Wall clock time and date at job start Mon Mar 30 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99713 * 2 1 4 4 H 1.48503 * 109.47091 * 274.97578 * 3 2 1 5 5 H 1.48501 * 109.47129 * 34.98033 * 3 2 1 6 6 H 1.48503 * 109.47022 * 154.97900 * 3 2 1 7 7 C 1.37873 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00091 * 188.91698 * 7 2 1 9 9 C 1.50700 * 120.00318 * 8.91591 * 7 2 1 10 10 H 1.09002 * 110.01179 * 306.69893 * 9 7 2 11 11 C 1.54270 * 110.06884 * 68.11004 * 9 7 2 12 12 C 1.55032 * 104.27704 * 142.83222 * 11 9 7 13 13 C 1.54891 * 102.68074 * 322.22735 * 12 11 9 14 14 H 1.08996 * 110.49300 * 279.03349 * 13 12 11 15 15 N 1.46899 * 110.48575 * 156.51721 * 13 12 11 16 16 C 1.46905 * 110.99779 * 88.24422 * 15 13 12 17 17 C 1.50706 * 109.47278 * 180.02562 * 16 15 13 18 18 C 1.38226 * 119.61659 * 94.97815 * 17 16 15 19 19 C 1.38634 * 119.15755 * 180.02562 * 18 17 16 20 20 C 1.38670 * 118.41881 * 359.97438 * 19 18 17 21 21 C 1.38178 * 119.16896 * 359.97438 * 20 19 18 22 22 N 1.31858 * 119.61380 * 274.99983 * 17 16 15 23 23 C 1.53872 * 110.03720 * 185.30353 * 9 7 2 24 24 H 0.97001 * 120.00252 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.48701 * 261.59274 * 11 9 7 26 26 H 1.08990 * 110.48987 * 24.10935 * 11 9 7 27 27 H 1.09004 * 110.87509 * 203.89998 * 12 11 9 28 28 H 1.08995 * 110.70527 * 80.48230 * 12 11 9 29 29 H 1.00896 * 111.00629 * 212.20155 * 15 13 12 30 30 H 1.08998 * 109.46927 * 60.00229 * 16 15 13 31 31 H 1.09002 * 109.46910 * 300.00133 * 16 15 13 32 32 H 1.07997 * 120.42489 * 0.02562 * 18 17 16 33 33 H 1.08001 * 120.78743 * 179.97438 * 19 18 17 34 34 H 1.08003 * 120.41324 * 180.27893 * 20 19 18 35 35 H 1.07997 * 119.62069 * 180.02562 * 21 20 19 36 36 H 1.08997 * 110.03487 * 121.38185 * 23 9 7 37 37 H 1.09003 * 110.07203 * 359.96950 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5030 2.6200 0.8027 6 1 3.5953 1.4122 0.5922 7 6 2.0045 -1.1940 -0.0005 8 1 3.0748 -1.1997 0.1445 9 6 1.2648 -2.4912 -0.2034 10 1 0.4446 -2.5684 0.5104 11 6 0.7204 -2.5704 -1.6446 12 6 0.8846 -4.0620 -2.0340 13 6 2.2340 -4.4391 -1.3737 14 1 3.0676 -4.1099 -1.9941 15 7 2.3067 -5.8882 -1.1439 16 6 2.8540 -6.5806 -2.3182 17 6 2.9127 -8.0617 -2.0460 18 6 1.8734 -8.8740 -2.4594 19 6 1.9370 -10.2350 -2.2035 20 6 3.0488 -10.7304 -1.5391 21 6 4.0495 -9.8574 -1.1571 22 7 3.9547 -8.5677 -1.4160 23 6 2.2272 -3.6794 -0.0311 24 1 -0.4850 0.8400 0.0004 25 1 -0.3304 -2.2819 -1.6719 26 1 1.3065 -1.9359 -2.3093 27 1 0.9388 -4.1771 -3.1166 28 1 0.0721 -4.6597 -1.6211 29 1 2.8462 -6.0967 -0.3172 30 1 3.8577 -6.2087 -2.5242 31 1 2.2136 -6.3952 -3.1806 32 1 1.0227 -8.4537 -2.9751 33 1 1.1396 -10.8938 -2.5144 34 1 3.1337 -11.7860 -1.3271 35 1 4.9188 -10.2354 -0.6396 36 1 1.8741 -4.3333 0.7662 37 1 3.2297 -3.3185 0.1987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378716967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:00 Heat of formation + Delta-G solvation = 1.289847 kcal Electronic energy + Delta-G solvation = -17053.231797 eV Core-core repulsion = 14407.607861 eV Total energy + Delta-G solvation = -2645.623937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07162 -39.32255 -36.11142 -34.23176 -33.27861 -32.12497 -29.88465 -28.69538 -26.31910 -25.20405 -24.34676 -22.64953 -21.05320 -20.77394 -18.55513 -17.76899 -17.18577 -16.70832 -16.52956 -16.40711 -15.75963 -15.50851 -14.88780 -14.50863 -14.18162 -14.06612 -13.82672 -13.54115 -13.22232 -13.08810 -12.62388 -12.54524 -12.32061 -11.90904 -11.76792 -11.55058 -11.44045 -11.08093 -10.78753 -10.76505 -10.44286 -10.34996 -9.93304 -9.36112 -8.12550 -6.19514 0.20396 0.42232 1.40249 1.41365 1.51665 2.43887 2.79909 3.17791 3.29214 3.55367 3.81606 4.00604 4.05795 4.09519 4.25518 4.30022 4.40827 4.54584 4.60258 4.75555 4.82926 4.86278 4.91329 4.96331 5.06555 5.20131 5.24648 5.30904 5.33019 5.42251 5.50168 5.66322 5.84448 5.91499 5.97191 6.13958 6.38368 6.44091 6.92262 7.10262 7.46434 8.97575 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.056550 B = 0.003893 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.017303 B = 7190.857280 C = 7431.371921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.038 3.962 10 H -0.003 1.003 11 C -0.093 4.093 12 C -0.099 4.099 13 C 0.096 3.904 14 H 0.045 0.955 15 N -0.674 5.674 16 C 0.110 3.890 17 C 0.113 3.887 18 C -0.161 4.161 19 C -0.079 4.079 20 C -0.171 4.171 21 C 0.082 3.918 22 N -0.515 5.515 23 C -0.107 4.107 24 H 0.260 0.740 25 H 0.029 0.971 26 H 0.036 0.964 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.340 0.660 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.174 0.826 36 H 0.054 0.946 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 -20.797 -6.096 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.070 0.930 9 C 0.019 3.981 10 H 0.016 0.984 11 C -0.132 4.132 12 C -0.137 4.137 13 C -0.013 4.013 14 H 0.063 0.937 15 N -0.305 5.305 16 C -0.019 4.019 17 C -0.024 4.024 18 C -0.181 4.181 19 C -0.105 4.105 20 C -0.191 4.191 21 C -0.075 4.075 22 N -0.225 5.225 23 C -0.145 4.145 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.164 0.836 33 H 0.181 0.819 34 H 0.183 0.817 35 H 0.191 0.809 36 H 0.072 0.928 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.650 -20.220 -6.012 21.601 hybrid contribution 0.472 1.006 0.055 1.113 sum 5.122 -19.213 -5.956 20.757 Atomic orbital electron populations 1.70107 1.07351 1.27209 1.51358 1.25765 0.95576 1.02445 0.94893 0.85662 0.78899 0.79688 0.78153 1.20053 1.21011 1.19235 1.21660 0.93739 0.92427 1.49124 0.93004 1.19189 0.93421 0.92317 0.93211 0.98447 1.22179 0.98425 0.94623 0.97974 1.22463 0.96715 0.95245 0.99258 1.22232 0.97023 0.85813 0.96223 0.93702 1.60656 1.56938 1.07712 1.05202 1.20846 0.98712 0.87873 0.94471 1.21182 0.90481 0.96191 0.94588 1.22186 0.99489 0.94955 1.01517 1.22014 0.98422 0.95068 0.94979 1.22502 0.94607 1.02723 0.99262 1.23200 0.99534 0.88116 0.96683 1.67437 1.25497 1.16449 1.13120 1.22276 0.99396 0.96602 0.96191 0.93088 0.95174 0.94521 0.91334 0.91591 0.84179 0.94321 0.88571 0.83635 0.81934 0.81712 0.80881 0.92767 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.20 13.05 21.44 0.28 -54.92 16 2 C 0.01 0.67 5.30 84.65 0.45 1.12 16 3 Si 0.95 44.57 29.55 68.60 2.03 46.60 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -30.13 8.29 25.60 0.21 -29.92 16 8 H 0.05 2.89 7.36 -2.91 -0.02 2.87 16 9 C 0.04 1.95 2.70 -10.81 -0.03 1.92 16 10 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 11 C -0.09 -4.42 5.98 31.72 0.19 -4.23 16 12 C -0.10 -3.66 6.57 31.94 0.21 -3.45 16 13 C 0.10 3.45 3.17 45.99 0.15 3.60 16 14 H 0.05 1.61 7.85 -2.39 -0.02 1.59 16 15 N -0.67 -20.73 6.30 -490.01 -3.09 -23.82 16 16 C 0.11 2.92 5.85 85.56 0.50 3.42 16 17 C 0.11 2.81 6.29 42.55 0.27 3.08 16 18 C -0.16 -3.24 9.72 22.36 0.22 -3.03 16 19 C -0.08 -1.21 10.18 22.47 0.23 -0.98 16 20 C -0.17 -2.47 10.11 22.36 0.23 -2.24 16 21 C 0.08 1.55 11.18 84.67 0.95 2.49 16 22 N -0.51 -13.20 10.27 -183.88 -1.89 -15.09 16 23 C -0.11 -4.53 5.92 31.32 0.19 -4.35 16 24 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 25 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.04 1.80 7.85 -2.39 -0.02 1.78 16 27 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.34 10.67 8.37 -89.70 -0.75 9.92 16 30 H 0.04 1.07 8.08 -2.39 -0.02 1.05 16 31 H 0.10 2.29 8.04 -2.39 -0.02 2.27 16 32 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 35 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.05 2.21 7.96 -2.39 -0.02 2.19 16 37 H 0.05 2.06 7.38 -2.39 -0.02 2.04 16 Total: -1.00 -65.80 307.67 1.37 -64.43 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.29 Total: 15.37 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 3.75 Total: -32.57 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -4.70 Total: -93.83 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.80 1.37 -64.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378716967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.720 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds