Wall clock time and date at job start Mon Mar 30 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99977 * 2 1 4 4 H 1.48500 * 109.47278 * 269.99788 * 3 2 1 5 5 H 1.48506 * 109.47239 * 30.00036 * 3 2 1 6 6 H 1.48505 * 109.46985 * 149.99617 * 3 2 1 7 7 C 1.37873 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08012 * 119.99885 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00604 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47570 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99863 * 179.97438 * 11 10 9 13 13 C 1.53784 * 113.61833 * 205.00056 * 12 11 10 14 14 C 1.53772 * 87.08496 * 220.01899 * 13 12 11 15 15 C 1.50707 * 113.61634 * 139.97651 * 14 13 12 16 16 C 1.38225 * 119.61615 * 324.04777 * 15 14 13 17 17 C 1.38623 * 119.15852 * 179.78706 * 16 15 14 18 18 C 1.38673 * 118.42214 * 0.46789 * 17 16 15 19 19 C 1.38181 * 119.16098 * 359.51346 * 18 17 16 20 20 N 1.31849 * 119.61917 * 144.06199 * 15 14 13 21 21 C 1.53783 * 87.17401 * 25.39053 * 14 13 12 22 22 H 0.97003 * 119.99684 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47259 * 59.99730 * 9 7 2 24 24 H 1.09006 * 109.46897 * 299.99866 * 9 7 2 25 25 H 1.08998 * 109.46927 * 59.99677 * 10 9 7 26 26 H 1.08992 * 109.46999 * 299.99836 * 10 9 7 27 27 H 1.00900 * 111.00481 * 303.95420 * 11 10 9 28 28 H 1.08998 * 112.85420 * 336.20025 * 12 11 10 29 29 H 1.09001 * 113.61045 * 105.46643 * 13 12 11 30 30 H 1.08999 * 113.69000 * 334.58590 * 13 12 11 31 31 H 1.08994 * 113.61863 * 270.80107 * 14 13 12 32 32 H 1.08000 * 120.42175 * 359.97438 * 16 15 14 33 33 H 1.08003 * 120.79108 * 180.22997 * 17 16 15 34 34 H 1.08004 * 120.41965 * 179.78286 * 18 17 16 35 35 H 1.08004 * 119.61745 * 180.25434 * 19 18 17 36 36 H 1.08997 * 113.61622 * 89.15525 * 21 14 13 37 37 H 1.09001 * 113.61294 * 220.05879 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4905 -2.6366 -0.0001 12 6 6.0169 -4.0080 0.0004 13 6 7.4299 -4.1253 0.5959 14 6 7.7351 -5.1293 -0.5282 15 6 9.1129 -4.9738 -1.1189 16 6 9.6604 -3.7117 -1.2525 17 6 10.9302 -3.5800 -1.7929 18 6 11.6009 -4.7271 -2.1895 19 6 10.9897 -5.9554 -2.0246 20 7 9.7820 -6.0433 -1.5024 21 6 6.6330 -4.4340 -1.3447 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6809 0.8905 24 1 3.8752 -0.6797 -0.8895 25 1 3.6585 -3.1502 -0.8903 26 1 3.6579 -3.1505 0.8896 27 1 5.8521 -2.1104 -0.7814 28 1 5.3107 -4.7324 0.4060 29 1 7.4484 -4.5666 1.5924 30 1 8.0109 -3.2055 0.5295 31 1 7.5003 -6.1612 -0.2677 32 1 9.1072 -2.8394 -0.9371 33 1 11.3847 -2.6069 -1.9060 34 1 12.5902 -4.6617 -2.6178 35 1 11.5071 -6.8539 -2.3272 36 1 6.9946 -3.5981 -1.9435 37 1 6.0091 -5.1242 -1.9127 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309577774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:21 Heat of formation + Delta-G solvation = 46.590874 kcal Electronic energy + Delta-G solvation = -16763.950966 eV Core-core repulsion = 14120.291430 eV Total energy + Delta-G solvation = -2643.659537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72617 -38.73732 -34.89314 -32.76566 -32.55448 -31.22916 -29.25160 -25.72581 -25.41340 -23.79974 -23.64304 -21.49840 -20.58507 -19.29134 -17.25287 -16.74512 -16.49202 -15.64639 -15.38728 -14.91286 -14.46444 -14.13766 -13.95579 -13.54792 -13.19251 -12.88252 -12.52094 -12.48016 -12.35884 -11.86919 -11.43256 -11.07286 -11.04125 -10.76879 -10.65422 -10.07905 -10.04513 -9.84915 -9.65126 -9.56320 -9.22177 -9.09559 -8.53269 -7.89121 -6.03894 -4.02259 0.89232 1.07676 3.32149 3.39754 3.45478 3.55322 4.01959 4.45978 4.46650 4.57069 4.62253 4.72180 4.83286 4.87516 4.92273 5.00252 5.11134 5.30684 5.40770 5.52963 5.64466 5.72296 5.77775 5.86645 5.96977 6.02165 6.08366 6.24479 6.27929 6.38245 6.50559 6.77645 7.15245 7.38597 7.62411 7.75598 7.82512 7.91081 8.53769 9.00333 9.58516 11.09497 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044497 B = 0.003680 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.107135 B = 7606.275033 C = 8010.597269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.011 4.011 10 C 0.072 3.928 11 N -0.682 5.682 12 C 0.072 3.928 13 C -0.120 4.120 14 C -0.067 4.067 15 C 0.150 3.850 16 C -0.168 4.168 17 C -0.074 4.074 18 C -0.185 4.185 19 C 0.098 3.902 20 N -0.486 5.486 21 C -0.155 4.155 22 H 0.263 0.737 23 H 0.025 0.975 24 H 0.008 0.992 25 H 0.023 0.977 26 H 0.065 0.935 27 H 0.337 0.663 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.083 0.917 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.914 -9.102 -3.514 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.049 4.049 10 C -0.056 4.056 11 N -0.311 5.311 12 C -0.040 4.040 13 C -0.159 4.159 14 C -0.087 4.087 15 C 0.012 3.988 16 C -0.188 4.188 17 C -0.100 4.100 18 C -0.205 4.205 19 C -0.059 4.059 20 N -0.195 5.195 21 C -0.195 4.195 22 H 0.073 0.927 23 H 0.043 0.957 24 H 0.026 0.974 25 H 0.041 0.959 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.171 0.829 36 H 0.102 0.898 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 22.402 -9.723 -2.720 24.572 hybrid contribution 0.669 1.445 -1.167 1.974 sum 23.071 -8.278 -3.887 24.817 Atomic orbital electron populations 1.69919 1.06336 1.26912 1.51166 1.25015 0.94734 0.99229 0.94499 0.86745 0.80498 0.83440 0.78425 1.20423 1.21439 1.18754 1.21080 0.89428 0.94514 1.50952 0.91112 1.19555 0.96677 0.91956 0.96663 1.21996 0.84063 0.99986 0.99525 1.60521 1.10024 1.11410 1.49193 1.22968 0.95157 0.91519 0.94318 1.23261 0.97057 0.98256 0.97341 1.21407 0.88912 1.00826 0.97511 1.21177 0.95508 0.88449 0.93652 1.22030 0.96444 0.99105 1.01194 1.21608 0.94283 0.99126 0.94989 1.22115 1.01670 0.93869 1.02800 1.22742 0.91043 0.97362 0.94758 1.67520 1.08059 1.33356 1.10546 1.23825 0.97051 1.00525 0.98094 0.92734 0.95679 0.97361 0.95893 0.91664 0.84518 0.88468 0.91021 0.89338 0.87580 0.84351 0.84872 0.85011 0.82947 0.89836 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.26 4.30 -27.89 -0.12 -0.38 16 10 C 0.07 1.44 5.47 -3.83 -0.02 1.41 16 11 N -0.68 -11.00 6.62 -105.77 -0.70 -11.70 16 12 C 0.07 0.94 4.18 -66.81 -0.28 0.66 16 13 C -0.12 -1.37 7.25 -25.92 -0.19 -1.56 16 14 C -0.07 -0.75 4.15 -90.96 -0.38 -1.13 16 15 C 0.15 1.74 6.19 -82.59 -0.51 1.23 16 16 C -0.17 -1.71 8.70 -39.44 -0.34 -2.06 16 17 C -0.07 -0.64 10.18 -39.28 -0.40 -1.04 16 18 C -0.18 -1.51 10.11 -39.44 -0.40 -1.91 16 19 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 20 N -0.49 -5.91 10.27 -9.47 -0.10 -6.01 16 21 C -0.16 -1.82 7.18 -25.82 -0.19 -2.00 16 22 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 24 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 27 H 0.34 5.09 8.20 -39.29 -0.32 4.77 16 28 H 0.10 1.30 7.87 -51.93 -0.41 0.89 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.99 6.21 -51.93 -0.32 0.66 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.14 1.28 6.56 -52.49 -0.34 0.94 16 33 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.08 0.96 7.45 -51.93 -0.39 0.57 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 305.33 15.07 4.60 4.60 Total: -1.00 -31.90 305.33 -9.06 -40.96 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.52 Total: 1.72 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -3.45 Total: -19.46 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.02 Total: -45.02 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.90 -9.06 -40.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309577774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.549 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds