Wall clock time and date at job start Mon Mar 30 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00116 * 2 1 4 4 H 1.48497 * 109.47159 * 240.00095 * 3 2 1 5 5 H 1.48500 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46940 * 119.99960 * 3 2 1 7 7 C 1.37877 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00370 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99883 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.54009 * 302.60937 * 9 7 2 11 11 C 1.54264 * 110.48701 * 65.22803 * 9 7 2 12 12 C 1.53873 * 106.60152 * 142.28569 * 11 9 7 13 13 C 1.54268 * 106.59675 * 0.02562 * 12 11 9 14 14 H 1.08999 * 110.48827 * 95.06472 * 13 12 11 15 15 N 1.46897 * 110.48860 * 217.70972 * 13 12 11 16 16 C 1.46896 * 111.00069 * 269.77750 * 15 13 12 17 17 C 1.50704 * 109.47218 * 179.97438 * 16 15 13 18 18 C 1.38676 * 120.41841 * 89.99902 * 17 16 15 19 19 C 1.38626 * 118.42400 * 180.02562 * 18 17 16 20 20 C 1.38231 * 119.15904 * 359.97438 * 19 18 17 21 21 N 1.31854 * 120.76181 * 0.02562 * 20 19 18 22 22 C 1.31888 * 121.72909 * 359.69327 * 21 20 19 23 23 C 1.54889 * 104.19728 * 336.38656 * 13 12 11 24 24 H 0.96996 * 119.99490 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.03248 * 261.57498 * 11 9 7 26 26 H 1.09005 * 110.02738 * 23.00355 * 11 9 7 27 27 H 1.08999 * 110.03697 * 240.71678 * 12 11 9 28 28 H 1.08997 * 110.07421 * 119.30435 * 12 11 9 29 29 H 1.00903 * 110.99702 * 33.72640 * 15 13 12 30 30 H 1.09000 * 109.47363 * 299.99521 * 16 15 13 31 31 H 1.09002 * 109.47321 * 59.99632 * 16 15 13 32 32 H 1.08000 * 120.78547 * 0.02562 * 18 17 16 33 33 H 1.08000 * 120.42340 * 179.97438 * 19 18 17 34 34 H 1.07993 * 119.62025 * 179.97438 * 20 19 18 35 35 H 1.07999 * 119.61881 * 180.31881 * 22 21 20 36 36 H 1.09000 * 110.75622 * 279.63120 * 23 13 12 37 37 H 1.09003 * 110.92015 * 156.32730 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5838 -2.5555 0.8595 11 6 0.4562 -2.6637 -1.3124 12 6 0.5407 -4.1520 -1.6939 13 6 1.3835 -4.8401 -0.6002 14 1 0.7373 -5.2743 0.1626 15 7 2.2489 -5.8702 -1.1900 16 6 1.5710 -7.1730 -1.2203 17 6 2.4873 -8.2020 -1.8310 18 6 3.3522 -8.9345 -1.0319 19 6 4.1772 -9.8698 -1.6371 20 6 4.1105 -10.0403 -3.0072 21 7 3.2756 -9.3258 -3.7359 22 6 2.4724 -8.4313 -3.1936 23 6 2.2359 -3.6944 -0.0005 24 1 -0.4849 0.8401 0.0004 25 1 -0.5838 -2.3764 -1.1573 26 1 0.9002 -2.0512 -2.0972 27 1 1.0257 -4.2619 -2.6639 28 1 -0.4579 -4.5877 -1.7246 29 1 2.5551 -5.6003 -2.1128 30 1 1.3138 -7.4725 -0.2044 31 1 0.6624 -7.0960 -1.8175 32 1 3.3822 -8.7799 0.0366 33 1 4.8634 -10.4577 -1.0456 34 1 4.7501 -10.7666 -3.4864 35 1 1.7983 -7.8685 -3.8222 36 1 3.0988 -3.4834 -0.6322 37 1 2.5518 -3.9347 1.0147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382088712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:47 Heat of formation + Delta-G solvation = -0.119176 kcal Electronic energy + Delta-G solvation = -17048.147436 eV Core-core repulsion = 14402.462400 eV Total energy + Delta-G solvation = -2645.685036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06714 -39.38477 -36.25705 -34.36773 -33.10148 -32.06893 -29.80745 -28.54913 -26.33931 -25.00178 -24.44657 -22.64703 -21.12298 -20.91282 -18.35120 -17.97106 -17.31151 -16.84629 -16.61597 -16.22038 -15.57021 -15.32814 -14.66127 -14.44182 -14.33912 -14.01358 -13.89664 -13.57707 -13.31031 -12.97530 -12.68752 -12.59508 -12.35212 -12.29347 -11.81328 -11.56989 -11.35198 -10.98438 -10.74988 -10.68482 -10.46583 -10.34794 -9.95944 -9.22698 -8.11225 -6.20374 0.18943 0.40086 1.41470 1.42672 1.50287 2.44133 2.84691 3.19525 3.40139 3.59768 3.87584 3.95504 4.05035 4.09187 4.14847 4.18865 4.30145 4.56450 4.66054 4.71537 4.80658 4.87780 4.92599 5.04102 5.06395 5.18655 5.24847 5.25573 5.41245 5.45678 5.46283 5.66731 5.82216 5.93630 6.00073 6.18703 6.41126 6.49225 6.91435 7.05726 7.46950 8.97746 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048312 B = 0.003885 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.422600 B = 7204.665836 C = 7342.069760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.037 3.963 10 H -0.001 1.001 11 C -0.087 4.087 12 C -0.140 4.140 13 C 0.097 3.903 14 H 0.081 0.919 15 N -0.678 5.678 16 C 0.103 3.897 17 C -0.135 4.135 18 C -0.065 4.065 19 C -0.170 4.170 20 C 0.082 3.918 21 N -0.515 5.515 22 C 0.088 3.912 23 C -0.091 4.091 24 H 0.259 0.741 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.341 0.659 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.147 0.853 33 H 0.163 0.837 34 H 0.177 0.823 35 H 0.158 0.842 36 H 0.051 0.949 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.084 -19.098 -3.338 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.018 3.982 10 H 0.017 0.983 11 C -0.126 4.126 12 C -0.180 4.180 13 C -0.013 4.013 14 H 0.100 0.900 15 N -0.308 5.308 16 C -0.026 4.026 17 C -0.137 4.137 18 C -0.091 4.091 19 C -0.189 4.189 20 C -0.075 4.075 21 N -0.223 5.223 22 C -0.069 4.069 23 C -0.129 4.129 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.165 0.835 33 H 0.180 0.820 34 H 0.194 0.806 35 H 0.175 0.825 36 H 0.070 0.930 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.235 -19.252 -3.655 20.283 hybrid contribution -0.513 1.651 0.202 1.741 sum 4.722 -17.601 -3.453 18.548 Atomic orbital electron populations 1.70087 1.07234 1.27177 1.51576 1.25769 0.95663 1.02418 0.94961 0.85713 0.78449 0.79245 0.78877 1.19667 1.21055 1.19580 1.21539 0.92944 0.92177 1.50328 0.93012 1.19447 0.93124 0.92664 0.93000 0.98277 1.21823 0.98551 0.93776 0.98429 1.22834 1.00218 0.96222 0.98698 1.22291 0.92545 0.90835 0.95604 0.90040 1.60637 1.40265 1.01652 1.28233 1.20845 0.93531 0.87123 1.01055 1.20870 0.99375 0.98565 0.94924 1.21804 0.92766 0.93143 1.01418 1.22478 1.00545 0.99499 0.96393 1.23248 0.95427 0.97071 0.91762 1.67689 1.06155 1.06946 1.41547 1.22849 0.96478 0.94779 0.92752 1.22355 0.97646 0.93905 0.98993 0.93179 0.95480 0.95520 0.91748 0.91908 0.83989 0.89468 0.93399 0.83493 0.81952 0.80571 0.82514 0.93016 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 12.63 21.45 0.27 -54.22 16 2 C 0.01 0.59 5.35 84.65 0.45 1.04 16 3 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -29.83 8.36 25.60 0.21 -29.61 16 8 H 0.05 2.86 7.77 -2.91 -0.02 2.83 16 9 C 0.04 1.84 2.72 -10.47 -0.03 1.82 16 10 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 11 C -0.09 -4.07 5.60 31.32 0.18 -3.90 16 12 C -0.14 -4.88 6.50 31.32 0.20 -4.67 16 13 C 0.10 3.16 3.19 45.99 0.15 3.31 16 14 H 0.08 2.55 7.83 -2.39 -0.02 2.53 16 15 N -0.68 -18.22 6.35 -490.04 -3.11 -21.33 16 16 C 0.10 2.23 5.70 85.56 0.49 2.72 16 17 C -0.13 -2.81 5.41 -19.77 -0.11 -2.92 16 18 C -0.06 -1.19 9.86 22.47 0.22 -0.97 16 19 C -0.17 -2.64 10.11 22.36 0.23 -2.42 16 20 C 0.08 1.46 11.18 84.69 0.95 2.41 16 21 N -0.51 -11.93 10.36 -195.84 -2.03 -13.96 16 22 C 0.09 1.94 10.86 84.67 0.92 2.86 16 23 C -0.09 -3.70 5.97 31.88 0.19 -3.51 16 24 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.03 1.36 8.06 -2.39 -0.02 1.34 16 26 H 0.03 1.33 7.83 -2.38 -0.02 1.31 16 27 H 0.06 2.04 7.52 -2.39 -0.02 2.02 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.34 9.14 8.06 -89.69 -0.72 8.42 16 30 H 0.09 1.77 8.03 -2.39 -0.02 1.75 16 31 H 0.05 0.98 8.09 -2.39 -0.02 0.96 16 32 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 36 H 0.05 2.16 8.05 -2.39 -0.02 2.14 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.13 307.19 1.53 -62.60 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.32 Total: 14.43 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 4.05 Total: -33.84 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -4.87 Total: -89.51 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -64.13 1.53 -62.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382088712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.482 kcal (2) G-P(sol) polarization free energy of solvation -64.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds