Wall clock time and date at job start Mon Mar 30 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86797 * 119.99775 * 2 1 4 4 H 1.48504 * 109.46793 * 269.99831 * 3 2 1 5 5 H 1.48501 * 109.47266 * 29.99646 * 3 2 1 6 6 H 1.48500 * 109.47264 * 149.99913 * 3 2 1 7 7 C 1.39867 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00049 * 197.64272 * 7 2 1 9 9 C 1.41207 * 120.00308 * 17.64780 * 7 2 1 10 10 C 1.41320 * 120.56571 * 23.61058 * 9 7 2 11 11 C 1.36573 * 118.40624 * 179.76823 * 10 9 7 12 12 C 1.39704 * 119.48836 * 0.50399 * 11 10 9 13 13 N 1.38371 * 119.42515 * 179.76221 * 12 11 10 14 14 C 1.46500 * 120.00388 * 359.72892 * 13 12 11 15 15 C 1.52994 * 109.47189 * 179.97438 * 14 13 12 16 16 C 1.55233 * 110.58474 * 289.87462 * 15 14 13 17 17 C 1.54892 * 102.58810 * 203.34063 * 16 15 14 18 18 C 1.54261 * 104.31457 * 37.93084 * 17 16 15 19 19 C 1.53870 * 106.59841 * 336.32167 * 18 17 16 20 20 N 1.32733 * 121.14214 * 359.48456 * 12 11 10 21 21 C 1.31489 * 121.73273 * 0.25760 * 20 12 11 22 22 H 0.96995 * 119.99670 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.80077 * 0.04799 * 10 9 7 24 24 H 1.07998 * 120.25083 * 180.26749 * 11 10 9 25 25 H 0.97006 * 119.99876 * 179.72198 * 13 12 11 26 26 H 1.09003 * 109.46777 * 59.99376 * 14 13 12 27 27 H 1.08998 * 109.47058 * 299.99889 * 14 13 12 28 28 H 1.09004 * 110.43595 * 52.45706 * 15 14 13 29 29 H 1.08991 * 110.90211 * 85.04660 * 16 15 14 30 30 H 1.09006 * 110.76597 * 321.56838 * 16 15 14 31 31 H 1.09000 * 110.48518 * 279.18194 * 17 16 15 32 32 H 1.09008 * 110.48292 * 156.67558 * 17 16 15 33 33 H 1.09002 * 110.03602 * 95.60953 * 18 17 16 34 34 H 1.09000 * 110.03206 * 216.99137 * 18 17 16 35 35 H 1.09007 * 110.03480 * 119.28743 * 19 18 17 36 36 H 1.08998 * 110.04027 * 240.66654 * 19 18 17 37 37 H 1.08003 * 119.81619 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4404 2.6527 0.7000 6 1 3.5406 1.4403 0.7000 7 6 2.0084 -1.2113 0.0005 8 1 3.0504 -1.2332 0.2840 9 6 1.3523 -2.4056 -0.3696 10 6 0.2034 -2.3693 -1.1918 11 6 -0.3935 -3.5511 -1.5267 12 6 0.1362 -4.7502 -1.0437 13 7 -0.4725 -5.9465 -1.3798 14 6 -1.6653 -5.9480 -2.2303 15 6 -2.1347 -7.3878 -2.4480 16 6 -1.1374 -8.1556 -3.3565 17 6 -2.0177 -9.2866 -3.9439 18 6 -3.3860 -8.6173 -4.1876 19 6 -3.4605 -7.4101 -3.2365 20 7 1.2164 -4.7621 -0.2725 21 6 1.8309 -3.6525 0.0743 22 1 -0.4849 0.8400 -0.0004 23 1 -0.1905 -1.4298 -1.5504 24 1 -1.2704 -3.5583 -2.1570 25 1 -0.1093 -6.7843 -1.0524 26 1 -1.4261 -5.4947 -3.1924 27 1 -2.4573 -5.3765 -1.7464 28 1 -2.2507 -7.8989 -1.4922 29 1 -0.3169 -8.5695 -2.7705 30 1 -0.7598 -7.5090 -4.1488 31 1 -2.1147 -10.1043 -3.2297 32 1 -1.5975 -9.6487 -4.8823 33 1 -3.4589 -8.2825 -5.2224 34 1 -4.1898 -9.3191 -3.9650 35 1 -3.5696 -6.4893 -3.8096 36 1 -4.3010 -7.5252 -2.5521 37 1 2.7079 -3.6983 0.7030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309577324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:12 Heat of formation + Delta-G solvation = -6.728324 kcal Electronic energy + Delta-G solvation = -17070.924247 eV Core-core repulsion = 14424.952617 eV Total energy + Delta-G solvation = -2645.971631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47043 -39.24740 -36.54321 -35.21161 -32.52662 -31.63992 -30.01553 -29.46933 -26.80205 -25.11738 -23.67517 -22.46113 -21.26210 -20.72731 -19.19074 -18.07262 -17.36293 -16.82212 -16.51838 -15.80346 -15.48924 -15.34886 -14.93209 -14.56472 -14.20709 -14.12718 -13.67187 -13.47947 -13.32952 -12.91588 -12.78464 -12.25830 -12.12770 -11.92847 -11.89795 -11.73482 -11.59206 -11.52088 -11.24464 -11.16794 -10.43503 -10.16910 -9.93369 -8.67869 -8.40762 -6.13013 0.88530 1.11758 1.41810 1.54740 1.57573 2.25032 2.67115 2.81606 3.69754 3.72685 3.80228 3.84690 4.21684 4.37769 4.47831 4.53452 4.62216 4.64693 4.71388 4.77539 4.85389 4.86400 4.92603 4.99857 5.10264 5.13914 5.27014 5.28877 5.35558 5.40834 5.49346 5.53037 5.59565 5.87902 5.98200 6.48934 6.63797 6.83544 6.92521 7.15546 7.84476 8.39489 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.052310 B = 0.004087 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.140095 B = 6849.215062 C = 7182.902181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.492 4.492 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.108 4.108 11 C -0.208 4.208 12 C 0.283 3.717 13 N -0.734 5.734 14 C 0.148 3.852 15 C -0.095 4.095 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.116 4.116 20 N -0.538 5.538 21 C -0.003 4.003 22 H 0.286 0.714 23 H 0.116 0.884 24 H 0.120 0.880 25 H 0.395 0.605 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.717 -11.034 -7.518 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.523 4.523 8 H 0.096 0.904 9 C -0.007 4.007 10 C -0.135 4.135 11 C -0.232 4.232 12 C 0.049 3.951 13 N -0.372 5.372 14 C 0.024 3.976 15 C -0.114 4.114 16 C -0.157 4.157 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.155 4.155 20 N -0.254 5.254 21 C -0.160 4.160 22 H 0.097 0.903 23 H 0.134 0.866 24 H 0.138 0.862 25 H 0.229 0.771 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.748 -11.589 -7.314 15.275 hybrid contribution 0.190 1.445 0.079 1.460 sum -6.558 -10.143 -7.235 14.080 Atomic orbital electron populations 1.69877 1.08913 1.30348 1.37304 1.26700 0.95487 1.04373 0.91427 0.85174 0.79015 0.75951 0.79363 1.18837 1.19501 1.18238 1.19579 0.98255 0.92024 1.42470 0.90401 1.18648 0.94326 0.94355 0.93354 1.21332 0.97594 0.96999 0.97613 1.21021 1.03214 0.92340 1.06638 1.18140 0.92395 0.86936 0.97644 1.43757 1.31526 1.04063 1.57899 1.21273 0.85905 0.97412 0.93032 1.22208 0.96146 0.93398 0.99656 1.22603 0.97395 0.97280 0.98414 1.22354 0.95143 0.97414 1.01032 1.22117 0.97543 0.96768 0.99435 1.22124 0.95989 0.99205 0.98145 1.66614 1.09846 1.32709 1.16222 1.22375 1.02162 0.87403 1.04021 0.90305 0.86602 0.86219 0.77099 0.93426 0.93740 0.90224 0.91959 0.92205 0.91167 0.91129 0.91465 0.90823 0.91584 0.90945 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.18 10.92 21.82 0.24 -43.94 16 2 C 0.03 1.69 5.17 85.22 0.44 2.13 16 3 Si 0.98 38.62 29.59 68.60 2.03 40.65 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 7 C -0.49 -26.90 9.07 23.39 0.21 -26.68 16 8 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 9 C 0.00 -0.09 5.59 -21.18 -0.12 -0.21 16 10 C -0.11 -5.82 8.74 22.64 0.20 -5.62 16 11 C -0.21 -9.96 9.24 22.23 0.21 -9.75 16 12 C 0.28 13.18 7.64 133.32 1.02 14.19 16 13 N -0.73 -26.56 5.60 -344.88 -1.93 -28.49 16 14 C 0.15 4.28 4.16 86.38 0.36 4.64 16 15 C -0.10 -2.05 2.88 -9.60 -0.03 -2.08 16 16 C -0.12 -2.43 6.22 32.01 0.20 -2.23 16 17 C -0.12 -1.94 6.82 31.67 0.22 -1.72 16 18 C -0.12 -1.81 6.80 31.32 0.21 -1.59 16 19 C -0.12 -2.06 6.37 31.32 0.20 -1.86 16 20 N -0.54 -27.10 10.37 -191.21 -1.98 -29.08 16 21 C 0.00 -0.14 10.97 85.36 0.94 0.80 16 22 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 23 H 0.12 6.38 6.19 -2.91 -0.02 6.37 16 24 H 0.12 5.03 6.64 -2.91 -0.02 5.01 16 25 H 0.39 13.33 8.56 -92.70 -0.79 12.54 16 26 H 0.05 1.41 7.78 -2.39 -0.02 1.39 16 27 H 0.04 1.34 7.91 -2.39 -0.02 1.32 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.34 7.98 -2.38 -0.02 1.32 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.19 7.84 -2.38 -0.02 1.17 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.14 6.63 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -60.77 301.65 2.67 -58.10 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.26 Total: 32.75 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 4.05 Total: -29.99 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.68 Total: -101.51 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -60.77 2.67 -58.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309577324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.367 kcal (2) G-P(sol) polarization free energy of solvation -60.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds