Wall clock time and date at job start Mon Mar 30 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00116 * 2 1 4 4 H 1.48497 * 109.47159 * 240.00095 * 3 2 1 5 5 H 1.48500 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46940 * 119.99960 * 3 2 1 7 7 C 1.37877 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00370 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99883 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.54009 * 302.60937 * 9 7 2 11 11 C 1.54264 * 110.48701 * 65.22803 * 9 7 2 12 12 C 1.53873 * 106.60152 * 142.28569 * 11 9 7 13 13 C 1.54268 * 106.59675 * 0.02562 * 12 11 9 14 14 H 1.08999 * 110.48827 * 95.06472 * 13 12 11 15 15 N 1.46897 * 110.48860 * 217.70972 * 13 12 11 16 16 C 1.46896 * 111.00069 * 269.77750 * 15 13 12 17 17 C 1.50704 * 109.47218 * 179.97438 * 16 15 13 18 18 C 1.38676 * 120.41841 * 89.99902 * 17 16 15 19 19 C 1.38626 * 118.42400 * 180.02562 * 18 17 16 20 20 C 1.38231 * 119.15904 * 359.97438 * 19 18 17 21 21 N 1.31854 * 120.76181 * 0.02562 * 20 19 18 22 22 C 1.31888 * 121.72909 * 359.69327 * 21 20 19 23 23 C 1.54889 * 104.19728 * 336.38656 * 13 12 11 24 24 H 0.96996 * 119.99490 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.03248 * 261.57498 * 11 9 7 26 26 H 1.09005 * 110.02738 * 23.00355 * 11 9 7 27 27 H 1.08999 * 110.03697 * 240.71678 * 12 11 9 28 28 H 1.08997 * 110.07421 * 119.30435 * 12 11 9 29 29 H 1.00903 * 110.99702 * 33.72640 * 15 13 12 30 30 H 1.09000 * 109.47363 * 299.99521 * 16 15 13 31 31 H 1.09002 * 109.47321 * 59.99632 * 16 15 13 32 32 H 1.08000 * 120.78547 * 0.02562 * 18 17 16 33 33 H 1.08000 * 120.42340 * 179.97438 * 19 18 17 34 34 H 1.07993 * 119.62025 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.61881 * 180.31881 * 22 21 20 36 36 H 1.09000 * 110.75622 * 279.63120 * 23 13 12 37 37 H 1.09003 * 110.92015 * 156.32730 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5838 -2.5555 0.8595 11 6 0.4562 -2.6637 -1.3124 12 6 0.5407 -4.1520 -1.6939 13 6 1.3835 -4.8401 -0.6002 14 1 0.7373 -5.2743 0.1626 15 7 2.2489 -5.8702 -1.1900 16 6 1.5710 -7.1730 -1.2203 17 6 2.4873 -8.2020 -1.8310 18 6 3.3522 -8.9345 -1.0319 19 6 4.1772 -9.8698 -1.6371 20 6 4.1105 -10.0403 -3.0072 21 7 3.2756 -9.3258 -3.7359 22 6 2.4724 -8.4313 -3.1936 23 6 2.2359 -3.6944 -0.0005 24 1 -0.4849 0.8401 0.0004 25 1 -0.5838 -2.3764 -1.1573 26 1 0.9002 -2.0512 -2.0972 27 1 1.0257 -4.2619 -2.6639 28 1 -0.4579 -4.5877 -1.7246 29 1 2.5551 -5.6003 -2.1128 30 1 1.3138 -7.4725 -0.2044 31 1 0.6624 -7.0960 -1.8175 32 1 3.3822 -8.7799 0.0366 33 1 4.8634 -10.4577 -1.0456 34 1 4.7501 -10.7666 -3.4864 35 1 1.7983 -7.8685 -3.8222 36 1 3.0988 -3.4834 -0.6322 37 1 2.5518 -3.9347 1.0147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382088712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:47 Heat of formation + Delta-G solvation = 17.760047 kcal Electronic energy + Delta-G solvation = -17047.372135 eV Core-core repulsion = 14402.462400 eV Total energy + Delta-G solvation = -2644.909735 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26449 -37.88065 -34.91992 -32.70785 -32.08685 -30.92103 -28.04943 -27.09010 -24.92548 -23.66229 -23.34830 -21.77888 -19.65230 -19.02457 -17.21524 -16.50058 -16.30775 -15.65828 -15.14721 -14.63545 -14.26803 -14.03646 -13.59665 -13.49894 -13.13849 -12.78854 -12.38937 -12.15132 -11.83632 -11.49913 -11.15369 -10.94247 -10.64008 -10.53442 -10.17372 -9.90050 -9.85366 -9.57006 -9.52357 -9.20004 -9.05673 -8.71657 -8.34926 -8.02370 -5.97827 -4.00033 0.97021 1.18316 3.34207 3.38694 3.41566 3.66742 4.29902 4.45545 4.54798 4.70314 4.77050 4.89818 4.96299 5.27337 5.33909 5.42698 5.56186 5.58181 5.70350 5.71987 5.87019 5.99039 6.17913 6.24574 6.47357 6.56971 6.65280 6.72879 6.84402 7.03851 7.13643 7.35814 7.47663 7.64204 7.72968 7.84131 7.93106 8.05890 8.50924 9.03289 9.63852 11.12085 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048312 B = 0.003885 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.422600 B = 7204.665836 C = 7342.069760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.029 0.971 11 C -0.095 4.095 12 C -0.152 4.152 13 C 0.080 3.920 14 H 0.072 0.928 15 N -0.678 5.678 16 C 0.099 3.901 17 C -0.126 4.126 18 C -0.056 4.056 19 C -0.175 4.175 20 C 0.090 3.910 21 N -0.487 5.487 22 C 0.101 3.899 23 C -0.099 4.099 24 H 0.259 0.741 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.340 0.660 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.058 0.942 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 -17.572 -3.196 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.028 3.972 10 H 0.047 0.953 11 C -0.134 4.134 12 C -0.192 4.192 13 C -0.029 4.029 14 H 0.091 0.909 15 N -0.308 5.308 16 C -0.031 4.031 17 C -0.128 4.128 18 C -0.082 4.082 19 C -0.195 4.195 20 C -0.067 4.067 21 N -0.195 5.195 22 C -0.056 4.056 23 C -0.137 4.137 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.158 0.842 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.077 0.923 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.102 -17.708 -3.510 18.513 hybrid contribution -0.200 1.232 0.142 1.256 sum 3.901 -16.476 -3.369 17.264 Atomic orbital electron populations 1.69961 1.05883 1.26473 1.50692 1.24988 0.94828 0.98995 0.95210 0.86716 0.79633 0.83371 0.78605 1.20325 1.21410 1.20304 1.21136 0.92796 0.90527 1.50564 0.92695 1.19449 0.92552 0.91745 0.93431 0.95265 1.22041 1.00869 0.90445 1.00007 1.22944 0.98599 0.99983 0.97627 1.22601 0.93277 0.91193 0.95849 0.90926 1.60756 1.40657 1.01350 1.28077 1.20847 0.93323 0.88537 1.00356 1.20932 0.98803 0.98179 0.94917 1.21524 0.92905 0.93078 1.00732 1.22156 1.00808 1.00009 0.96488 1.22733 0.95758 0.97137 0.91087 1.67678 1.05202 1.06111 1.40527 1.22695 0.96101 0.94449 0.92365 1.22532 0.98497 0.94086 0.98613 0.93107 0.92917 0.93099 0.93343 0.93737 0.84190 0.90163 0.94163 0.84679 0.84906 0.83032 0.83091 0.92316 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 12.63 55.43 0.70 -25.04 16 2 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.08 8.36 -34.44 -0.29 -14.36 16 8 H 0.05 1.50 7.77 -52.49 -0.41 1.09 16 9 C 0.05 1.16 2.72 -90.12 -0.25 0.92 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.09 -2.18 5.60 -25.62 -0.14 -2.32 16 12 C -0.15 -2.74 6.50 -25.61 -0.17 -2.91 16 13 C 0.08 1.37 3.19 -66.05 -0.21 1.16 16 14 H 0.07 1.22 7.83 -51.93 -0.41 0.81 16 15 N -0.68 -9.86 6.35 -106.24 -0.67 -10.53 16 16 C 0.10 1.19 5.70 -4.98 -0.03 1.16 16 17 C -0.13 -1.44 5.41 -104.48 -0.57 -2.01 16 18 C -0.06 -0.58 9.86 -39.28 -0.39 -0.97 16 19 C -0.17 -1.62 10.11 -39.44 -0.40 -2.02 16 20 C 0.09 0.91 11.18 -17.54 -0.20 0.72 16 21 N -0.49 -6.02 10.36 -13.25 -0.14 -6.16 16 22 C 0.10 1.19 10.86 -17.55 -0.19 1.00 16 23 C -0.10 -2.04 5.97 -24.75 -0.15 -2.18 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.05 1.29 8.06 -51.93 -0.42 0.87 16 26 H 0.05 1.25 7.83 -51.93 -0.41 0.84 16 27 H 0.05 0.81 7.52 -51.93 -0.39 0.42 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.34 4.91 8.06 -39.29 -0.32 4.59 16 30 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 31 H 0.04 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 307.19 15.07 4.63 4.63 Total: -1.00 -29.44 307.19 -9.26 -38.70 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.70 Total: 2.24 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -3.06 Total: -20.22 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.11 Total: -41.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.44 -9.26 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382088712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.462 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds