 0.92848 0.80553 0.95324 1.21088 1.43601 0.90397 1.01892 0.92247 1.25005 0.93866 0.99008 0.94623 1.69958 1.39967 1.30312 1.09828 0.86729 0.78627 0.84221 0.78757 1.20249 1.21238 1.20214 1.88794 1.67085 1.23616 1.47253 0.92783 0.93796 0.90479 0.81840 0.86614 0.87196 0.87179 0.87146 0.91131 0.92186 0.91835 0.92200 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.58 37.16 0.32 -2.13 16 2 C -0.06 -1.03 2.53 -91.77 -0.23 -1.27 16 3 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 4 C -0.07 -1.30 4.78 -104.63 -0.50 -1.80 16 5 C -0.08 -1.67 8.36 -39.59 -0.33 -2.00 16 6 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 7 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 8 C -0.14 -2.08 10.05 -39.58 -0.40 -2.48 16 9 C -0.13 -2.05 9.67 -39.58 -0.38 -2.43 16 10 C 0.08 1.61 3.23 -26.01 -0.08 1.52 16 11 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 12 C -0.16 -2.73 6.35 -24.78 -0.16 -2.89 16 13 C -0.15 -3.00 6.53 -24.48 -0.16 -3.16 16 14 C 0.21 5.21 3.20 -26.86 -0.09 5.12 16 15 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.53 -14.60 8.79 -34.44 -0.30 -14.90 16 17 H 0.06 1.60 7.76 -52.48 -0.41 1.20 16 18 C 0.08 2.22 5.43 -17.82 -0.10 2.12 16 19 N -0.86 -24.36 13.05 55.43 0.72 -23.64 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 O -0.35 -8.41 6.88 -35.23 -0.24 -8.65 16 25 H 0.05 0.86 6.09 -51.93 -0.32 0.54 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.57 6.91 -51.93 -0.36 1.21 16 28 H 0.16 3.90 5.74 -52.49 -0.30 3.60 16 29 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.50 7.95 -52.49 -0.42 1.08 16 33 H 0.07 1.14 5.77 -51.93 -0.30 0.84 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -28.41 297.69 -8.70 -37.11 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.44 Total: 4.04 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -3.21 Total: -29.49 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.72 Total: -23.64 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.24 Total: -8.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.41 -8.70 -37.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309424095.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.227 kcal (2) G-P(sol) polarization free energy of solvation -28.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds