Wall clock time and date at job start Mon Mar 30 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 112.85221 * 2 1 4 4 N 1.46512 * 109.46812 * 48.80603 * 3 2 1 5 5 C 1.39243 * 119.99570 * 180.02562 * 4 3 2 6 6 C 1.39709 * 120.78585 * 359.97438 * 5 4 3 7 7 C 1.38453 * 119.47361 * 180.02562 * 6 5 4 8 8 N 1.31537 * 121.10386 * 0.02562 * 7 6 5 9 9 C 1.33696 * 121.70319 * 0.02562 * 8 7 6 10 10 C 1.41448 * 119.79811 * 179.97438 * 9 8 7 11 11 H 1.08007 * 120.00333 * 187.07392 * 10 9 8 12 12 C 1.40007 * 120.00341 * 7.07543 * 10 9 8 13 13 N 1.30742 * 120.00611 * 182.54825 * 12 10 9 14 14 Si 1.86805 * 119.99728 * 2.54021 * 12 10 9 15 15 H 1.48500 * 109.46971 * 180.02562 * 14 12 10 16 16 H 1.48504 * 109.47204 * 300.00376 * 14 12 10 17 17 H 1.48504 * 109.46850 * 60.00368 * 14 12 10 18 18 C 1.39025 * 120.77999 * 180.29651 * 5 4 3 19 19 C 1.53780 * 113.69002 * 131.26859 * 2 1 3 20 20 C 1.53782 * 87.08207 * 89.12693 * 19 2 1 21 21 C 1.53776 * 87.08061 * 25.43166 * 20 19 2 22 22 H 1.08993 * 109.47420 * 69.66570 * 1 2 3 23 23 H 1.09004 * 109.47707 * 189.66837 * 1 2 3 24 24 H 1.09003 * 109.47194 * 309.66410 * 1 2 3 25 25 H 1.08989 * 109.47369 * 288.80725 * 3 2 1 26 26 H 1.08996 * 109.47320 * 168.80069 * 3 2 1 27 27 H 0.96994 * 119.99652 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.26358 * 0.04838 * 6 5 4 29 29 H 1.07994 * 119.45102 * 179.97438 * 7 6 5 30 30 H 0.97010 * 119.99796 * 354.84253 * 13 12 10 31 31 H 1.08003 * 120.56317 * 359.97438 * 18 5 4 32 32 H 1.09004 * 113.61812 * 203.67237 * 19 2 1 33 33 H 1.09000 * 113.61704 * 334.57680 * 19 2 1 34 34 H 1.09003 * 113.61283 * 270.88169 * 20 19 2 35 35 H 1.08997 * 113.69147 * 139.99077 * 20 19 2 36 36 H 1.09000 * 113.61906 * 220.01858 * 21 20 19 37 37 H 1.09005 * 113.61460 * 89.11627 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.4754 2.2132 1.0394 5 6 1.8523 3.5399 1.2305 6 6 2.8473 4.1215 0.4409 7 6 3.2012 5.4428 0.6546 8 7 2.6164 6.1602 1.5894 9 6 1.6599 5.6496 2.3715 10 6 1.0585 6.4574 3.3648 11 1 0.3695 6.0201 4.0723 12 6 1.3562 7.8239 3.4308 13 7 0.8393 8.5606 4.3791 14 14 2.4923 8.5945 2.1639 15 1 2.6460 10.0429 2.4529 16 1 3.8212 7.9343 2.2241 17 1 1.9132 8.4186 0.8078 18 6 1.2519 4.3152 2.2161 19 6 2.1478 -0.9288 1.0584 20 6 2.0949 -2.0420 -0.0013 21 6 2.1459 -0.9281 -1.0602 22 1 -0.3634 0.3571 -0.9635 23 1 -0.3635 -1.0131 0.1726 24 1 -0.3634 0.6560 0.7911 25 1 1.9600 1.8734 -0.9727 26 1 3.1942 1.3532 0.1996 27 1 0.7829 1.8209 1.5939 28 1 3.3364 3.5450 -0.3304 29 1 3.9707 5.8919 0.0443 30 1 0.1915 8.1782 4.9918 31 1 0.4822 3.8991 2.8492 32 1 3.1609 -0.6488 1.3473 33 1 1.4973 -1.1094 1.9142 34 1 1.1594 -2.6014 -0.0006 35 1 2.9737 -2.6869 -0.0033 36 1 1.4939 -1.1079 -1.9150 37 1 3.1585 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309775074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:03 Heat of formation + Delta-G solvation = 27.277780 kcal Electronic energy + Delta-G solvation = -17362.478763 eV Core-core repulsion = 14717.981748 eV Total energy + Delta-G solvation = -2644.497015 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89736 -38.50920 -35.32226 -33.48513 -30.64233 -30.25453 -28.53130 -26.56362 -25.79982 -25.16674 -22.34989 -21.94823 -20.28097 -18.47972 -18.22541 -16.50167 -15.91640 -15.29820 -14.72528 -14.54644 -14.27883 -13.99337 -13.59536 -13.42028 -12.71226 -12.63595 -12.40850 -12.25636 -12.15870 -11.99369 -11.87351 -11.37090 -10.73741 -10.65769 -10.51882 -10.27308 -10.21225 -10.07346 -9.65418 -9.47969 -9.18223 -7.87641 -7.56663 -7.12363 -6.92839 -4.70253 2.68608 2.91529 3.71498 3.80386 3.90977 4.13754 4.39943 4.43743 4.56487 4.58170 4.65584 4.76741 5.01965 5.30316 5.41014 5.53384 5.61848 5.65438 5.66496 5.70221 5.74594 5.81209 5.89618 5.90517 5.99375 6.19415 6.24546 6.32862 6.44145 6.68869 6.90161 7.24041 7.35905 7.41060 7.55212 8.10721 8.18005 8.31250 8.53463 8.78027 9.65793 10.11283 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.049335 B = 0.004763 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.410720 B = 5877.297577 C = 6221.158482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C 0.149 3.851 4 N -0.749 5.749 5 C 0.269 3.731 6 C -0.366 4.366 7 C 0.176 3.824 8 N -0.595 5.595 9 C 0.278 3.722 10 C -0.479 4.479 11 H 0.077 0.923 12 C 0.044 3.956 13 N -0.811 5.811 14 Si 1.159 2.841 15 H -0.337 1.337 16 H -0.280 1.280 17 H -0.295 1.295 18 C -0.338 4.338 19 C -0.131 4.131 20 C -0.141 4.141 21 C -0.128 4.128 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.391 0.609 28 H 0.101 0.899 29 H 0.126 0.874 30 H 0.281 0.719 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 -17.004 -8.593 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.097 4.097 3 C 0.024 3.976 4 N -0.382 5.382 5 C 0.162 3.838 6 C -0.394 4.394 7 C 0.014 3.986 8 N -0.317 5.317 9 C 0.155 3.845 10 C -0.510 4.510 11 H 0.096 0.904 12 C -0.176 4.176 13 N -0.433 5.433 14 Si 0.994 3.006 15 H -0.271 1.271 16 H -0.207 1.207 17 H -0.223 1.223 18 C -0.365 4.365 19 C -0.168 4.168 20 C -0.179 4.179 21 C -0.166 4.166 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.226 0.774 28 H 0.119 0.881 29 H 0.143 0.857 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.298 -14.844 -8.859 17.439 hybrid contribution -1.459 -2.711 0.663 3.150 sum 0.839 -17.555 -8.195 19.392 Atomic orbital electron populations 1.21554 0.92937 1.01588 1.02379 1.22073 0.96022 0.93873 0.97734 1.21100 0.96064 0.88866 0.91557 1.44466 1.44286 1.09618 1.39815 1.17735 0.91173 0.82851 0.92003 1.20702 1.09934 0.98301 1.10441 1.21875 0.94552 0.90257 0.91904 1.66476 1.15648 1.37391 1.12145 1.18360 0.86958 0.89647 0.89500 1.20725 1.23155 0.95072 1.12076 0.90442 1.27833 0.97307 0.94441 0.98033 1.70668 1.20470 1.40659 1.11498 0.81741 0.76627 0.69476 0.72716 1.27078 1.20737 1.22302 1.20974 1.11276 0.96907 1.07308 1.23017 1.01318 0.95869 0.96610 1.22806 1.01826 0.96364 0.96879 1.22943 1.01216 0.95873 0.96533 0.92154 0.92464 0.92066 0.92896 0.92790 0.77377 0.88131 0.85673 0.90835 0.88355 0.89934 0.91556 0.90350 0.91594 0.91368 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.90 37.16 0.33 -0.95 16 2 C -0.10 -1.01 1.09 -153.70 -0.17 -1.18 16 3 C 0.15 2.01 4.42 -4.04 -0.02 1.99 16 4 N -0.75 -12.41 5.45 -58.50 -0.32 -12.73 16 5 C 0.27 5.72 6.69 -83.65 -0.56 5.16 16 6 C -0.37 -7.70 9.40 -38.95 -0.37 -8.07 16 7 C 0.18 4.01 11.17 -17.60 -0.20 3.81 16 8 N -0.60 -15.66 4.55 -11.21 -0.05 -15.71 16 9 C 0.28 7.54 6.39 -85.02 -0.54 7.00 16 10 C -0.48 -13.63 9.58 -37.70 -0.36 -13.99 16 11 H 0.08 2.20 8.05 -52.48 -0.42 1.78 16 12 C 0.04 1.25 5.52 -17.35 -0.10 1.15 16 13 N -0.81 -22.92 13.65 55.55 0.76 -22.17 16 14 Si 1.16 29.57 25.56 -169.99 -4.34 25.23 16 15 H -0.34 -8.46 7.11 56.52 0.40 -8.06 16 16 H -0.28 -7.09 6.67 56.52 0.38 -6.71 16 17 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 18 C -0.34 -8.22 9.72 -38.47 -0.37 -8.59 16 19 C -0.13 -1.29 7.21 -25.92 -0.19 -1.48 16 20 C -0.14 -1.17 7.73 -25.92 -0.20 -1.37 16 21 C -0.13 -1.13 7.23 -25.92 -0.19 -1.31 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.50 7.34 -51.93 -0.38 0.11 16 24 H 0.06 0.67 6.28 -51.93 -0.33 0.34 16 25 H 0.05 0.74 7.99 -51.94 -0.41 0.33 16 26 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 27 H 0.39 6.01 6.77 -40.82 -0.28 5.73 16 28 H 0.10 1.84 6.87 -52.49 -0.36 1.48 16 29 H 0.13 2.42 8.06 -52.49 -0.42 1.99 16 30 H 0.28 7.59 8.72 -40.82 -0.36 7.23 16 31 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 32 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 33 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.08 0.60 7.64 -51.93 -0.40 0.20 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 297.25 15.07 4.48 4.48 Total: -1.00 -29.90 297.25 -7.93 -37.82 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.53 Total: 0.89 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.93 Total: -17.81 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.39 Total: -50.61 kcal Atomic # 14 Polarization: 29.57 SS G_CDS: -4.34 Total: 25.23 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.90 -7.93 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309775074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.102 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds