Wall clock time and date at job start Mon Mar 30 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00454 * 2 1 4 4 H 1.48499 * 109.47334 * 270.00164 * 3 2 1 5 5 H 1.48504 * 109.47057 * 29.99783 * 3 2 1 6 6 H 1.48493 * 109.47561 * 150.00004 * 3 2 1 7 7 C 1.37884 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99758 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47127 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.46928 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46748 * 180.02562 * 11 10 9 13 13 C 1.46547 * 111.00625 * 48.96475 * 12 11 10 14 14 C 1.53490 * 109.11956 * 178.95542 * 13 12 11 15 15 N 1.47272 * 107.23118 * 298.28200 * 14 13 12 16 16 C 1.40473 * 117.63801 * 41.16978 * 15 14 13 17 17 C 1.38652 * 119.47309 * 168.41635 * 16 15 14 18 18 C 1.38264 * 120.00075 * 179.66084 * 17 16 15 19 19 C 1.38255 * 119.98322 * 0.02562 * 18 17 16 20 20 C 1.38129 * 120.29732 * 0.12888 * 19 18 17 21 21 C 1.39091 * 120.21786 * 359.97204 * 20 19 18 22 22 H 0.97001 * 119.99397 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47193 * 60.00794 * 9 7 2 24 24 H 1.08997 * 109.47282 * 300.00277 * 9 7 2 25 25 H 1.09001 * 109.46593 * 60.00234 * 10 9 7 26 26 H 1.08997 * 109.47108 * 300.00191 * 10 9 7 27 27 H 1.09001 * 109.47406 * 60.00593 * 11 10 9 28 28 H 1.08997 * 109.47268 * 299.99954 * 11 10 9 29 29 H 1.09003 * 109.53011 * 59.05728 * 13 12 11 30 30 H 1.09011 * 109.52715 * 298.84847 * 13 12 11 31 31 H 1.09004 * 109.90526 * 178.84800 * 14 13 12 32 32 H 1.08999 * 109.90263 * 57.71102 * 14 13 12 33 33 H 0.97006 * 121.18322 * 221.19151 * 15 14 13 34 34 H 1.07991 * 119.99688 * 359.67605 * 17 16 15 35 35 H 1.08000 * 120.00838 * 180.27607 * 18 17 16 36 36 H 1.08002 * 119.85337 * 180.10895 * 19 18 17 37 37 H 1.07997 * 119.88863 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0006 13 6 3.4580 -5.9194 1.0321 14 6 4.4144 -7.1197 1.0121 15 7 3.6173 -8.3179 1.3249 16 6 2.3446 -8.4249 0.7400 17 6 1.6622 -9.6300 0.8069 18 6 0.4059 -9.7455 0.2411 19 6 -0.1693 -8.6592 -0.3918 20 6 0.5067 -7.4568 -0.4647 21 6 1.7718 -7.3297 0.0992 22 1 -0.4849 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 2.8718 -3.6044 0.8895 26 1 2.8718 -3.6045 -0.8905 27 1 0.8538 -5.0446 -0.8914 28 1 0.8531 -5.0451 0.8885 29 1 2.9808 -5.8499 2.0097 30 1 4.0167 -5.0049 0.8324 31 1 5.1936 -6.9860 1.7625 32 1 4.8631 -7.2202 0.0238 33 1 3.9588 -9.0086 1.9142 34 1 2.1118 -10.4784 1.3012 35 1 -0.1276 -10.6828 0.2970 36 1 -1.1514 -8.7512 -0.8316 37 1 0.0514 -6.6126 -0.9610 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381269427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:29 Heat of formation + Delta-G solvation = 10.308312 kcal Electronic energy + Delta-G solvation = -17408.155013 eV Core-core repulsion = 14762.922146 eV Total energy + Delta-G solvation = -2645.232867 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47478 -38.09307 -36.68408 -35.45213 -33.27049 -31.45744 -30.73567 -29.02339 -26.92827 -24.92217 -24.59285 -22.92195 -21.63482 -20.64898 -18.59856 -18.43739 -17.61850 -17.19372 -16.51241 -16.13015 -15.95696 -15.32910 -14.96215 -14.61273 -14.56847 -14.38865 -14.02273 -13.67242 -13.51387 -13.06882 -12.68885 -12.63783 -12.50795 -12.37756 -12.18769 -11.79122 -11.54532 -11.35319 -11.19454 -10.94511 -10.66123 -10.55742 -9.04878 -8.20614 -7.99556 -6.31875 0.53407 0.71270 1.40523 1.42008 1.52982 2.40315 2.49743 2.74825 3.10898 3.12987 3.79769 3.88815 4.08280 4.17915 4.28094 4.28328 4.43190 4.49825 4.56335 4.59603 4.65004 4.74867 4.86277 4.96517 5.03256 5.09747 5.16693 5.26591 5.43476 5.49185 5.69492 5.76469 5.82731 5.89554 6.02661 6.16620 6.23841 6.50967 6.84606 6.99370 7.37552 8.91598 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037393 B = 0.004565 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.615643 B = 6132.356591 C = 6779.729885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.026 3.974 10 C -0.094 4.094 11 C 0.074 3.926 12 N -0.496 5.496 13 C 0.031 3.969 14 C 0.129 3.871 15 N -0.754 5.754 16 C 0.158 3.842 17 C -0.170 4.170 18 C -0.110 4.110 19 C -0.153 4.153 20 C -0.143 4.143 21 C 0.032 3.968 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.010 1.010 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.027 0.973 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.424 -19.412 2.984 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.052 4.052 12 N -0.211 5.211 13 C -0.097 4.097 14 C 0.004 3.996 15 N -0.390 5.390 16 C 0.055 3.945 17 C -0.193 4.193 18 C -0.129 4.129 19 C -0.173 4.173 20 C -0.165 4.165 21 C -0.069 4.069 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.008 0.992 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.252 0.748 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.674 -19.065 2.521 20.356 hybrid contribution -0.344 1.015 0.659 1.258 sum 6.331 -18.051 3.180 19.391 Atomic orbital electron populations 1.70104 1.07880 1.27796 1.51649 1.25996 0.95756 1.03430 0.94665 0.85427 0.78688 0.78307 0.78512 1.19782 1.20793 1.18565 1.21662 0.93595 0.92160 1.50592 0.91976 1.18952 0.94346 0.93010 0.94808 1.21539 0.98248 0.92192 1.01216 1.22140 0.93507 0.89136 1.00382 1.58430 1.15100 1.00854 1.46704 1.22575 0.94163 1.00968 0.91958 1.21766 0.92932 0.82744 1.02172 1.44731 1.14695 1.24977 1.54551 1.17772 0.87810 0.93266 0.95682 1.20800 0.96901 0.95583 1.05970 1.21143 0.94926 0.99155 0.97721 1.21020 1.00931 0.92709 1.02628 1.21093 0.93698 0.99477 1.02228 1.18728 0.94382 0.90350 1.03429 0.92767 0.98942 0.99200 0.92202 0.92379 0.90828 0.95424 0.94632 0.88263 0.86424 0.91954 0.74812 0.83748 0.83494 0.84756 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.54 -31.09 9.11 25.60 0.23 -30.85 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.96 4.53 30.59 0.14 -3.82 16 11 C 0.07 2.77 4.29 86.30 0.37 3.14 16 12 N -0.50 -16.37 4.68 -694.66 -3.25 -19.62 16 13 C 0.03 0.85 4.87 86.53 0.42 1.27 16 14 C 0.13 2.66 7.35 86.40 0.63 3.29 16 15 N -0.75 -15.74 5.93 -336.17 -1.99 -17.73 16 16 C 0.16 4.18 6.48 38.09 0.25 4.42 16 17 C -0.17 -3.71 9.90 22.38 0.22 -3.49 16 18 C -0.11 -2.35 10.05 22.28 0.22 -2.12 16 19 C -0.15 -3.81 10.03 22.25 0.22 -3.59 16 20 C -0.14 -4.38 9.06 22.45 0.20 -4.17 16 21 C 0.03 1.02 5.88 38.32 0.23 1.25 16 22 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 23 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H 0.06 2.39 6.34 -2.39 -0.02 2.38 16 26 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.07 2.79 6.47 -2.39 -0.02 2.78 16 28 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 2.74 6.27 -2.38 -0.01 2.73 16 31 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.41 6.16 8.89 -92.70 -0.82 5.33 16 34 H 0.14 2.28 8.06 -2.92 -0.02 2.26 16 35 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.12 3.65 6.05 -2.91 -0.02 3.64 16 Total: -1.00 -67.76 297.93 1.05 -66.71 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.23 Total: 14.09 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 3.75 Total: -32.69 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -4.96 Total: -94.50 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -67.76 1.05 -66.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381269427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.015 kcal (2) G-P(sol) polarization free energy of solvation -67.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds