Wall clock time and date at job start Mon Mar 30 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99744 * 2 1 4 4 H 1.48499 * 109.47028 * 269.99538 * 3 2 1 5 5 H 1.48495 * 109.47159 * 29.99919 * 3 2 1 6 6 H 1.48504 * 109.46904 * 149.99933 * 3 2 1 7 7 C 1.37874 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00418 * 0.02562 * 7 2 1 10 10 H 1.09006 * 110.43309 * 298.91262 * 9 7 2 11 11 C 1.54277 * 110.48608 * 61.44645 * 9 7 2 12 12 C 1.53875 * 106.59583 * 142.28980 * 11 9 7 13 13 C 1.54266 * 106.59819 * 0.02562 * 12 11 9 14 14 H 1.09000 * 110.48923 * 95.20214 * 13 12 11 15 15 N 1.46900 * 110.48639 * 217.70812 * 13 12 11 16 16 C 1.46902 * 111.00203 * 273.54826 * 15 13 12 17 17 C 1.50694 * 109.47206 * 179.97438 * 16 15 13 18 18 C 1.38222 * 119.61971 * 94.99891 * 17 16 15 19 19 C 1.38630 * 119.16715 * 179.97438 * 18 17 16 20 20 C 1.38674 * 118.41731 * 0.02562 * 19 18 17 21 21 C 1.38187 * 119.16260 * 359.97438 * 20 19 18 22 22 N 1.31864 * 119.62193 * 275.25273 * 17 16 15 23 23 C 1.54883 * 104.19846 * 336.38881 * 13 12 11 24 24 H 0.97005 * 120.00643 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.02981 * 23.00945 * 11 9 7 26 26 H 1.08993 * 110.07352 * 261.60141 * 11 9 7 27 27 H 1.08999 * 110.03333 * 240.71742 * 12 11 9 28 28 H 1.09006 * 110.02792 * 119.28416 * 12 11 9 29 29 H 1.00906 * 110.99657 * 37.49902 * 15 13 12 30 30 H 1.09001 * 109.46933 * 59.99794 * 16 15 13 31 31 H 1.09001 * 109.46916 * 299.99726 * 16 15 13 32 32 H 1.08003 * 120.41945 * 0.02562 * 18 17 16 33 33 H 1.07997 * 120.79161 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.41840 * 179.97438 * 20 19 18 35 35 H 1.08002 * 119.61408 * 179.97438 * 21 20 19 36 36 H 1.09004 * 110.75843 * 156.26242 * 23 13 12 37 37 H 1.09003 * 110.75460 * 279.62893 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6328 -2.5816 0.8945 11 6 0.3834 -2.6217 -1.2692 12 6 0.4450 -4.0967 -1.7030 13 6 1.3475 -4.8191 -0.6814 14 1 0.7448 -5.2806 0.1008 15 7 2.1774 -5.8288 -1.3521 16 6 1.4623 -7.1069 -1.4661 17 6 2.3428 -8.1152 -2.1581 18 6 3.1077 -8.9855 -1.4044 19 6 3.9140 -9.9097 -2.0508 20 6 3.9211 -9.9235 -3.4374 21 6 3.1296 -9.0225 -4.1240 22 7 2.3786 -8.1538 -3.4757 23 6 2.2333 -3.6927 -0.0937 24 1 -0.4851 0.8400 -0.0004 25 1 0.7830 -1.9837 -2.0575 26 1 -0.6460 -2.3404 -1.0474 27 1 0.8745 -4.1746 -2.7018 28 1 -0.5545 -4.5315 -1.6908 29 1 2.4822 -5.5030 -2.2572 30 1 0.5505 -6.9627 -2.0458 31 1 1.2064 -7.4700 -0.4707 32 1 3.0770 -8.9467 -0.3255 33 1 4.5226 -10.6017 -1.4878 34 1 4.5375 -10.6296 -3.9740 35 1 3.1299 -9.0267 -5.2040 36 1 2.6032 -3.9678 0.8941 37 1 3.0594 -3.4606 -0.7658 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378716976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:05 Heat of formation + Delta-G solvation = 19.261301 kcal Electronic energy + Delta-G solvation = -17062.960319 eV Core-core repulsion = 14418.115683 eV Total energy + Delta-G solvation = -2644.844636 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25712 -37.78740 -34.63940 -32.59398 -32.28847 -30.90180 -27.99411 -27.17679 -24.95397 -23.60192 -23.29476 -21.74198 -19.59763 -18.97003 -16.99577 -16.33746 -16.24330 -15.69377 -15.27521 -14.62615 -14.29694 -14.03965 -13.57547 -13.41260 -12.94473 -12.73122 -12.29867 -12.17774 -11.69262 -11.47933 -11.07828 -10.92054 -10.61722 -10.47004 -10.11109 -9.98424 -9.80331 -9.54292 -9.45830 -9.16814 -9.01737 -8.65455 -8.32012 -7.95234 -5.94508 -3.96754 0.99469 1.17505 3.34743 3.41306 3.44910 3.65770 4.18576 4.49015 4.60095 4.70577 4.81514 4.95943 5.03424 5.36409 5.38896 5.47220 5.59079 5.66382 5.71814 5.80357 5.95980 6.03874 6.09372 6.29394 6.56262 6.58710 6.71660 6.78885 6.89884 7.08668 7.20852 7.42581 7.54449 7.72233 7.79175 7.92491 7.98249 8.09945 8.54498 9.06452 9.66964 11.15113 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048314 B = 0.003910 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.397275 B = 7159.922530 C = 7264.836799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.027 0.973 11 C -0.092 4.092 12 C -0.154 4.154 13 C 0.081 3.919 14 H 0.073 0.927 15 N -0.677 5.677 16 C 0.105 3.895 17 C 0.138 3.862 18 C -0.153 4.153 19 C -0.078 4.078 20 C -0.181 4.181 21 C 0.098 3.902 22 N -0.482 5.482 23 C -0.099 4.099 24 H 0.258 0.742 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.343 0.657 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.048 0.952 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.662 -18.846 -4.827 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.028 3.972 10 H 0.045 0.955 11 C -0.131 4.131 12 C -0.193 4.193 13 C -0.028 4.028 14 H 0.091 0.909 15 N -0.308 5.308 16 C -0.024 4.024 17 C 0.000 4.000 18 C -0.173 4.173 19 C -0.104 4.104 20 C -0.201 4.201 21 C -0.059 4.059 22 N -0.191 5.191 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.162 0.838 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.171 0.829 36 H 0.067 0.933 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.318 -18.315 -4.713 19.398 hybrid contribution 0.322 0.495 -0.383 0.704 sum 4.640 -17.820 -5.096 19.106 Atomic orbital electron populations 1.69976 1.05861 1.26294 1.50835 1.24984 0.94826 0.98972 0.95277 0.86657 0.79933 0.83759 0.78015 1.20805 1.21358 1.19937 1.21179 0.92832 0.90541 1.50376 0.92659 1.19454 0.92290 0.91772 0.93710 0.95470 1.21999 1.00855 0.90579 0.99622 1.22963 0.98485 0.99832 0.98018 1.22597 0.93469 0.91269 0.95499 0.90856 1.60768 1.40485 1.02643 1.26855 1.20834 0.93722 0.89017 0.98857 1.21301 0.94867 0.94550 0.89246 1.21990 0.97333 0.96369 1.01646 1.21593 0.96907 0.97286 0.94641 1.22111 1.01483 1.01305 0.95193 1.22729 0.92001 0.90841 1.00348 1.67510 1.19993 1.21785 1.09843 1.22524 0.98235 0.94257 0.98682 0.93203 0.93136 0.92835 0.93283 0.93770 0.83812 0.93453 0.89725 0.84624 0.84972 0.85051 0.82941 0.93313 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 12.35 55.43 0.68 -25.28 16 2 C 0.06 1.71 5.33 -17.82 -0.09 1.61 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.24 8.40 -34.44 -0.29 -14.53 16 8 H 0.06 1.53 7.78 -52.48 -0.41 1.12 16 9 C 0.05 1.17 2.79 -90.12 -0.25 0.92 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 11 C -0.09 -2.18 5.40 -25.61 -0.14 -2.32 16 12 C -0.15 -2.95 6.42 -25.61 -0.16 -3.12 16 13 C 0.08 1.46 3.16 -66.06 -0.21 1.25 16 14 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 15 N -0.68 -10.77 6.33 -106.24 -0.67 -11.45 16 16 C 0.11 1.44 5.84 -4.98 -0.03 1.41 16 17 C 0.14 1.81 6.29 -82.59 -0.52 1.29 16 18 C -0.15 -1.68 9.72 -39.44 -0.38 -2.07 16 19 C -0.08 -0.72 10.18 -39.28 -0.40 -1.12 16 20 C -0.18 -1.61 10.11 -39.44 -0.40 -2.01 16 21 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 22 N -0.48 -6.53 10.27 -9.47 -0.10 -6.63 16 23 C -0.10 -2.09 5.97 -24.76 -0.15 -2.23 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.05 1.29 7.83 -51.93 -0.41 0.88 16 26 H 0.05 1.35 7.94 -51.93 -0.41 0.94 16 27 H 0.05 0.91 7.58 -51.93 -0.39 0.52 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.34 5.69 8.14 -39.29 -0.32 5.37 16 30 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.08 1.04 7.98 -51.93 -0.41 0.62 16 32 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.28 8.05 -51.93 -0.42 0.86 16 LS Contribution 306.85 15.07 4.62 4.62 Total: -1.00 -29.95 306.85 -9.40 -39.36 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.70 Total: 2.85 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -3.22 Total: -20.07 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.08 Total: -43.35 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.95 -9.40 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378716976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.617 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds