Wall clock time and date at job start Mon Mar 30 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86807 * 119.99744 * 2 1 4 4 H 1.48499 * 109.47202 * 270.00455 * 3 2 1 5 5 H 1.48501 * 109.46628 * 30.00622 * 3 2 1 6 6 H 1.48500 * 109.46898 * 149.99976 * 3 2 1 7 7 C 1.38748 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00030 * 359.97438 * 7 2 1 9 9 N 1.36808 * 119.99617 * 179.97438 * 7 2 1 10 10 C 1.39403 * 119.99803 * 180.02562 * 9 7 2 11 11 C 1.38928 * 120.11957 * 359.97438 * 10 9 7 12 12 C 1.38137 * 119.97960 * 180.02562 * 11 10 9 13 13 C 1.38365 * 120.23063 * 0.02562 * 12 11 10 14 14 C 1.38227 * 120.24570 * 0.02562 * 13 12 11 15 15 C 1.38701 * 120.01431 * 359.97438 * 14 13 12 16 16 N 1.39765 * 120.11600 * 180.02562 * 15 14 13 17 17 C 1.46845 * 111.00070 * 64.21374 * 16 15 14 18 18 C 1.53035 * 109.52561 * 174.16339 * 17 16 15 19 19 C 1.53115 * 109.28199 * 59.17416 * 18 17 16 20 20 C 1.53120 * 109.16404 * 302.35009 * 19 18 17 21 21 C 1.46850 * 111.00072 * 300.00149 * 16 15 14 22 22 H 0.96994 * 120.00340 * 359.97438 * 1 2 3 23 23 H 0.96997 * 120.00644 * 359.97438 * 9 7 2 24 24 H 1.07998 * 120.00872 * 0.02562 * 11 10 9 25 25 H 1.08004 * 119.87984 * 180.29540 * 12 11 10 26 26 H 1.08006 * 119.87490 * 180.02562 * 13 12 11 27 27 H 1.07996 * 119.99242 * 180.02562 * 14 13 12 28 28 H 1.09003 * 109.46005 * 294.17216 * 17 16 15 29 29 H 1.08995 * 109.46190 * 54.13949 * 17 16 15 30 30 H 1.09001 * 109.50205 * 299.23694 * 18 17 16 31 31 H 1.09003 * 109.53730 * 179.13682 * 18 17 16 32 32 H 1.08997 * 109.52477 * 182.44166 * 19 18 17 33 33 H 1.09005 * 109.57413 * 62.28542 * 19 18 17 34 34 H 1.08993 * 109.50129 * 297.71282 * 20 19 18 35 35 H 1.09001 * 109.53765 * 177.61080 * 20 19 18 36 36 H 1.09002 * 109.46224 * 305.85164 * 21 16 15 37 37 H 1.08998 * 109.46055 * 65.83405 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4403 0.7001 7 6 2.0100 -1.2016 -0.0005 8 1 1.4701 -2.1369 -0.0005 9 7 3.3781 -1.2015 -0.0011 10 6 4.0752 -2.4087 -0.0021 11 6 3.3831 -3.6133 -0.0021 12 6 4.0768 -4.8079 -0.0027 13 6 5.4604 -4.8100 -0.0027 14 6 6.1585 -3.6170 -0.0016 15 6 5.4723 -2.4116 -0.0011 16 7 6.1760 -1.2041 -0.0005 17 6 6.9563 -1.0491 -1.2349 18 6 7.5951 0.3412 -1.2650 19 6 8.5012 0.5079 -0.0420 20 6 7.6744 0.2940 1.2290 21 6 7.0333 -1.0950 1.1868 22 1 -0.4850 0.8400 0.0004 23 1 3.8631 -0.3615 -0.0014 24 1 2.3031 -3.6158 -0.0017 25 1 3.5372 -5.7435 -0.0075 26 1 5.9970 -5.7474 -0.0035 27 1 7.2385 -3.6234 -0.0020 28 1 7.7375 -1.8085 -1.2684 29 1 6.2994 -1.1658 -2.0968 30 1 6.8139 1.1011 -1.2454 31 1 8.1868 0.4509 -2.1739 32 1 8.9244 1.5123 -0.0364 33 1 9.3059 -0.2262 -0.0809 34 1 6.8945 1.0531 1.2878 35 1 8.3223 0.3694 2.1023 36 1 6.4323 -1.2450 2.0837 37 1 7.8142 -1.8541 1.1418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309566187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:57 Heat of formation + Delta-G solvation = 14.038720 kcal Electronic energy + Delta-G solvation = -18168.017842 eV Core-core repulsion = 15522.946738 eV Total energy + Delta-G solvation = -2645.071104 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.04040 -38.87035 -36.73142 -34.45416 -33.89572 -31.73014 -30.36462 -29.56891 -26.13014 -25.24886 -23.91861 -22.80243 -22.02652 -20.46988 -19.84617 -18.36690 -17.44089 -16.75553 -15.92240 -15.85888 -15.56651 -15.17855 -15.08933 -14.62808 -14.48930 -14.27646 -13.94606 -13.85062 -13.74593 -13.16977 -12.93141 -12.55082 -12.41475 -12.14171 -12.06572 -11.89378 -11.69618 -11.59001 -11.33799 -11.16573 -10.68564 -9.46602 -9.26312 -8.51646 -8.41967 -5.72862 0.67989 0.93641 1.27263 1.32595 1.37024 2.19612 2.87955 2.99774 3.30927 3.34206 3.92400 4.00997 4.04499 4.22615 4.34209 4.40724 4.46954 4.59753 4.62965 4.71286 4.85105 4.95295 4.96522 4.99433 5.02125 5.15774 5.21845 5.26020 5.33077 5.41393 5.50605 5.71151 5.77555 5.94564 6.00252 6.23317 6.24273 6.64600 6.78101 7.48263 7.55801 8.73961 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016516 B = 0.010313 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.884833 B = 2714.379308 C = 4078.226948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.018 4.018 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.303 4.303 8 H 0.084 0.916 9 N -0.599 5.599 10 C 0.214 3.786 11 C -0.235 4.235 12 C -0.067 4.067 13 C -0.214 4.214 14 C -0.088 4.088 15 C -0.036 4.036 16 N -0.511 5.511 17 C 0.063 3.937 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.117 4.117 21 C 0.064 3.936 22 H 0.275 0.725 23 H 0.389 0.611 24 H 0.098 0.902 25 H 0.131 0.869 26 H 0.135 0.865 27 H 0.127 0.873 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.289 -1.008 -0.081 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.432 4.432 8 H 0.102 0.898 9 N -0.210 5.210 10 C 0.097 3.903 11 C -0.260 4.260 12 C -0.086 4.086 13 C -0.236 4.236 14 C -0.109 4.109 15 C -0.135 4.135 16 N -0.233 5.233 17 C -0.063 4.063 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.063 4.063 22 H 0.084 0.916 23 H 0.225 0.775 24 H 0.116 0.884 25 H 0.149 0.851 26 H 0.153 0.847 27 H 0.145 0.855 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.492 -0.374 -0.062 17.496 hybrid contribution -0.035 0.345 -0.020 0.347 sum 17.457 -0.029 -0.082 17.458 Atomic orbital electron populations 1.69832 1.07123 1.28561 1.52041 1.25684 0.96262 1.01624 0.98011 0.85593 0.79136 0.79100 0.79362 1.19063 1.19962 1.17621 1.19305 0.81353 0.95490 1.47096 0.89787 1.40916 1.04275 1.05054 1.70747 1.18023 0.90422 0.86520 0.95301 1.20628 0.98999 0.92050 1.14292 1.21010 0.94802 0.96497 0.96251 1.20754 0.93576 0.97844 1.11432 1.21285 0.99319 0.92129 0.98171 1.18033 0.90052 0.89545 1.15918 1.59104 1.28552 1.32257 1.03396 1.22130 0.95398 0.97783 0.91029 1.21636 0.98846 0.95570 0.99471 1.21536 0.97430 1.02629 0.93387 1.21632 0.99079 0.95583 0.99189 1.22124 0.94531 0.97836 0.91805 0.91556 0.77532 0.88432 0.85128 0.84733 0.85476 0.93658 0.92821 0.92922 0.89579 0.90412 0.90990 0.93010 0.89577 0.92801 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.97 21.64 0.30 -56.05 16 2 C -0.02 -1.01 5.50 84.85 0.47 -0.54 16 3 Si 0.94 43.27 27.73 68.60 1.90 45.18 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.25 -10.94 6.52 99.48 0.65 -10.30 16 7 C -0.30 -17.29 10.04 84.04 0.84 -16.44 16 8 H 0.08 5.18 5.91 -2.91 -0.02 5.16 16 9 N -0.60 -30.19 5.23 -183.91 -0.96 -31.15 16 10 C 0.21 9.76 6.64 38.46 0.26 10.02 16 11 C -0.24 -10.43 9.30 22.41 0.21 -10.22 16 12 C -0.07 -2.38 10.03 22.28 0.22 -2.16 16 13 C -0.21 -6.78 10.04 22.30 0.22 -6.55 16 14 C -0.09 -2.88 8.70 22.38 0.19 -2.68 16 15 C -0.04 -1.37 4.71 38.34 0.18 -1.19 16 16 N -0.51 -17.28 3.79 -694.70 -2.63 -19.91 16 17 C 0.06 1.80 5.17 86.33 0.45 2.24 16 18 C -0.12 -2.72 6.09 30.64 0.19 -2.53 16 19 C -0.11 -2.18 6.00 30.67 0.18 -2.00 16 20 C -0.12 -2.71 6.09 30.65 0.19 -2.52 16 21 C 0.06 1.80 5.12 86.33 0.44 2.25 16 22 H 0.28 15.45 8.31 -92.71 -0.77 14.67 16 23 H 0.39 18.81 5.03 -92.71 -0.47 18.34 16 24 H 0.10 4.75 5.96 -2.91 -0.02 4.73 16 25 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 26 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 27 H 0.13 3.42 7.13 -2.91 -0.02 3.40 16 28 H 0.05 1.15 7.55 -2.39 -0.02 1.13 16 29 H 0.05 1.71 8.11 -2.39 -0.02 1.69 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.71 8.11 -2.39 -0.02 1.69 16 37 H 0.05 1.16 7.34 -2.39 -0.02 1.14 16 Total: -1.00 -62.85 293.29 3.19 -59.66 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.53 Total: 34.60 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 4.04 Total: -32.32 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -3.29 Total: -107.11 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.90 Total: 45.18 kcal Total: -62.85 3.19 -59.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309566187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.698 kcal (2) G-P(sol) polarization free energy of solvation -62.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds