Wall clock time and date at job start Mon Mar 30 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86804 * 119.99859 * 2 1 4 4 H 1.48500 * 109.47266 * 270.00006 * 3 2 1 5 5 H 1.48495 * 109.47184 * 29.99916 * 3 2 1 6 6 H 1.48494 * 109.47128 * 150.00037 * 3 2 1 7 7 C 1.39931 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00101 * 197.88340 * 7 2 1 9 9 C 1.41403 * 119.99705 * 17.87724 * 7 2 1 10 10 C 1.40791 * 120.20260 * 204.46551 * 9 7 2 11 11 C 1.37648 * 119.88742 * 179.97438 * 10 9 7 12 12 C 1.38518 * 120.33159 * 359.97438 * 11 10 9 13 13 C 1.39305 * 120.42093 * 359.78815 * 12 11 10 14 14 N 1.39682 * 119.95024 * 180.25824 * 13 12 11 15 15 C 1.46492 * 120.00255 * 0.20977 * 14 13 12 16 16 H 1.09000 * 110.67664 * 31.75846 * 15 14 13 17 17 C 1.54893 * 110.75553 * 268.32771 * 15 14 13 18 18 C 1.54270 * 104.19616 * 203.74168 * 17 15 14 19 19 C 1.53874 * 106.59753 * 23.61194 * 18 17 15 20 20 H 1.09003 * 110.02763 * 240.71474 * 19 18 17 21 21 N 1.46901 * 110.07338 * 119.30678 * 19 18 17 22 22 C 1.54267 * 106.59850 * 359.97438 * 19 18 17 23 23 C 1.38317 * 120.09314 * 0.46559 * 13 12 11 24 24 H 0.97002 * 120.00039 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.05446 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.83716 * 179.97438 * 11 10 9 27 27 H 1.07997 * 119.79294 * 180.02562 * 12 11 10 28 28 H 0.97003 * 119.99640 * 180.20763 * 14 13 12 29 29 H 1.08995 * 110.48575 * 322.42056 * 17 15 14 30 30 H 1.09000 * 110.48917 * 85.06443 * 17 15 14 31 31 H 1.08996 * 110.03364 * 264.32377 * 18 17 15 32 32 H 1.09003 * 110.02795 * 142.89389 * 18 17 15 33 33 H 1.00900 * 111.00102 * 62.80707 * 21 19 18 34 34 H 1.00900 * 110.99510 * 186.75817 * 21 19 18 35 35 H 1.08997 * 110.48394 * 217.71427 * 22 19 18 36 36 H 1.08991 * 110.48695 * 95.07161 * 22 19 18 37 37 H 1.08001 * 120.15813 * 179.79323 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0489 -1.2345 0.2867 9 6 1.3522 -2.4066 -0.3770 10 6 1.8257 -3.6499 0.0837 11 6 1.1820 -4.8090 -0.2864 12 6 0.0695 -4.7588 -1.1100 13 6 -0.4134 -3.5356 -1.5696 14 7 -1.5393 -3.4961 -2.3953 15 6 -2.2142 -4.7400 -2.7737 16 1 -2.1307 -5.4805 -1.9782 17 6 -1.6437 -5.2913 -4.1041 18 6 -2.7804 -6.1684 -4.6686 19 6 -4.0876 -5.6490 -4.0447 20 1 -4.5633 -6.4387 -3.4631 21 7 -4.9985 -5.1821 -5.0984 22 6 -3.6996 -4.4748 -3.1224 23 6 0.2230 -2.3605 -1.2128 24 1 -0.4850 0.8401 -0.0004 25 1 2.6920 -3.6940 0.7270 26 1 1.5462 -5.7622 0.0672 27 1 -0.4291 -5.6736 -1.3946 28 1 -1.8743 -2.6449 -2.7182 29 1 -1.4161 -4.4745 -4.7890 30 1 -0.7543 -5.8931 -3.9176 31 1 -2.6217 -7.2101 -4.3898 32 1 -2.8212 -6.0738 -5.7537 33 1 -5.2618 -5.9398 -5.7105 34 1 -5.8130 -4.7381 -4.7015 35 1 -4.3106 -4.4807 -2.2198 36 1 -3.8037 -3.5260 -3.6485 37 1 -0.1484 -1.4119 -1.5713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313405742.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:52 Heat of formation + Delta-G solvation = 8.042481 kcal Electronic energy + Delta-G solvation = -17383.312389 eV Core-core repulsion = 14737.981268 eV Total energy + Delta-G solvation = -2645.331120 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.81343 -37.28919 -34.51945 -33.23099 -31.65247 -29.39678 -28.77662 -27.18999 -25.32534 -24.95838 -21.33322 -20.50469 -19.76845 -19.48664 -17.23557 -16.27321 -15.79415 -15.36077 -15.16270 -14.73143 -14.43776 -13.88267 -13.31049 -12.98680 -12.73741 -12.17698 -12.02184 -11.70968 -11.53278 -11.29864 -11.11528 -11.03213 -10.96949 -10.88293 -10.53709 -10.37344 -10.23555 -9.57276 -9.38201 -9.18442 -8.82823 -8.69395 -7.26278 -6.68733 -6.09818 -4.26792 2.90699 3.12847 3.16520 3.27902 3.38383 4.01302 4.21708 4.44307 4.67949 4.79802 4.91819 5.08467 5.53047 5.54032 5.60801 5.73607 5.84355 5.93063 5.96161 6.11468 6.18513 6.33110 6.39959 6.49282 6.67695 6.94170 7.06430 7.16818 7.18954 7.28050 7.43973 7.50071 7.87542 8.01413 8.16750 8.22807 8.54623 8.78183 8.89700 9.06195 9.17521 10.30084 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031155 B = 0.005194 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.521728 B = 5389.098862 C = 6029.176951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.258 4.258 11 C -0.066 4.066 12 C -0.300 4.300 13 C 0.217 3.783 14 N -0.751 5.751 15 C 0.160 3.840 16 H 0.081 0.919 17 C -0.135 4.135 18 C -0.117 4.117 19 C 0.087 3.913 20 H 0.036 0.964 21 N -0.844 5.844 22 C -0.127 4.127 23 C -0.232 4.232 24 H 0.277 0.723 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.389 0.611 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.338 0.662 34 H 0.339 0.661 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -7.115 -7.083 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.279 4.279 11 C -0.085 4.085 12 C -0.323 4.323 13 C 0.119 3.881 14 N -0.382 5.382 15 C 0.053 3.947 16 H 0.099 0.901 17 C -0.175 4.175 18 C -0.156 4.156 19 C -0.024 4.024 20 H 0.054 0.946 21 N -0.374 5.374 22 C -0.166 4.166 23 C -0.256 4.256 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.223 0.777 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.656 -6.674 -7.271 12.492 hybrid contribution -0.545 0.381 0.348 0.751 sum -8.202 -6.294 -6.923 12.442 Atomic orbital electron populations 1.69872 1.07499 1.28723 1.35789 1.25868 0.94656 1.01046 0.92321 0.86389 0.80566 0.80958 0.79203 1.19401 1.20481 1.18700 1.19561 0.98097 0.91356 1.40567 0.90608 1.17319 0.90107 0.91816 0.87168 1.20854 1.04878 0.92952 1.09184 1.20280 0.95185 0.96208 0.96860 1.19907 1.04420 0.94425 1.13546 1.17659 0.86290 0.94272 0.89902 1.44410 1.31368 1.06096 1.56375 1.21542 0.89737 0.88219 0.95230 0.90081 1.22820 0.97465 0.99294 0.97898 1.22164 0.93945 0.98740 1.00738 1.21917 0.93523 0.95517 0.91453 0.94595 1.58882 1.21349 1.35017 1.22169 1.22675 0.96708 0.98843 0.98381 1.20734 1.02570 0.95100 1.07215 0.91234 0.89460 0.89726 0.89584 0.77711 0.91346 0.91579 0.92153 0.91123 0.85021 0.84866 0.91722 0.90258 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.99 10.96 55.55 0.61 -20.38 16 2 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 3 Si 0.90 19.17 29.60 -169.99 -5.03 14.14 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.47 -12.78 9.05 -37.74 -0.34 -13.12 16 8 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.14 3.84 5.57 -106.85 -0.60 3.24 16 10 C -0.26 -6.63 9.79 -38.83 -0.38 -7.01 16 11 C -0.07 -1.56 10.01 -39.69 -0.40 -1.96 16 12 C -0.30 -6.91 9.23 -39.08 -0.36 -7.27 16 13 C 0.22 5.13 6.64 -83.86 -0.56 4.57 16 14 N -0.75 -14.54 5.35 -50.31 -0.27 -14.81 16 15 C 0.16 2.53 2.98 -65.95 -0.20 2.34 16 16 H 0.08 1.35 6.37 -51.93 -0.33 1.02 16 17 C -0.14 -1.96 6.51 -25.07 -0.16 -2.12 16 18 C -0.12 -1.37 6.59 -25.61 -0.17 -1.53 16 19 C 0.09 0.97 4.03 -66.59 -0.27 0.70 16 20 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 21 N -0.84 -8.14 9.11 -3.72 -0.03 -8.18 16 22 C -0.13 -1.67 6.11 -25.09 -0.15 -1.82 16 23 C -0.23 -6.17 8.53 -38.68 -0.33 -6.50 16 24 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 25 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 26 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.09 1.78 6.17 -52.49 -0.32 1.46 16 28 H 0.39 7.30 8.57 -40.82 -0.35 6.95 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 33 H 0.34 2.65 9.07 -39.29 -0.36 2.29 16 34 H 0.34 2.84 9.01 -39.29 -0.35 2.49 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.09 7.93 -51.93 -0.41 0.67 16 37 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 LS Contribution 300.74 15.07 4.53 4.53 Total: -1.00 -28.53 300.74 -9.56 -38.10 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -5.37 Total: 15.14 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -4.00 Total: -28.55 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.31 Total: -43.36 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.53 -9.56 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313405742.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.141 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds