Wall clock time and date at job start Mon Mar 30 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46852 * 2 1 4 4 C 1.50697 * 109.46929 * 239.99930 * 2 1 3 5 5 C 1.38229 * 120.00166 * 299.73000 * 4 2 1 6 6 C 1.38237 * 120.00297 * 179.78935 * 5 4 2 7 7 C 1.38239 * 119.99399 * 0.45827 * 6 5 4 8 8 C 1.38235 * 120.00433 * 359.77108 * 7 6 5 9 9 C 1.38233 * 119.99517 * 0.02562 * 8 7 6 10 10 C 1.52999 * 109.47228 * 119.99994 * 2 1 3 11 11 H 1.08997 * 109.90014 * 179.06607 * 10 2 1 12 12 C 1.54383 * 109.83351 * 300.00125 * 10 2 1 13 13 C 1.55307 * 102.25355 * 140.86675 * 12 10 2 14 14 C 1.54945 * 100.94248 * 325.86865 * 13 12 10 15 15 H 1.09003 * 110.30587 * 277.42762 * 14 13 12 16 16 C 1.50699 * 110.30698 * 155.36244 * 14 13 12 17 17 H 1.08005 * 120.00174 * 359.97438 * 16 14 13 18 18 C 1.37876 * 119.99872 * 180.02562 * 16 14 13 19 19 N 1.31513 * 120.00197 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00058 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47150 * 59.99332 * 20 18 16 22 22 H 1.48497 * 109.47295 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46862 * 299.99532 * 20 18 16 24 24 O 1.43236 * 109.82997 * 58.13330 * 10 2 1 25 25 H 1.09000 * 109.46729 * 299.99862 * 1 2 3 26 26 H 1.08991 * 109.47167 * 59.99717 * 1 2 3 27 27 H 1.09001 * 109.46826 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00075 * 359.97438 * 5 4 2 29 29 H 1.07999 * 120.00510 * 180.24616 * 6 5 4 30 30 H 1.08005 * 119.99801 * 179.78910 * 7 6 5 31 31 H 1.07999 * 120.00012 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.99798 * 179.97438 * 9 8 7 33 33 H 1.09006 * 110.84615 * 22.67621 * 12 10 2 34 34 H 1.08995 * 110.84672 * 259.06086 * 12 10 2 35 35 H 1.08998 * 111.12186 * 83.78838 * 13 12 10 36 36 H 1.08998 * 111.12130 * 207.94491 * 13 12 10 37 37 H 0.96997 * 120.00456 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7030 -2.0354 -1.4464 6 6 2.1601 -2.6859 -2.5773 7 6 2.9545 -2.0139 -3.4874 8 6 3.2878 -0.6902 -3.2691 9 6 2.8271 -0.0386 -2.1404 10 6 2.0401 -0.7212 1.2492 11 1 3.1299 -0.7398 1.2480 12 6 1.5301 0.0000 2.5154 13 6 1.1966 -1.1874 3.4593 14 6 0.7047 -2.2449 2.4392 15 1 -0.3426 -2.0724 2.1908 16 6 0.8875 -3.6332 2.9960 17 1 1.3120 -3.7690 3.9798 18 6 0.5138 -4.7302 2.2490 19 7 -0.0026 -4.5650 1.0508 20 14 0.7410 -6.4513 2.9387 21 1 -0.0406 -6.5887 4.1939 22 1 0.2642 -7.4488 1.9475 23 1 2.1798 -6.6844 3.2235 24 8 1.5314 -2.0599 1.2792 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.0861 -2.5617 -0.7331 29 1 1.8996 -3.7199 -2.7480 30 1 3.3145 -2.5230 -4.3693 31 1 3.9080 -0.1651 -3.9805 32 1 3.0878 0.9954 -1.9696 33 1 0.6362 0.5839 2.2957 34 1 2.3100 0.6292 2.9441 35 1 2.0865 -1.5330 3.9852 36 1 0.4063 -0.9211 4.1612 37 1 -0.2658 -5.3366 0.5254 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309424095.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:07 Heat of formation + Delta-G solvation = -48.300218 kcal Electronic energy + Delta-G solvation = -18341.414221 eV Core-core repulsion = 15661.347146 eV Total energy + Delta-G solvation = -2680.067074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79813 -39.34874 -35.49387 -34.24032 -32.60043 -31.58971 -30.54832 -29.32989 -26.72000 -24.64336 -23.31186 -22.51888 -21.87149 -20.41212 -18.61026 -17.53389 -17.22453 -16.71685 -16.15009 -15.85786 -15.69453 -14.92724 -14.70107 -14.39867 -13.99333 -13.83020 -13.58175 -13.47344 -12.85277 -12.81050 -12.77276 -12.44035 -12.38317 -12.24060 -11.99887 -11.91940 -11.60635 -11.34345 -11.10566 -10.91509 -10.62232 -9.76591 -9.63244 -9.33959 -8.10302 -6.29158 0.59497 0.69306 1.39651 1.41690 1.48679 2.41922 3.02557 3.10631 3.61102 3.92408 4.03118 4.13713 4.15466 4.27526 4.31482 4.41494 4.54568 4.55088 4.70427 4.74629 4.80914 4.92186 4.94125 4.97225 5.08573 5.16748 5.22286 5.34733 5.37404 5.42228 5.49187 5.66723 5.69143 5.81799 5.91257 6.03402 6.26230 6.34345 6.68149 7.15848 7.45753 8.95788 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.008547 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.256168 B = 3275.152574 C = 4255.592899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.054 4.054 3 H 0.105 0.895 4 C -0.086 4.086 5 C -0.115 4.115 6 C -0.147 4.147 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.125 4.125 10 C 0.069 3.931 11 H 0.052 0.948 12 C -0.141 4.141 13 C -0.143 4.143 14 C 0.207 3.793 15 H -0.004 1.004 16 C -0.557 4.557 17 H 0.057 0.943 18 C 0.030 3.970 19 N -0.891 5.891 20 Si 0.951 3.049 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.275 1.275 24 O -0.373 6.373 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.031 0.969 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.140 0.860 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 10.656 -5.280 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.072 4.072 3 H 0.123 0.877 4 C -0.086 4.086 5 C -0.133 4.133 6 C -0.165 4.165 7 C -0.149 4.149 8 C -0.148 4.148 9 C -0.143 4.143 10 C 0.011 3.989 11 H 0.070 0.930 12 C -0.179 4.179 13 C -0.181 4.181 14 C 0.151 3.849 15 H 0.013 0.987 16 C -0.595 4.595 17 H 0.075 0.925 18 C -0.173 4.173 19 N -0.528 5.528 20 Si 0.777 3.223 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.201 1.201 24 O -0.292 6.292 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.488 10.415 -5.582 12.640 hybrid contribution -0.197 -1.395 0.512 1.499 sum 4.290 9.020 -5.070 11.201 Atomic orbital electron populations 1.21753 0.94671 1.01127 1.01583 1.20528 0.96175 0.98771 0.91750 0.87737 1.19989 0.98119 0.93974 0.96505 1.21605 0.99402 0.95442 0.96805 1.21317 0.99727 0.99974 0.95486 1.21366 0.98398 0.95603 0.99515 1.21392 1.00652 0.94681 0.98077 1.21359 0.97830 1.00706 0.94403 1.22744 0.96712 0.85228 0.94248 0.92972 1.23187 1.02384 0.97632 0.94648 1.23208 1.00789 0.95662 0.98432 1.20311 0.89291 0.93212 0.82083 0.98676 1.21505 1.43609 0.92285 1.02093 0.92455 1.25797 0.93741 1.02812 0.94948 1.70115 1.40813 1.31004 1.10851 0.85742 0.78508 0.79698 0.78385 1.19114 1.20943 1.20071 1.88756 1.66908 1.26661 1.46912 0.91512 0.92087 0.94988 0.86438 0.87357 0.84256 0.83205 0.83777 0.89583 0.88902 0.92302 0.90809 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.58 71.98 0.62 -4.00 16 2 C -0.05 -1.79 2.53 -11.54 -0.03 -1.82 16 3 H 0.10 2.71 7.88 -2.39 -0.02 2.69 16 4 C -0.09 -3.07 4.78 -19.87 -0.09 -3.16 16 5 C -0.11 -4.88 8.36 22.27 0.19 -4.69 16 6 C -0.15 -5.52 10.05 22.27 0.22 -5.29 16 7 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 8 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 9 C -0.13 -3.58 9.67 22.27 0.22 -3.36 16 10 C 0.07 2.68 3.23 31.06 0.10 2.78 16 11 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 12 C -0.14 -4.64 6.35 31.86 0.20 -4.44 16 13 C -0.14 -5.79 6.53 32.05 0.21 -5.58 16 14 C 0.21 10.66 3.20 30.51 0.10 10.76 16 15 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 16 C -0.56 -31.78 8.79 25.60 0.23 -31.56 16 17 H 0.06 3.18 7.76 -2.91 -0.02 3.16 16 18 C 0.03 1.70 5.43 84.65 0.46 2.16 16 19 N -0.89 -53.15 13.05 21.45 0.28 -52.87 16 20 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 O -0.37 -18.83 6.88 -148.98 -1.02 -19.86 16 25 H 0.07 2.06 6.09 -2.39 -0.01 2.04 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.03 1.38 6.91 -2.39 -0.02 1.36 16 28 H 0.12 6.14 5.74 -2.91 -0.02 6.12 16 29 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.14 3.13 7.95 -2.91 -0.02 3.11 16 33 H 0.09 2.56 5.77 -2.38 -0.01 2.55 16 34 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.06 2.40 8.04 -2.39 -0.02 2.38 16 36 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -65.80 297.69 5.18 -60.62 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 1.04 Total: 20.39 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 2.86 Total: -55.06 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.28 Total: -52.87 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.02 Total: -19.86 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.80 5.18 -60.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309424095.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.320 kcal (2) G-P(sol) polarization free energy of solvation -65.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds