Wall clock time and date at job start Mon Mar 30 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 112.85221 * 2 1 4 4 N 1.46512 * 109.46812 * 48.80603 * 3 2 1 5 5 C 1.39243 * 119.99570 * 180.02562 * 4 3 2 6 6 C 1.39709 * 120.78585 * 359.97438 * 5 4 3 7 7 C 1.38453 * 119.47361 * 180.02562 * 6 5 4 8 8 N 1.31537 * 121.10386 * 0.02562 * 7 6 5 9 9 C 1.33696 * 121.70319 * 0.02562 * 8 7 6 10 10 C 1.41448 * 119.79811 * 179.97438 * 9 8 7 11 11 H 1.08007 * 120.00333 * 187.07392 * 10 9 8 12 12 C 1.40007 * 120.00341 * 7.07543 * 10 9 8 13 13 N 1.30742 * 120.00611 * 182.54825 * 12 10 9 14 14 Si 1.86805 * 119.99728 * 2.54021 * 12 10 9 15 15 H 1.48500 * 109.46971 * 180.02562 * 14 12 10 16 16 H 1.48504 * 109.47204 * 300.00376 * 14 12 10 17 17 H 1.48504 * 109.46850 * 60.00368 * 14 12 10 18 18 C 1.39025 * 120.77999 * 180.29651 * 5 4 3 19 19 C 1.53780 * 113.69002 * 131.26859 * 2 1 3 20 20 C 1.53782 * 87.08207 * 89.12693 * 19 2 1 21 21 C 1.53776 * 87.08061 * 25.43166 * 20 19 2 22 22 H 1.08993 * 109.47420 * 69.66570 * 1 2 3 23 23 H 1.09004 * 109.47707 * 189.66837 * 1 2 3 24 24 H 1.09003 * 109.47194 * 309.66410 * 1 2 3 25 25 H 1.08989 * 109.47369 * 288.80725 * 3 2 1 26 26 H 1.08996 * 109.47320 * 168.80069 * 3 2 1 27 27 H 0.96994 * 119.99652 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.26358 * 0.04838 * 6 5 4 29 29 H 1.07994 * 119.45102 * 179.97438 * 7 6 5 30 30 H 0.97010 * 119.99796 * 354.84253 * 13 12 10 31 31 H 1.08003 * 120.56317 * 359.97438 * 18 5 4 32 32 H 1.09004 * 113.61812 * 203.67237 * 19 2 1 33 33 H 1.09000 * 113.61704 * 334.57680 * 19 2 1 34 34 H 1.09003 * 113.61283 * 270.88169 * 20 19 2 35 35 H 1.08997 * 113.69147 * 139.99077 * 20 19 2 36 36 H 1.09000 * 113.61906 * 220.01858 * 21 20 19 37 37 H 1.09005 * 113.61460 * 89.11627 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.4754 2.2132 1.0394 5 6 1.8523 3.5399 1.2305 6 6 2.8473 4.1215 0.4409 7 6 3.2012 5.4428 0.6546 8 7 2.6164 6.1602 1.5894 9 6 1.6599 5.6496 2.3715 10 6 1.0585 6.4574 3.3648 11 1 0.3695 6.0201 4.0723 12 6 1.3562 7.8239 3.4308 13 7 0.8393 8.5606 4.3791 14 14 2.4923 8.5945 2.1639 15 1 2.6460 10.0429 2.4529 16 1 3.8212 7.9343 2.2241 17 1 1.9132 8.4186 0.8078 18 6 1.2519 4.3152 2.2161 19 6 2.1478 -0.9288 1.0584 20 6 2.0949 -2.0420 -0.0013 21 6 2.1459 -0.9281 -1.0602 22 1 -0.3634 0.3571 -0.9635 23 1 -0.3635 -1.0131 0.1726 24 1 -0.3634 0.6560 0.7911 25 1 1.9600 1.8734 -0.9727 26 1 3.1942 1.3532 0.1996 27 1 0.7829 1.8209 1.5939 28 1 3.3364 3.5450 -0.3304 29 1 3.9707 5.8919 0.0443 30 1 0.1915 8.1782 4.9918 31 1 0.4822 3.8991 2.8492 32 1 3.1609 -0.6488 1.3473 33 1 1.4973 -1.1094 1.9142 34 1 1.1594 -2.6014 -0.0006 35 1 2.9737 -2.6869 -0.0033 36 1 1.4939 -1.1079 -1.9150 37 1 3.1585 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309775074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:02 Heat of formation + Delta-G solvation = 10.027908 kcal Electronic energy + Delta-G solvation = -17363.226774 eV Core-core repulsion = 14717.981748 eV Total energy + Delta-G solvation = -2645.245026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89879 -40.17286 -36.86058 -35.46780 -32.20254 -31.94897 -29.67637 -27.95663 -26.91957 -26.50812 -23.75090 -23.38228 -21.98723 -20.29771 -19.19938 -17.97576 -17.49183 -16.37131 -16.26726 -15.95693 -15.82566 -15.30440 -15.07097 -14.59702 -14.37771 -14.23673 -14.01775 -13.96455 -13.19360 -13.07003 -12.90982 -12.53251 -12.34034 -12.08126 -11.95180 -11.55867 -11.45248 -11.38698 -11.23923 -11.08409 -10.91947 -9.82582 -9.57425 -9.17473 -8.52306 -6.80192 0.78019 1.06557 1.65939 1.80286 2.12402 2.54290 2.59079 2.74451 3.58111 3.63972 3.69178 3.77279 3.96470 4.05805 4.14318 4.45943 4.54404 4.62149 4.66346 4.69538 4.80786 4.87264 4.88936 4.91649 4.97920 5.06647 5.09679 5.17338 5.21145 5.40488 5.43959 5.49772 5.51269 5.58582 5.63634 6.06917 6.28865 6.64082 6.74424 6.91271 7.73175 8.01166 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.049335 B = 0.004763 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.410720 B = 5877.297577 C = 6221.158482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C 0.144 3.856 4 N -0.735 5.735 5 C 0.277 3.723 6 C -0.347 4.347 7 C 0.160 3.840 8 N -0.621 5.621 9 C 0.264 3.736 10 C -0.519 4.519 11 H 0.056 0.944 12 C 0.016 3.984 13 N -0.838 5.838 14 Si 1.195 2.805 15 H -0.335 1.335 16 H -0.277 1.277 17 H -0.296 1.296 18 C -0.358 4.358 19 C -0.136 4.136 20 C -0.133 4.133 21 C -0.122 4.122 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.398 0.602 28 H 0.137 0.863 29 H 0.163 0.837 30 H 0.277 0.723 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 -19.589 -11.120 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 C 0.020 3.980 4 N -0.366 5.366 5 C 0.167 3.833 6 C -0.375 4.375 7 C 0.001 3.999 8 N -0.343 5.343 9 C 0.141 3.859 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.199 4.199 13 N -0.462 5.462 14 Si 1.028 2.972 15 H -0.269 1.269 16 H -0.205 1.205 17 H -0.225 1.225 18 C -0.385 4.385 19 C -0.173 4.173 20 C -0.170 4.170 21 C -0.160 4.160 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.234 0.766 28 H 0.155 0.845 29 H 0.180 0.820 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.515 -17.492 -11.405 21.175 hybrid contribution -1.792 -2.230 1.278 3.133 sum 1.723 -19.721 -10.127 22.236 Atomic orbital electron populations 1.21558 0.92657 1.02315 1.01919 1.22094 0.96210 0.92185 0.99221 1.21355 0.96191 0.90079 0.90328 1.44625 1.43851 1.08066 1.40074 1.17830 0.90376 0.84478 0.90627 1.21129 1.08510 0.97910 1.09917 1.22567 0.94907 0.91074 0.91386 1.66409 1.16061 1.38569 1.13261 1.18468 0.87296 0.90629 0.89508 1.20700 1.24951 0.95838 1.13641 0.92531 1.28601 0.97862 0.94777 0.98707 1.70690 1.22009 1.40820 1.12657 0.81253 0.75664 0.68975 0.71272 1.26884 1.20478 1.22466 1.21038 1.12089 0.96652 1.08736 1.23044 1.00806 0.96622 0.96856 1.22782 1.02770 0.95991 0.95455 1.22947 1.01463 0.95098 0.96486 0.92077 0.90882 0.93379 0.92632 0.92464 0.76621 0.84498 0.81988 0.91244 0.88538 0.90568 0.91835 0.89463 0.90672 0.90439 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.90 71.98 0.64 -1.55 16 2 C -0.10 -1.70 1.09 -51.66 -0.06 -1.76 16 3 C 0.14 3.37 4.42 86.38 0.38 3.75 16 4 N -0.74 -22.42 5.45 -339.00 -1.85 -24.26 16 5 C 0.28 11.16 6.69 38.51 0.26 11.42 16 6 C -0.35 -13.34 9.40 22.68 0.21 -13.12 16 7 C 0.16 6.81 11.17 84.79 0.95 7.76 16 8 N -0.62 -32.07 4.55 -189.38 -0.86 -32.93 16 9 C 0.26 14.54 6.39 40.18 0.26 14.79 16 10 C -0.52 -30.80 9.58 23.49 0.23 -30.58 16 11 H 0.06 3.44 8.05 -2.91 -0.02 3.42 16 12 C 0.02 0.91 5.52 85.28 0.47 1.38 16 13 N -0.84 -49.25 13.65 21.83 0.30 -48.96 16 14 Si 1.20 60.75 25.56 68.60 1.75 62.50 16 15 H -0.33 -16.60 7.11 99.48 0.71 -15.89 16 16 H -0.28 -13.78 6.67 99.48 0.66 -13.11 16 17 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 18 C -0.36 -17.39 9.72 22.99 0.22 -17.17 16 19 C -0.14 -2.28 7.21 31.12 0.22 -2.06 16 20 C -0.13 -1.71 7.73 31.12 0.24 -1.46 16 21 C -0.12 -1.68 7.23 31.12 0.23 -1.45 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.07 1.03 7.34 -2.38 -0.02 1.02 16 24 H 0.05 0.95 6.28 -2.39 -0.01 0.93 16 25 H 0.06 1.32 7.99 -2.39 -0.02 1.30 16 26 H 0.06 1.35 7.79 -2.39 -0.02 1.33 16 27 H 0.40 11.41 6.77 -92.71 -0.63 10.78 16 28 H 0.14 4.28 6.87 -2.91 -0.02 4.26 16 29 H 0.16 5.58 8.06 -2.91 -0.02 5.56 16 30 H 0.28 15.81 8.72 -92.70 -0.81 15.00 16 31 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.08 1.38 7.96 -2.38 -0.02 1.37 16 33 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.09 0.99 7.64 -2.39 -0.02 0.97 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.96 8.10 -2.39 -0.02 0.94 16 37 H 0.09 1.15 8.10 -2.38 -0.02 1.13 16 Total: -1.00 -65.32 297.25 3.94 -61.38 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.35 Total: 12.32 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 4.25 Total: -30.05 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -2.41 Total: -106.15 kcal Atomic # 14 Polarization: 60.75 SS G_CDS: 1.75 Total: 62.50 kcal Total: -65.32 3.94 -61.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309775074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.408 kcal (2) G-P(sol) polarization free energy of solvation -65.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds