Wall clock time and date at job start Mon Mar 30 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99977 * 2 1 4 4 H 1.48500 * 109.47278 * 269.99788 * 3 2 1 5 5 H 1.48506 * 109.47239 * 30.00036 * 3 2 1 6 6 H 1.48505 * 109.46985 * 149.99617 * 3 2 1 7 7 C 1.37873 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08012 * 119.99885 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00604 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47570 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99863 * 179.97438 * 11 10 9 13 13 C 1.53784 * 113.61833 * 205.00056 * 12 11 10 14 14 C 1.53772 * 87.08496 * 220.01899 * 13 12 11 15 15 C 1.50707 * 113.61634 * 139.97651 * 14 13 12 16 16 C 1.38225 * 119.61615 * 324.04777 * 15 14 13 17 17 C 1.38623 * 119.15852 * 179.78706 * 16 15 14 18 18 C 1.38673 * 118.42214 * 0.46789 * 17 16 15 19 19 C 1.38181 * 119.16098 * 359.51346 * 18 17 16 20 20 N 1.31849 * 119.61917 * 144.06199 * 15 14 13 21 21 C 1.53783 * 87.17401 * 25.39053 * 14 13 12 22 22 H 0.97003 * 119.99684 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47259 * 59.99730 * 9 7 2 24 24 H 1.09006 * 109.46897 * 299.99866 * 9 7 2 25 25 H 1.08998 * 109.46927 * 59.99677 * 10 9 7 26 26 H 1.08992 * 109.46999 * 299.99836 * 10 9 7 27 27 H 1.00900 * 111.00481 * 303.95420 * 11 10 9 28 28 H 1.08998 * 112.85420 * 336.20025 * 12 11 10 29 29 H 1.09001 * 113.61045 * 105.46643 * 13 12 11 30 30 H 1.08999 * 113.69000 * 334.58590 * 13 12 11 31 31 H 1.08994 * 113.61863 * 270.80107 * 14 13 12 32 32 H 1.08000 * 120.42175 * 359.97438 * 16 15 14 33 33 H 1.08003 * 120.79108 * 180.22997 * 17 16 15 34 34 H 1.08004 * 120.41965 * 179.78286 * 18 17 16 35 35 H 1.08004 * 119.61745 * 180.25434 * 19 18 17 36 36 H 1.08997 * 113.61622 * 89.15525 * 21 14 13 37 37 H 1.09001 * 113.61294 * 220.05879 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4905 -2.6366 -0.0001 12 6 6.0169 -4.0080 0.0004 13 6 7.4299 -4.1253 0.5959 14 6 7.7351 -5.1293 -0.5282 15 6 9.1129 -4.9738 -1.1189 16 6 9.6604 -3.7117 -1.2525 17 6 10.9302 -3.5800 -1.7929 18 6 11.6009 -4.7271 -2.1895 19 6 10.9897 -5.9554 -2.0246 20 7 9.7820 -6.0433 -1.5024 21 6 6.6330 -4.4340 -1.3447 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6809 0.8905 24 1 3.8752 -0.6797 -0.8895 25 1 3.6585 -3.1502 -0.8903 26 1 3.6579 -3.1505 0.8896 27 1 5.8521 -2.1104 -0.7814 28 1 5.3107 -4.7324 0.4060 29 1 7.4484 -4.5666 1.5924 30 1 8.0109 -3.2055 0.5295 31 1 7.5003 -6.1612 -0.2677 32 1 9.1072 -2.8394 -0.9371 33 1 11.3847 -2.6069 -1.9060 34 1 12.5902 -4.6617 -2.6178 35 1 11.5071 -6.8539 -2.3272 36 1 6.9946 -3.5981 -1.9435 37 1 6.0091 -5.1242 -1.9127 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309577774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:21 Heat of formation + Delta-G solvation = 25.706175 kcal Electronic energy + Delta-G solvation = -16764.856595 eV Core-core repulsion = 14120.291430 eV Total energy + Delta-G solvation = -2644.565165 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.51579 -39.68047 -36.45681 -34.59067 -33.39007 -32.29441 -30.85002 -26.79247 -26.57741 -25.18218 -24.43154 -22.42983 -22.35165 -20.33345 -18.97703 -17.91696 -17.28701 -16.65496 -16.38931 -16.22939 -15.89430 -15.40481 -15.01255 -14.94444 -14.51219 -14.08707 -13.75959 -13.65331 -13.41877 -13.13706 -12.89009 -12.63721 -12.28219 -12.00073 -11.82712 -11.77404 -11.51085 -11.39430 -11.18563 -10.77292 -10.76067 -10.33702 -9.82623 -9.20317 -8.29174 -6.33933 0.18932 0.39459 1.37622 1.40527 1.53578 2.37987 2.82909 3.06551 3.15672 3.51559 3.58248 3.84632 3.95485 4.01519 4.05966 4.10903 4.26049 4.29714 4.45734 4.59192 4.65479 4.75832 4.78318 4.85548 4.92043 4.97993 5.07623 5.10314 5.21428 5.31602 5.33488 5.45781 5.53907 5.65667 5.83431 6.20846 6.27384 6.57912 6.75577 7.10114 7.31132 8.87660 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044497 B = 0.003680 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.107135 B = 7606.275033 C = 8010.597269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.005 4.005 10 C 0.086 3.914 11 N -0.680 5.680 12 C 0.064 3.936 13 C -0.109 4.109 14 C -0.059 4.059 15 C 0.127 3.873 16 C -0.178 4.178 17 C -0.078 4.078 18 C -0.178 4.178 19 C 0.083 3.917 20 N -0.517 5.517 21 C -0.148 4.148 22 H 0.267 0.733 23 H 0.023 0.977 24 H 0.019 0.981 25 H 0.016 0.984 26 H 0.055 0.945 27 H 0.345 0.655 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.089 0.911 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.060 -8.050 -4.034 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.043 4.043 10 C -0.043 4.043 11 N -0.309 5.309 12 C -0.047 4.047 13 C -0.148 4.148 14 C -0.078 4.078 15 C -0.010 4.010 16 C -0.197 4.197 17 C -0.104 4.104 18 C -0.198 4.198 19 C -0.073 4.073 20 N -0.227 5.227 21 C -0.188 4.188 22 H 0.075 0.925 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.163 0.837 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.192 0.808 36 H 0.107 0.893 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 25.572 -8.695 -3.244 27.203 hybrid contribution -0.292 1.009 -1.031 1.472 sum 25.280 -7.685 -4.275 26.766 Atomic orbital electron populations 1.70076 1.08392 1.28239 1.52631 1.26043 0.95642 1.03708 0.93980 0.85573 0.79475 0.77842 0.79216 1.19037 1.21079 1.16907 1.21443 0.92120 0.93164 1.50608 0.95131 1.19445 0.93396 0.94610 0.96817 1.21652 0.86596 0.97226 0.98809 1.60447 1.07299 1.13426 1.49778 1.23060 0.95886 0.89816 0.95904 1.23184 0.95378 0.98650 0.97591 1.21258 0.89123 1.00368 0.97071 1.21194 0.95675 0.89158 0.94946 1.22168 0.97342 0.98664 1.01544 1.21997 0.93716 1.00607 0.94036 1.22483 1.02711 0.93066 1.01508 1.23225 0.90537 0.99097 0.94490 1.67471 1.09455 1.34052 1.11718 1.23749 0.97027 1.00636 0.97338 0.92459 0.95823 0.96250 0.96534 0.92688 0.83638 0.89016 0.90639 0.88676 0.88070 0.83744 0.82275 0.81914 0.80800 0.89302 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 2 C 0.00 0.17 5.47 84.65 0.46 0.63 16 3 Si 0.96 44.59 27.47 68.60 1.88 46.48 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 7 C -0.53 -31.31 9.66 25.60 0.25 -31.06 16 8 H 0.03 1.96 7.99 -2.90 -0.02 1.94 16 9 C 0.00 -0.23 4.30 29.85 0.13 -0.10 16 10 C 0.09 3.40 5.47 86.30 0.47 3.88 16 11 N -0.68 -21.00 6.62 -488.56 -3.23 -24.23 16 12 C 0.06 1.62 4.18 45.50 0.19 1.81 16 13 C -0.11 -2.34 7.25 31.12 0.23 -2.12 16 14 C -0.06 -1.26 4.15 -11.01 -0.05 -1.31 16 15 C 0.13 2.81 6.19 42.56 0.26 3.07 16 16 C -0.18 -3.26 8.70 22.36 0.19 -3.07 16 17 C -0.08 -1.12 10.18 22.47 0.23 -0.89 16 18 C -0.18 -2.37 10.11 22.36 0.23 -2.14 16 19 C 0.08 1.42 11.18 84.67 0.95 2.37 16 20 N -0.52 -12.03 10.27 -183.88 -1.89 -13.92 16 21 C -0.15 -3.33 7.18 31.18 0.22 -3.10 16 22 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 23 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 24 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 25 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 2.26 8.13 -2.39 -0.02 2.24 16 27 H 0.34 9.74 8.20 -89.69 -0.74 9.00 16 28 H 0.09 2.44 7.87 -2.39 -0.02 2.42 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.93 6.21 -2.39 -0.01 1.91 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.14 2.36 6.56 -2.91 -0.02 2.34 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.09 1.91 7.45 -2.39 -0.02 1.89 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -69.46 305.33 1.09 -68.37 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.26 Total: 15.50 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 3.76 Total: -32.02 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -4.82 Total: -98.33 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.48 kcal Total: -69.46 1.09 -68.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309577774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.077 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds