Wall clock time and date at job start Mon Mar 30 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46976 * 240.00526 * 3 2 1 5 5 H 1.48494 * 109.47024 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47167 * 120.00261 * 3 2 1 7 7 C 1.38816 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00054 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99960 * 174.94454 * 9 7 2 11 11 H 1.08994 * 109.47384 * 32.11904 * 10 9 7 12 12 C 1.50697 * 109.46879 * 272.12096 * 10 9 7 13 13 C 1.38228 * 119.61934 * 2.17514 * 12 10 9 14 14 C 1.38630 * 119.16155 * 179.74490 * 13 12 10 15 15 C 1.38676 * 118.41822 * 0.47790 * 14 13 12 16 16 C 1.38183 * 119.16378 * 359.50330 * 15 14 13 17 17 N 1.31855 * 119.61762 * 182.15203 * 12 10 9 18 18 C 1.52997 * 109.47067 * 152.11940 * 10 9 7 19 19 C 1.54270 * 110.03314 * 57.56916 * 18 10 9 20 20 C 1.54964 * 104.15765 * 217.13598 * 19 18 10 21 21 C 1.54885 * 102.77947 * 37.88460 * 20 19 18 22 22 C 1.53866 * 110.03833 * 300.34708 * 18 10 9 23 23 H 0.96998 * 120.00012 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99802 * 354.93403 * 9 7 2 25 25 H 1.07999 * 120.42130 * 359.97438 * 13 12 10 26 26 H 1.07996 * 120.79125 * 180.23096 * 14 13 12 27 27 H 1.07997 * 120.42098 * 179.78244 * 15 14 13 28 28 H 1.08005 * 119.61430 * 180.26066 * 16 15 14 29 29 H 1.09007 * 110.01712 * 178.95025 * 18 10 9 30 30 H 1.08999 * 110.48092 * 335.77828 * 19 18 10 31 31 H 1.08995 * 110.49203 * 98.42136 * 19 18 10 32 32 H 1.09001 * 110.71655 * 279.56698 * 20 19 18 33 33 H 1.09006 * 110.92373 * 156.29375 * 20 19 18 34 34 H 1.08998 * 110.48524 * 203.40584 * 21 20 19 35 35 H 1.08996 * 110.60388 * 80.81825 * 21 20 19 36 36 H 1.09005 * 110.03614 * 238.57360 * 22 18 10 37 37 H 1.09006 * 110.03201 * 359.94786 * 22 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0537 -3.6543 -0.1129 11 1 3.0285 -3.5565 0.3649 12 6 2.2399 -3.9992 -1.5680 13 6 1.7832 -3.1291 -2.5402 14 6 1.9643 -3.4533 -3.8758 15 6 2.5918 -4.6507 -4.1851 16 6 3.0220 -5.4702 -3.1591 17 7 2.8370 -5.1272 -1.8991 18 6 1.2569 -4.7637 0.5763 19 6 -0.1486 -4.8723 -0.0503 20 6 -1.0751 -5.1923 1.1500 21 6 -0.4719 -4.3311 2.2874 22 6 1.0516 -4.4203 2.0621 23 1 -0.4850 0.8400 0.0004 24 1 0.3584 -2.3897 0.0740 25 1 1.2949 -2.2066 -2.2628 26 1 1.6212 -2.7911 -4.6569 27 1 2.7463 -4.9370 -5.2149 28 1 3.5153 -6.4024 -3.3917 29 1 1.7821 -5.7142 0.4819 30 1 -0.4347 -3.9270 -0.5114 31 1 -0.1787 -5.6794 -0.7822 32 1 -1.0284 -6.2519 1.4014 33 1 -2.1016 -4.8913 0.9405 34 1 -0.7384 -4.7436 3.2605 35 1 -0.8097 -3.2980 2.2066 36 1 1.4765 -5.2044 2.6888 37 1 1.5204 -3.4635 2.2924 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309607293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:08 Heat of formation + Delta-G solvation = 34.329427 kcal Electronic energy + Delta-G solvation = -18290.378621 eV Core-core repulsion = 15646.187388 eV Total energy + Delta-G solvation = -2644.191233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.76727 -37.86779 -34.45012 -32.23561 -31.59293 -29.67590 -28.44050 -28.06986 -24.76062 -23.31184 -22.62081 -21.12962 -20.07680 -18.56890 -17.33760 -16.40684 -15.61362 -15.20474 -14.69309 -14.60993 -14.22720 -13.69655 -13.20210 -13.04695 -12.73703 -12.66375 -12.32094 -12.08345 -11.20143 -10.96277 -10.87182 -10.57087 -10.49954 -10.32323 -10.27047 -10.21630 -10.06528 -9.87821 -9.58280 -9.23369 -9.16599 -8.67786 -8.23411 -7.06850 -5.83906 -3.14295 1.75836 1.90549 3.40296 3.45709 3.46357 4.43075 4.53092 4.88010 5.15714 5.20606 5.30686 5.31347 5.47596 5.54242 5.65757 5.77773 5.93676 6.02316 6.03189 6.06348 6.16763 6.23059 6.31045 6.36710 6.41432 6.48275 6.56965 6.63519 6.68330 6.81279 6.89787 6.94107 7.05374 7.12343 7.43168 7.67654 8.34592 8.65276 9.46966 10.01423 10.38801 11.37338 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.010515 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.922812 B = 2662.109932 C = 3998.457692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.006 4.006 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.711 5.711 10 C 0.225 3.775 11 H 0.069 0.931 12 C 0.122 3.878 13 C -0.136 4.136 14 C -0.092 4.092 15 C -0.194 4.194 16 C 0.080 3.920 17 N -0.490 5.490 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.115 4.115 23 H 0.257 0.743 24 H 0.389 0.611 25 H 0.158 0.842 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.142 0.858 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 -9.806 -2.642 10.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.112 3.888 11 H 0.087 0.913 12 C -0.019 4.019 13 C -0.156 4.156 14 C -0.118 4.118 15 C -0.214 4.214 16 C -0.078 4.078 17 N -0.200 5.200 18 C -0.103 4.103 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.152 4.152 23 H 0.066 0.934 24 H 0.226 0.774 25 H 0.176 0.824 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.159 0.841 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.338 -10.177 -1.966 10.451 hybrid contribution -0.049 1.534 -1.004 1.834 sum 1.288 -8.643 -2.970 9.230 Atomic orbital electron populations 1.69648 1.04995 1.25904 1.56984 1.24714 0.95432 0.97528 1.02579 0.86332 0.78621 0.83689 0.77934 1.21286 1.21733 1.21214 1.19199 0.91031 0.83934 1.43392 0.91254 1.42535 1.06660 0.99527 1.86499 1.19120 0.95795 0.86862 0.86981 0.91338 1.23016 0.90823 0.88330 0.99682 1.22425 0.98992 1.02182 0.92000 1.21618 0.96988 0.96026 0.97127 1.21939 1.02718 0.96692 1.00096 1.22540 0.97791 0.98952 0.88470 1.67483 1.14157 1.18082 1.20272 1.21906 0.95772 0.98020 0.94565 1.22396 0.94732 1.01451 0.96959 1.22469 0.98596 0.98930 0.96009 1.22315 0.95790 1.00563 0.97159 1.22123 0.96111 1.01832 0.95169 0.93359 0.77449 0.82416 0.85925 0.86189 0.84059 0.90859 0.90652 0.93024 0.92514 0.92265 0.92918 0.90877 0.93229 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.24 13.06 55.49 0.72 -25.51 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.90 21.62 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.33 8.96 -15.06 -0.13 -6.47 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.71 -16.44 3.02 -54.56 -0.16 -16.60 16 10 C 0.22 4.54 2.32 -69.09 -0.16 4.38 16 11 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 12 C 0.12 2.42 5.53 -82.59 -0.46 1.96 16 13 C -0.14 -2.73 9.20 -39.44 -0.36 -3.09 16 14 C -0.09 -1.55 10.18 -39.27 -0.40 -1.95 16 15 C -0.19 -2.91 10.11 -39.44 -0.40 -3.31 16 16 C 0.08 1.26 11.18 -17.55 -0.20 1.06 16 17 N -0.49 -9.05 9.97 -9.47 -0.09 -9.15 16 18 C -0.08 -1.46 2.70 -89.51 -0.24 -1.70 16 19 C -0.12 -2.02 5.51 -25.03 -0.14 -2.16 16 20 C -0.12 -1.86 6.91 -24.70 -0.17 -2.03 16 21 C -0.12 -1.93 6.83 -25.08 -0.17 -2.11 16 22 C -0.11 -1.93 6.19 -25.62 -0.16 -2.09 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.39 9.52 6.04 -40.82 -0.25 9.27 16 25 H 0.16 3.61 6.33 -52.49 -0.33 3.27 16 26 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.07 1.26 7.99 -51.93 -0.41 0.85 16 30 H 0.07 1.47 6.18 -51.93 -0.32 1.15 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.52 7.36 -51.93 -0.38 1.13 16 LS Contribution 299.16 15.07 4.51 4.51 Total: -1.00 -27.42 299.16 -8.60 -36.02 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.47 Total: 11.89 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -3.09 Total: -17.75 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.47 Total: -51.26 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.42 -8.60 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309607293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.347 kcal (2) G-P(sol) polarization free energy of solvation -27.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds