Wall clock time and date at job start Mon Mar 30 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99744 * 2 1 4 4 H 1.48499 * 109.47028 * 269.99538 * 3 2 1 5 5 H 1.48495 * 109.47159 * 29.99919 * 3 2 1 6 6 H 1.48504 * 109.46904 * 149.99933 * 3 2 1 7 7 C 1.37874 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00418 * 0.02562 * 7 2 1 10 10 H 1.09006 * 110.43309 * 298.91262 * 9 7 2 11 11 C 1.54277 * 110.48608 * 61.44645 * 9 7 2 12 12 C 1.53875 * 106.59583 * 142.28980 * 11 9 7 13 13 C 1.54266 * 106.59819 * 0.02562 * 12 11 9 14 14 H 1.09000 * 110.48923 * 95.20214 * 13 12 11 15 15 N 1.46900 * 110.48639 * 217.70812 * 13 12 11 16 16 C 1.46902 * 111.00203 * 273.54826 * 15 13 12 17 17 C 1.50694 * 109.47206 * 179.97438 * 16 15 13 18 18 C 1.38222 * 119.61971 * 94.99891 * 17 16 15 19 19 C 1.38630 * 119.16715 * 179.97438 * 18 17 16 20 20 C 1.38674 * 118.41731 * 0.02562 * 19 18 17 21 21 C 1.38187 * 119.16260 * 359.97438 * 20 19 18 22 22 N 1.31864 * 119.62193 * 275.25273 * 17 16 15 23 23 C 1.54883 * 104.19846 * 336.38881 * 13 12 11 24 24 H 0.97005 * 120.00643 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.02981 * 23.00945 * 11 9 7 26 26 H 1.08993 * 110.07352 * 261.60141 * 11 9 7 27 27 H 1.08999 * 110.03333 * 240.71742 * 12 11 9 28 28 H 1.09006 * 110.02792 * 119.28416 * 12 11 9 29 29 H 1.00906 * 110.99657 * 37.49902 * 15 13 12 30 30 H 1.09001 * 109.46933 * 59.99794 * 16 15 13 31 31 H 1.09001 * 109.46916 * 299.99726 * 16 15 13 32 32 H 1.08003 * 120.41945 * 0.02562 * 18 17 16 33 33 H 1.07997 * 120.79161 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.41840 * 179.97438 * 20 19 18 35 35 H 1.08002 * 119.61408 * 179.97438 * 21 20 19 36 36 H 1.09004 * 110.75843 * 156.26242 * 23 13 12 37 37 H 1.09003 * 110.75460 * 279.62893 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6328 -2.5816 0.8945 11 6 0.3834 -2.6217 -1.2692 12 6 0.4450 -4.0967 -1.7030 13 6 1.3475 -4.8191 -0.6814 14 1 0.7448 -5.2806 0.1008 15 7 2.1774 -5.8288 -1.3521 16 6 1.4623 -7.1069 -1.4661 17 6 2.3428 -8.1152 -2.1581 18 6 3.1077 -8.9855 -1.4044 19 6 3.9140 -9.9097 -2.0508 20 6 3.9211 -9.9235 -3.4374 21 6 3.1296 -9.0225 -4.1240 22 7 2.3786 -8.1538 -3.4757 23 6 2.2333 -3.6927 -0.0937 24 1 -0.4851 0.8400 -0.0004 25 1 0.7830 -1.9837 -2.0575 26 1 -0.6460 -2.3404 -1.0474 27 1 0.8745 -4.1746 -2.7018 28 1 -0.5545 -4.5315 -1.6908 29 1 2.4822 -5.5030 -2.2572 30 1 0.5505 -6.9627 -2.0458 31 1 1.2064 -7.4700 -0.4707 32 1 3.0770 -8.9467 -0.3255 33 1 4.5226 -10.6017 -1.4878 34 1 4.5375 -10.6296 -3.9740 35 1 3.1299 -9.0267 -5.2040 36 1 2.6032 -3.9678 0.8941 37 1 3.0594 -3.4606 -0.7658 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378716976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:05 Heat of formation + Delta-G solvation = 0.730100 kcal Electronic energy + Delta-G solvation = -17063.763892 eV Core-core repulsion = 14418.115683 eV Total energy + Delta-G solvation = -2645.648209 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.07197 -39.38378 -36.09786 -34.21668 -33.27432 -32.08799 -29.82702 -28.66708 -26.43412 -25.04755 -24.35301 -22.64821 -21.15256 -20.91350 -18.34550 -17.77949 -17.14284 -16.84061 -16.61689 -16.32936 -15.72292 -15.47355 -14.62316 -14.44882 -14.29136 -14.04804 -13.78769 -13.49289 -13.30066 -13.00377 -12.73124 -12.48617 -12.35382 -12.30144 -11.82644 -11.58277 -11.35127 -10.99158 -10.76510 -10.73858 -10.46970 -10.33938 -9.93485 -9.27136 -8.10591 -6.20174 0.20773 0.42756 1.41255 1.41559 1.52290 2.44330 2.80806 3.19869 3.30210 3.57016 3.83045 4.03242 4.04980 4.09770 4.26042 4.28690 4.31029 4.56085 4.61068 4.72366 4.82856 4.86955 4.91760 5.02847 5.04106 5.16948 5.24196 5.31081 5.33149 5.43791 5.46022 5.67605 5.84639 5.92932 6.00154 6.15997 6.37191 6.45063 6.91246 7.11168 7.47113 8.98223 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048314 B = 0.003910 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.397275 B = 7159.922530 C = 7264.836799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.037 3.963 10 H 0.000 1.000 11 C -0.082 4.082 12 C -0.142 4.142 13 C 0.097 3.903 14 H 0.085 0.915 15 N -0.673 5.673 16 C 0.109 3.891 17 C 0.112 3.888 18 C -0.161 4.161 19 C -0.079 4.079 20 C -0.172 4.172 21 C 0.081 3.919 22 N -0.515 5.515 23 C -0.089 4.089 24 H 0.259 0.741 25 H 0.024 0.976 26 H 0.028 0.972 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.339 0.661 30 H 0.039 0.961 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.173 0.827 36 H 0.054 0.946 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.129 -20.713 -5.170 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.018 3.982 10 H 0.018 0.982 11 C -0.121 4.121 12 C -0.181 4.181 13 C -0.013 4.013 14 H 0.104 0.896 15 N -0.303 5.303 16 C -0.020 4.020 17 C -0.025 4.025 18 C -0.181 4.181 19 C -0.105 4.105 20 C -0.191 4.191 21 C -0.076 4.076 22 N -0.226 5.226 23 C -0.128 4.128 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.158 0.842 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.182 0.818 35 H 0.190 0.810 36 H 0.073 0.927 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.795 -20.199 -5.054 21.613 hybrid contribution -0.105 1.005 -0.304 1.055 sum 5.690 -19.194 -5.358 20.724 Atomic orbital electron populations 1.70101 1.07226 1.27094 1.51558 1.25776 0.95686 1.02445 0.94947 0.85633 0.78831 0.79503 0.78171 1.20273 1.20897 1.19156 1.21557 0.92964 0.92123 1.50335 0.92978 1.19452 0.92993 0.92716 0.93034 0.98150 1.21777 0.98730 0.93353 0.98259 1.22847 0.99960 0.96614 0.98708 1.22331 0.92610 0.90965 0.95405 0.89642 1.60682 1.40179 1.02893 1.26546 1.20848 0.93418 0.88020 0.99756 1.21217 0.96217 0.95559 0.89530 1.22193 0.97225 0.96381 1.02311 1.22016 0.96376 0.96997 0.95094 1.22501 1.00533 1.00743 0.95359 1.23189 0.92037 0.90879 1.01509 1.67434 1.21441 1.23345 1.10345 1.22342 0.97427 0.93842 0.99150 0.93190 0.95737 0.95276 0.92495 0.92183 0.84247 0.94286 0.88293 0.83466 0.81881 0.81757 0.81022 0.92743 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.94 12.35 21.45 0.26 -54.68 16 2 C 0.01 0.57 5.33 84.65 0.45 1.02 16 3 Si 0.95 44.80 29.54 68.60 2.03 46.82 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.53 -30.27 8.40 25.60 0.22 -30.06 16 8 H 0.05 2.92 7.78 -2.91 -0.02 2.90 16 9 C 0.04 1.91 2.79 -10.47 -0.03 1.88 16 10 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 11 C -0.08 -4.03 5.40 31.32 0.17 -3.86 16 12 C -0.14 -5.41 6.42 31.32 0.20 -5.21 16 13 C 0.10 3.40 3.16 45.99 0.15 3.55 16 14 H 0.09 2.84 7.87 -2.39 -0.02 2.82 16 15 N -0.67 -20.63 6.33 -490.04 -3.10 -23.73 16 16 C 0.11 2.83 5.84 85.55 0.50 3.33 16 17 C 0.11 2.79 6.29 42.55 0.27 3.05 16 18 C -0.16 -3.18 9.72 22.36 0.22 -2.97 16 19 C -0.08 -1.20 10.18 22.47 0.23 -0.97 16 20 C -0.17 -2.51 10.11 22.36 0.23 -2.28 16 21 C 0.08 1.57 11.18 84.67 0.95 2.51 16 22 N -0.52 -13.41 10.27 -183.89 -1.89 -15.30 16 23 C -0.09 -3.77 5.97 31.87 0.19 -3.58 16 24 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 25 H 0.02 1.28 7.83 -2.39 -0.02 1.26 16 26 H 0.03 1.51 7.94 -2.39 -0.02 1.50 16 27 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16 28 H 0.06 2.10 8.14 -2.38 -0.02 2.09 16 29 H 0.34 10.96 8.14 -89.69 -0.73 10.23 16 30 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 31 H 0.10 2.24 7.98 -2.39 -0.02 2.22 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 2.21 8.05 -2.39 -0.02 2.19 16 Total: -1.00 -65.74 306.85 1.34 -64.40 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.31 Total: 16.06 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 3.73 Total: -33.58 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -4.73 Total: -93.71 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -65.74 1.34 -64.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378716976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.130 kcal (2) G-P(sol) polarization free energy of solvation -65.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds