Wall clock time and date at job start Mon Mar 30 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48499 * 109.47605 * 270.00349 * 3 2 1 5 5 H 1.48504 * 109.47009 * 30.00248 * 3 2 1 6 6 H 1.48497 * 109.47255 * 149.99754 * 3 2 1 7 7 C 1.37875 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00079 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00289 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47719 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47528 * 179.97438 * 10 9 7 12 12 C 1.46895 * 111.00135 * 183.15601 * 11 10 9 13 13 H 1.08994 * 109.47501 * 327.26394 * 12 11 10 14 14 C 1.50700 * 109.47516 * 207.26091 * 12 11 10 15 15 C 1.38668 * 120.42126 * 139.97816 * 14 12 11 16 16 C 1.38626 * 118.42181 * 180.02562 * 15 14 12 17 17 C 1.38224 * 119.16473 * 0.02562 * 16 15 14 18 18 N 1.31866 * 120.75893 * 359.97438 * 17 16 15 19 19 C 1.31875 * 121.72527 * 0.02562 * 18 17 16 20 20 C 1.53006 * 109.46755 * 87.26390 * 12 11 10 21 21 C 1.52999 * 117.49681 * 252.44774 * 20 12 11 22 22 C 1.52998 * 117.49707 * 183.79203 * 20 12 11 23 23 H 0.97001 * 119.99847 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47361 * 59.99267 * 9 7 2 25 25 H 1.09001 * 109.47274 * 299.99902 * 9 7 2 26 26 H 1.09005 * 109.46516 * 59.99801 * 10 9 7 27 27 H 1.09001 * 109.47042 * 300.00502 * 10 9 7 28 28 H 1.00901 * 111.00487 * 307.11950 * 11 10 9 29 29 H 1.07997 * 120.78822 * 0.02562 * 15 14 12 30 30 H 1.08000 * 120.42095 * 180.02562 * 16 15 14 31 31 H 1.07998 * 119.62529 * 180.02562 * 17 16 15 32 32 H 1.08006 * 119.61611 * 179.97438 * 19 18 17 33 33 H 1.08993 * 115.55321 * 38.11917 * 20 12 11 34 34 H 1.09005 * 117.49838 * 0.02562 * 21 20 12 35 35 H 1.09003 * 117.49910 * 145.01753 * 21 20 12 36 36 H 1.09000 * 117.50191 * 214.98061 * 22 20 12 37 37 H 1.09005 * 117.49864 * 359.97069 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4904 -2.6367 -0.0001 12 6 6.0168 -4.0060 -0.0757 13 1 5.3401 -4.6846 0.4433 14 6 7.3760 -4.0583 0.5731 15 6 7.7364 -5.1406 1.3616 16 6 8.9968 -5.1456 1.9388 17 6 9.8461 -4.0791 1.7114 18 7 9.4695 -3.0663 0.9556 19 6 8.2785 -3.0279 0.3907 20 6 6.1352 -4.4265 -1.5421 21 6 5.1276 -5.4514 -2.0666 22 6 6.5838 -5.8603 -1.8318 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8752 -0.6798 -0.8895 26 1 3.6584 -3.1502 -0.8904 27 1 3.6577 -3.1507 0.8896 28 1 5.8521 -2.0682 -0.7512 29 1 7.0516 -5.9600 1.5221 30 1 9.3112 -5.9725 2.5584 31 1 10.8298 -4.0755 2.1571 32 1 8.0052 -2.1812 -0.2216 33 1 6.4648 -3.6475 -2.2295 34 1 4.3801 -5.8258 -1.3671 35 1 4.7945 -5.3468 -3.0992 36 1 7.2083 -6.0246 -2.7099 37 1 6.7951 -6.5038 -0.9777 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309574686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:56 Heat of formation + Delta-G solvation = 32.929568 kcal Electronic energy + Delta-G solvation = -17226.657659 eV Core-core repulsion = 14582.405724 eV Total energy + Delta-G solvation = -2644.251935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23959 -39.10810 -36.59439 -34.91885 -33.60145 -32.70165 -31.04678 -27.48732 -25.29244 -24.33470 -23.48409 -23.16011 -22.26593 -21.23990 -18.97135 -18.00126 -17.26172 -16.93593 -16.52847 -16.25587 -15.87441 -15.16170 -15.08256 -14.64628 -14.58575 -14.43439 -13.89118 -13.65167 -13.40245 -12.97017 -12.88586 -12.50030 -12.36162 -11.95175 -11.88748 -11.73744 -11.44961 -11.37513 -11.02538 -10.76689 -10.65182 -10.28733 -9.80420 -9.30834 -8.29803 -6.33864 0.28245 0.43350 1.36152 1.39001 1.51587 2.36597 2.80784 2.94953 3.06200 3.20719 3.62938 3.76246 3.91336 4.01979 4.06035 4.14548 4.16350 4.31154 4.39310 4.49821 4.59229 4.65433 4.75545 4.76718 4.94642 4.96457 4.99476 5.14872 5.21727 5.24919 5.30091 5.44428 5.50036 5.64648 5.86080 6.12234 6.25130 6.48527 6.74618 7.13011 7.31106 8.86845 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024806 B = 0.005233 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.467578 B = 5349.695969 C = 6051.987998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.250 1.250 7 C -0.531 4.531 8 H 0.033 0.967 9 C -0.006 4.006 10 C 0.092 3.908 11 N -0.684 5.684 12 C 0.165 3.835 13 H 0.082 0.918 14 C -0.111 4.111 15 C -0.080 4.080 16 C -0.165 4.165 17 C 0.076 3.924 18 N -0.515 5.515 19 C 0.101 3.899 20 C -0.188 4.188 21 C -0.180 4.180 22 C -0.155 4.155 23 H 0.266 0.734 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.025 0.975 27 H 0.053 0.947 28 H 0.344 0.656 29 H 0.149 0.851 30 H 0.165 0.835 31 H 0.176 0.824 32 H 0.148 0.852 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.662 -12.599 -0.275 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.569 4.569 8 H 0.052 0.948 9 C -0.044 4.044 10 C -0.036 4.036 11 N -0.314 5.314 12 C 0.054 3.946 13 H 0.100 0.900 14 C -0.114 4.114 15 C -0.107 4.107 16 C -0.185 4.185 17 C -0.081 4.081 18 N -0.224 5.224 19 C -0.055 4.055 20 C -0.208 4.208 21 C -0.217 4.217 22 C -0.193 4.193 23 H 0.075 0.925 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.163 0.837 29 H 0.167 0.833 30 H 0.182 0.818 31 H 0.193 0.807 32 H 0.165 0.835 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 20.132 -11.745 0.285 23.310 hybrid contribution -1.244 0.006 -0.855 1.509 sum 18.889 -11.740 -0.570 22.247 Atomic orbital electron populations 1.70059 1.08260 1.28164 1.52647 1.25957 0.95565 1.03404 0.94066 0.85649 0.79428 0.78304 0.79201 1.19030 1.21082 1.17318 1.21387 0.91882 0.93184 1.50469 0.94837 1.19454 0.93637 0.94617 0.96667 1.21601 0.85751 0.97207 0.99078 1.60642 1.07920 1.10710 1.52152 1.19916 0.92005 0.90449 0.92222 0.89973 1.20727 0.96261 0.95801 0.98583 1.21735 0.97123 0.97548 0.94253 1.22407 0.94209 1.00807 1.01067 1.23230 1.00919 0.89381 0.94552 1.67683 1.17980 1.27345 1.09391 1.22528 0.88608 0.97523 0.96872 1.23049 1.06449 0.94374 0.96899 1.23058 0.93124 1.03134 1.02411 1.22929 0.96721 0.95964 1.03678 0.92477 0.96197 0.96295 0.95689 0.92815 0.83726 0.83338 0.81754 0.80669 0.83508 0.87760 0.89080 0.88527 0.87955 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 2 C 0.01 0.41 5.47 84.65 0.46 0.88 16 3 Si 0.95 44.93 27.47 68.60 1.88 46.82 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 7 C -0.53 -30.75 9.66 25.60 0.25 -30.51 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 9 C -0.01 -0.28 4.27 29.85 0.13 -0.15 16 10 C 0.09 3.58 5.41 86.30 0.47 4.05 16 11 N -0.68 -21.35 5.70 -495.46 -2.82 -24.17 16 12 C 0.16 4.17 2.41 44.17 0.11 4.27 16 13 H 0.08 2.14 7.49 -2.39 -0.02 2.12 16 14 C -0.11 -2.65 4.71 -19.77 -0.09 -2.74 16 15 C -0.08 -1.55 9.67 22.47 0.22 -1.33 16 16 C -0.17 -2.75 10.11 22.36 0.23 -2.52 16 17 C 0.08 1.50 11.18 84.68 0.95 2.45 16 18 N -0.52 -13.51 10.36 -195.84 -2.03 -15.53 16 19 C 0.10 2.65 10.49 84.67 0.89 3.54 16 20 C -0.19 -4.20 5.06 -10.79 -0.05 -4.26 16 21 C -0.18 -3.86 10.18 30.62 0.31 -3.55 16 22 C -0.16 -2.81 9.97 30.62 0.31 -2.51 16 23 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 24 H 0.02 0.95 7.20 -2.38 -0.02 0.94 16 25 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 26 H 0.02 0.97 8.05 -2.38 -0.02 0.95 16 27 H 0.05 2.18 8.12 -2.39 -0.02 2.16 16 28 H 0.34 10.04 7.76 -89.69 -0.70 9.35 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.15 3.79 7.34 -2.91 -0.02 3.77 16 33 H 0.10 2.36 7.95 -2.39 -0.02 2.34 16 34 H 0.09 2.03 8.07 -2.38 -0.02 2.01 16 35 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 1.66 7.99 -2.38 -0.02 1.64 16 Total: -1.00 -68.24 311.16 1.78 -66.45 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.30 Total: 18.49 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 4.16 Total: -32.38 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -4.55 Total: -99.38 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Total: -68.24 1.78 -66.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309574686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.384 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds