Wall clock time and date at job start Mon Mar 30 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00018 * 2 1 4 4 H 1.48503 * 109.46976 * 240.00526 * 3 2 1 5 5 H 1.48494 * 109.47024 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47167 * 120.00261 * 3 2 1 7 7 C 1.38816 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00054 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99960 * 174.94454 * 9 7 2 11 11 H 1.08994 * 109.47384 * 32.11904 * 10 9 7 12 12 C 1.50697 * 109.46879 * 272.12096 * 10 9 7 13 13 C 1.38228 * 119.61934 * 2.17514 * 12 10 9 14 14 C 1.38630 * 119.16155 * 179.74490 * 13 12 10 15 15 C 1.38676 * 118.41822 * 0.47790 * 14 13 12 16 16 C 1.38183 * 119.16378 * 359.50330 * 15 14 13 17 17 N 1.31855 * 119.61762 * 182.15203 * 12 10 9 18 18 C 1.52997 * 109.47067 * 152.11940 * 10 9 7 19 19 C 1.54270 * 110.03314 * 57.56916 * 18 10 9 20 20 C 1.54964 * 104.15765 * 217.13598 * 19 18 10 21 21 C 1.54885 * 102.77947 * 37.88460 * 20 19 18 22 22 C 1.53866 * 110.03833 * 300.34708 * 18 10 9 23 23 H 0.96998 * 120.00012 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99802 * 354.93403 * 9 7 2 25 25 H 1.07999 * 120.42130 * 359.97438 * 13 12 10 26 26 H 1.07996 * 120.79125 * 180.23096 * 14 13 12 27 27 H 1.07997 * 120.42098 * 179.78244 * 15 14 13 28 28 H 1.08005 * 119.61430 * 180.26066 * 16 15 14 29 29 H 1.09007 * 110.01712 * 178.95025 * 18 10 9 30 30 H 1.08999 * 110.48092 * 335.77828 * 19 18 10 31 31 H 1.08995 * 110.49203 * 98.42136 * 19 18 10 32 32 H 1.09001 * 110.71655 * 279.56698 * 20 19 18 33 33 H 1.09006 * 110.92373 * 156.29375 * 20 19 18 34 34 H 1.08998 * 110.48524 * 203.40584 * 21 20 19 35 35 H 1.08996 * 110.60388 * 80.81825 * 21 20 19 36 36 H 1.09005 * 110.03614 * 238.57360 * 22 18 10 37 37 H 1.09006 * 110.03201 * 359.94786 * 22 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0537 -3.6543 -0.1129 11 1 3.0285 -3.5565 0.3649 12 6 2.2399 -3.9992 -1.5680 13 6 1.7832 -3.1291 -2.5402 14 6 1.9643 -3.4533 -3.8758 15 6 2.5918 -4.6507 -4.1851 16 6 3.0220 -5.4702 -3.1591 17 7 2.8370 -5.1272 -1.8991 18 6 1.2569 -4.7637 0.5763 19 6 -0.1486 -4.8723 -0.0503 20 6 -1.0751 -5.1923 1.1500 21 6 -0.4719 -4.3311 2.2874 22 6 1.0516 -4.4203 2.0621 23 1 -0.4850 0.8400 0.0004 24 1 0.3584 -2.3897 0.0740 25 1 1.2949 -2.2066 -2.2628 26 1 1.6212 -2.7911 -4.6569 27 1 2.7463 -4.9370 -5.2149 28 1 3.5153 -6.4024 -3.3917 29 1 1.7821 -5.7142 0.4819 30 1 -0.4347 -3.9270 -0.5114 31 1 -0.1787 -5.6794 -0.7822 32 1 -1.0284 -6.2519 1.4014 33 1 -2.1016 -4.8913 0.9405 34 1 -0.7384 -4.7436 3.2605 35 1 -0.8097 -3.2980 2.2066 36 1 1.4765 -5.2044 2.6888 37 1 1.5204 -3.4635 2.2924 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309607293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:08 Heat of formation + Delta-G solvation = 19.884174 kcal Electronic energy + Delta-G solvation = -18291.005014 eV Core-core repulsion = 15646.187388 eV Total energy + Delta-G solvation = -2644.817626 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18480 -39.27413 -36.16383 -33.88638 -33.12144 -31.25768 -29.98950 -29.43505 -26.42681 -25.04990 -24.02669 -22.55690 -21.41537 -20.05880 -19.28153 -17.79968 -17.05245 -16.61250 -16.39566 -15.97422 -15.91408 -15.31936 -14.74880 -14.57802 -14.19745 -14.02300 -13.80965 -13.62366 -12.90310 -12.81752 -12.52266 -12.19902 -11.98117 -11.86780 -11.83986 -11.70397 -11.56517 -11.30810 -11.21438 -11.02652 -10.61519 -10.18230 -9.62613 -9.01594 -7.91972 -5.20645 0.40462 0.53441 1.47241 1.47815 1.53999 2.55631 3.05150 3.32871 3.60593 3.79458 3.85250 3.90193 4.11874 4.15646 4.25375 4.42022 4.53395 4.62451 4.63803 4.69132 4.80637 4.88096 4.91388 5.00682 5.01247 5.11573 5.16790 5.22967 5.31759 5.41169 5.47220 5.51484 5.60319 5.62330 5.69844 6.02917 6.29784 7.25602 7.37602 8.09362 8.38111 9.29771 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.010515 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.922812 B = 2662.109932 C = 3998.457692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.060 4.060 3 Si 0.960 3.040 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.065 0.935 9 N -0.712 5.712 10 C 0.224 3.776 11 H 0.051 0.949 12 C 0.107 3.893 13 C -0.165 4.165 14 C -0.093 4.093 15 C -0.179 4.179 16 C 0.080 3.920 17 N -0.503 5.503 18 C -0.076 4.076 19 C -0.112 4.112 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.112 4.112 23 H 0.250 0.750 24 H 0.381 0.619 25 H 0.119 0.881 26 H 0.142 0.858 27 H 0.164 0.836 28 H 0.183 0.817 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 -12.039 -3.693 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.253 4.253 3 Si 0.790 3.210 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.083 0.917 9 N -0.352 5.352 10 C 0.113 3.887 11 H 0.069 0.931 12 C -0.032 4.032 13 C -0.185 4.185 14 C -0.119 4.119 15 C -0.198 4.198 16 C -0.078 4.078 17 N -0.213 5.213 18 C -0.095 4.095 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.150 4.150 23 H 0.059 0.941 24 H 0.216 0.784 25 H 0.137 0.863 26 H 0.160 0.840 27 H 0.182 0.818 28 H 0.200 0.800 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.200 -12.435 -3.013 12.983 hybrid contribution -0.227 2.101 -0.780 2.253 sum 1.974 -10.334 -3.794 11.184 Atomic orbital electron populations 1.69787 1.06162 1.25902 1.59061 1.25329 0.96126 1.00171 1.03655 0.85420 0.77373 0.80289 0.77912 1.20935 1.22211 1.20810 1.19400 0.90928 0.85116 1.41303 0.91700 1.42499 1.06183 0.99996 1.86563 1.19152 0.94973 0.86509 0.88045 0.93108 1.22606 0.92360 0.89381 0.98860 1.22167 1.00980 1.01368 0.94012 1.21894 0.96659 0.97338 0.96043 1.22368 1.00296 0.94975 1.02173 1.23281 0.96709 1.00226 0.87542 1.67470 1.14397 1.17302 1.22161 1.21854 0.95725 0.97220 0.94726 1.22294 0.94921 1.00017 0.97803 1.22451 0.98195 1.00185 0.94292 1.22266 0.95094 0.99184 0.99010 1.22091 0.96720 1.01042 0.95126 0.94061 0.78400 0.86289 0.83977 0.81804 0.80042 0.89832 0.93779 0.92403 0.89873 0.91765 0.90334 0.94035 0.90654 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.59 13.06 21.65 0.28 -56.31 16 2 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 3 Si 0.96 45.71 29.55 68.60 2.03 47.73 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.24 -12.73 8.96 84.03 0.75 -11.98 16 8 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 9 N -0.71 -34.67 3.02 -326.53 -0.99 -35.66 16 10 C 0.22 9.35 2.32 44.24 0.10 9.46 16 11 H 0.05 2.26 8.06 -2.39 -0.02 2.24 16 12 C 0.11 4.28 5.53 42.55 0.24 4.52 16 13 C -0.17 -6.75 9.20 22.36 0.21 -6.54 16 14 C -0.09 -3.01 10.18 22.47 0.23 -2.78 16 15 C -0.18 -4.67 10.11 22.36 0.23 -4.44 16 16 C 0.08 2.23 11.18 84.67 0.95 3.18 16 17 N -0.50 -17.77 9.97 -183.88 -1.83 -19.61 16 18 C -0.08 -2.66 2.70 -10.07 -0.03 -2.69 16 19 C -0.11 -3.84 5.51 31.70 0.17 -3.67 16 20 C -0.11 -3.29 6.91 31.91 0.22 -3.07 16 21 C -0.12 -3.72 6.83 31.67 0.22 -3.50 16 22 C -0.11 -3.76 6.19 31.32 0.19 -3.56 16 23 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.38 19.82 6.04 -92.71 -0.56 19.26 16 25 H 0.12 5.79 6.33 -2.91 -0.02 5.77 16 26 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 27 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.18 3.57 8.06 -2.91 -0.02 3.54 16 29 H 0.08 2.77 7.99 -2.38 -0.02 2.75 16 30 H 0.04 1.79 6.18 -2.39 -0.01 1.77 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.05 1.91 7.36 -2.38 -0.02 1.89 16 Total: -1.00 -61.56 299.16 3.92 -57.64 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.49 Total: 34.13 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 3.94 Total: -27.92 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -2.54 Total: -111.58 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -61.56 3.92 -57.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309607293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.524 kcal (2) G-P(sol) polarization free energy of solvation -61.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds