Wall clock time and date at job start Mon Mar 30 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48499 * 109.47605 * 270.00349 * 3 2 1 5 5 H 1.48504 * 109.47009 * 30.00248 * 3 2 1 6 6 H 1.48497 * 109.47255 * 149.99754 * 3 2 1 7 7 C 1.37875 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00079 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00289 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47719 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47528 * 179.97438 * 10 9 7 12 12 C 1.46895 * 111.00135 * 183.15601 * 11 10 9 13 13 H 1.08994 * 109.47501 * 327.26394 * 12 11 10 14 14 C 1.50700 * 109.47516 * 207.26091 * 12 11 10 15 15 C 1.38668 * 120.42126 * 139.97816 * 14 12 11 16 16 C 1.38626 * 118.42181 * 180.02562 * 15 14 12 17 17 C 1.38224 * 119.16473 * 0.02562 * 16 15 14 18 18 N 1.31866 * 120.75893 * 359.97438 * 17 16 15 19 19 C 1.31875 * 121.72527 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.46755 * 87.26390 * 12 11 10 21 21 C 1.52999 * 117.49681 * 252.44774 * 20 12 11 22 22 C 1.52998 * 117.49707 * 183.79203 * 20 12 11 23 23 H 0.97001 * 119.99847 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47361 * 59.99267 * 9 7 2 25 25 H 1.09001 * 109.47274 * 299.99902 * 9 7 2 26 26 H 1.09005 * 109.46516 * 59.99801 * 10 9 7 27 27 H 1.09001 * 109.47042 * 300.00502 * 10 9 7 28 28 H 1.00901 * 111.00487 * 307.11950 * 11 10 9 29 29 H 1.07997 * 120.78822 * 0.02562 * 15 14 12 30 30 H 1.08000 * 120.42095 * 180.02562 * 16 15 14 31 31 H 1.07998 * 119.62529 * 180.02562 * 17 16 15 32 32 H 1.08006 * 119.61611 * 179.97438 * 19 18 17 33 33 H 1.08993 * 115.55321 * 38.11917 * 20 12 11 34 34 H 1.09005 * 117.49838 * 0.02562 * 21 20 12 35 35 H 1.09003 * 117.49910 * 145.01753 * 21 20 12 36 36 H 1.09000 * 117.50191 * 214.98061 * 22 20 12 37 37 H 1.09005 * 117.49864 * 359.97069 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4904 -2.6367 -0.0001 12 6 6.0168 -4.0060 -0.0757 13 1 5.3401 -4.6846 0.4433 14 6 7.3760 -4.0583 0.5731 15 6 7.7364 -5.1406 1.3616 16 6 8.9968 -5.1456 1.9388 17 6 9.8461 -4.0791 1.7114 18 7 9.4695 -3.0663 0.9556 19 6 8.2785 -3.0279 0.3907 20 6 6.1352 -4.4265 -1.5421 21 6 5.1276 -5.4514 -2.0666 22 6 6.5838 -5.8603 -1.8318 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8752 -0.6798 -0.8895 26 1 3.6584 -3.1502 -0.8904 27 1 3.6577 -3.1507 0.8896 28 1 5.8521 -2.0682 -0.7512 29 1 7.0516 -5.9600 1.5221 30 1 9.3112 -5.9725 2.5584 31 1 10.8298 -4.0755 2.1571 32 1 8.0052 -2.1812 -0.2216 33 1 6.4648 -3.6475 -2.2295 34 1 4.3801 -5.8258 -1.3671 35 1 4.7945 -5.3468 -3.0992 36 1 7.2083 -6.0246 -2.7099 37 1 6.7951 -6.5038 -0.9777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309574686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:56 Heat of formation + Delta-G solvation = 52.706982 kcal Electronic energy + Delta-G solvation = -17225.800046 eV Core-core repulsion = 14582.405724 eV Total energy + Delta-G solvation = -2643.394322 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32912 -38.11147 -35.22644 -33.16785 -32.40230 -31.51913 -29.49481 -26.12569 -23.90836 -23.17974 -22.59506 -22.27563 -20.65346 -20.09405 -17.13532 -16.86518 -16.21317 -15.90706 -15.42111 -14.98095 -14.19772 -13.98202 -13.80401 -13.53755 -13.25626 -13.06171 -12.68508 -12.36191 -11.98036 -11.67104 -11.57831 -11.28616 -11.03189 -10.60559 -10.31310 -10.11424 -9.88895 -9.81501 -9.71076 -9.36713 -9.24430 -8.89265 -8.54252 -8.01579 -6.05027 -4.03506 1.15547 1.29797 3.32038 3.39972 3.45858 3.68941 3.84944 4.32106 4.46071 4.50254 4.69934 4.81308 4.82444 4.97791 4.98426 5.04966 5.20244 5.29652 5.35742 5.49171 5.57025 5.62898 5.80276 5.84207 6.03452 6.06114 6.08252 6.16161 6.27493 6.33907 6.71331 6.74162 7.08715 7.34432 7.55027 7.69128 7.85104 8.01884 8.51966 8.98815 9.57443 11.08283 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024806 B = 0.005233 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.467578 B = 5349.695969 C = 6051.987998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.011 4.011 10 C 0.075 3.925 11 N -0.683 5.683 12 C 0.158 3.842 13 H 0.086 0.914 14 C -0.102 4.102 15 C -0.076 4.076 16 C -0.175 4.175 17 C 0.085 3.915 18 N -0.487 5.487 19 C 0.120 3.880 20 C -0.177 4.177 21 C -0.171 4.171 22 C -0.175 4.175 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.009 0.991 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.338 0.662 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.252 -12.023 -0.573 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.049 4.049 10 C -0.053 4.053 11 N -0.312 5.312 12 C 0.047 3.953 13 H 0.104 0.896 14 C -0.104 4.104 15 C -0.102 4.102 16 C -0.195 4.195 17 C -0.072 4.072 18 N -0.196 5.196 19 C -0.037 4.037 20 C -0.197 4.197 21 C -0.208 4.208 22 C -0.213 4.213 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.027 0.973 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.702 -11.152 -0.004 20.922 hybrid contribution -0.504 -0.055 -0.800 0.947 sum 17.198 -11.207 -0.804 20.543 Atomic orbital electron populations 1.69911 1.06334 1.26932 1.51096 1.24997 0.94715 0.99194 0.94452 0.86765 0.80536 0.83476 0.78470 1.20379 1.21430 1.18742 1.21041 0.89312 0.94492 1.51067 0.91125 1.19563 0.96785 0.91799 0.96730 1.21992 0.83433 1.00167 0.99685 1.60761 1.10431 1.08484 1.51559 1.19988 0.91789 0.92382 0.91167 0.89553 1.20802 0.96920 0.95037 0.97670 1.21420 0.96196 0.97604 0.94988 1.22043 0.95133 1.00442 1.01835 1.22685 0.99559 0.89708 0.95235 1.67700 1.17748 1.25843 1.08271 1.22534 0.88053 0.97073 0.96027 1.23140 1.05313 0.93383 0.97864 1.23020 0.92445 1.02940 1.02421 1.22872 0.97801 0.97581 1.03066 0.92722 0.95683 0.97265 0.95375 0.91784 0.84396 0.85306 0.85170 0.83262 0.82956 0.87635 0.88565 0.88718 0.89091 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.73 16 9 C -0.01 -0.26 4.27 -27.88 -0.12 -0.38 16 10 C 0.08 1.45 5.41 -3.83 -0.02 1.43 16 11 N -0.68 -10.87 5.70 -107.96 -0.62 -11.49 16 12 C 0.16 2.08 2.41 -68.86 -0.17 1.91 16 13 H 0.09 1.16 7.49 -51.93 -0.39 0.77 16 14 C -0.10 -1.29 4.71 -104.48 -0.49 -1.78 16 15 C -0.08 -0.83 9.67 -39.28 -0.38 -1.21 16 16 C -0.17 -1.74 10.11 -39.44 -0.40 -2.14 16 17 C 0.08 0.95 11.18 -17.54 -0.20 0.75 16 18 N -0.49 -6.71 10.36 -13.25 -0.14 -6.85 16 19 C 0.12 1.63 10.49 -17.55 -0.18 1.45 16 20 C -0.18 -2.08 5.06 -90.62 -0.46 -2.54 16 21 C -0.17 -1.92 10.18 -26.70 -0.27 -2.20 16 22 C -0.18 -1.77 9.97 -26.70 -0.27 -2.04 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 24 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 25 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 26 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 27 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 28 H 0.34 5.06 7.76 -39.29 -0.31 4.75 16 29 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.15 1.97 7.34 -52.48 -0.39 1.59 16 33 H 0.11 1.24 7.95 -51.93 -0.41 0.83 16 34 H 0.10 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.88 7.99 -51.93 -0.42 0.46 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -31.42 311.16 -8.98 -40.39 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.63 Total: 3.16 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -3.38 Total: -19.97 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.02 Total: -45.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.42 -8.98 -40.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309574686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.100 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds