Wall clock time and date at job start Mon Mar 30 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 112.85126 * 2 1 4 4 N 1.46498 * 109.47059 * 48.79866 * 3 2 1 5 5 C 1.38826 * 119.99929 * 179.72446 * 4 3 2 6 6 C 1.39803 * 119.58329 * 0.27967 * 5 4 3 7 7 C 1.38598 * 119.49027 * 179.97438 * 6 5 4 8 8 C 1.38380 * 118.68061 * 359.97438 * 7 6 5 9 9 C 1.40559 * 119.15236 * 0.02562 * 8 7 6 10 10 C 1.41316 * 119.78778 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99697 * 359.97438 * 10 9 8 12 12 C 1.40026 * 119.99906 * 179.97438 * 10 9 8 13 13 N 1.30740 * 120.00312 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99593 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46927 * 60.00574 * 14 12 10 16 16 H 1.48497 * 109.47096 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47424 * 300.00091 * 14 12 10 18 18 N 1.31955 * 119.58557 * 180.02562 * 5 4 3 19 19 C 1.53783 * 113.68657 * 131.26520 * 2 1 3 20 20 C 1.53780 * 87.08079 * 89.13079 * 19 2 1 21 21 C 1.53780 * 87.08248 * 25.43062 * 20 19 2 22 22 H 1.09008 * 109.47082 * 69.67135 * 1 2 3 23 23 H 1.09004 * 109.47297 * 189.66799 * 1 2 3 24 24 H 1.08996 * 109.47277 * 309.66815 * 1 2 3 25 25 H 1.09004 * 109.47066 * 288.80133 * 3 2 1 26 26 H 1.08994 * 109.46974 * 168.80281 * 3 2 1 27 27 H 0.97001 * 120.00384 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.25142 * 359.95312 * 6 5 4 29 29 H 1.08002 * 120.65631 * 180.02562 * 7 6 5 30 30 H 1.07998 * 120.42591 * 179.97438 * 8 7 6 31 31 H 0.96995 * 120.00059 * 179.97438 * 13 12 10 32 32 H 1.09006 * 113.61445 * 203.67253 * 19 2 1 33 33 H 1.08992 * 113.62168 * 334.57854 * 19 2 1 34 34 H 1.09004 * 113.61569 * 270.88259 * 20 19 2 35 35 H 1.09001 * 113.62040 * 139.98155 * 20 19 2 36 36 H 1.09002 * 113.60970 * 220.01970 * 21 20 19 37 37 H 1.09001 * 113.61337 * 89.11929 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.4753 2.2132 1.0392 5 6 1.8554 3.5341 1.2339 6 6 2.8541 4.0907 0.4294 7 6 3.2316 5.4099 0.6250 8 6 2.6029 6.1403 1.6180 9 6 1.6059 5.5243 2.3940 10 6 0.9547 6.2579 3.4113 11 1 1.2239 7.2883 3.5906 12 6 -0.0396 5.6488 4.1866 13 7 -0.3651 4.4013 3.9698 14 14 -0.8998 6.6184 5.5318 15 1 -1.5810 7.7954 4.9351 16 1 -1.9030 5.7524 6.2018 17 1 0.1009 7.0779 6.5280 18 7 1.2659 4.2501 2.1726 19 6 2.1477 -0.9288 1.0586 20 6 2.0949 -2.0420 -0.0011 21 6 2.1460 -0.9281 -1.0602 22 1 -0.3634 0.3570 -0.9637 23 1 -0.3634 -1.0131 0.1726 24 1 -0.3633 0.6560 0.7910 25 1 1.9600 1.8733 -0.9729 26 1 3.1941 1.3532 0.1995 27 1 0.7833 1.8209 1.5942 28 1 3.3279 3.4972 -0.3385 29 1 4.0007 5.8590 0.0141 30 1 2.8753 7.1703 1.7950 31 1 -1.0536 3.9793 4.5072 32 1 3.1608 -0.6488 1.3474 33 1 1.4973 -1.1094 1.9143 34 1 1.1594 -2.6014 -0.0006 35 1 2.9743 -2.6861 -0.0021 36 1 1.4939 -1.1081 -1.9149 37 1 3.1585 -0.6478 -1.3505 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390432096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:01 Heat of formation + Delta-G solvation = 49.689155 kcal Electronic energy + Delta-G solvation = -17536.635346 eV Core-core repulsion = 14893.110161 eV Total energy + Delta-G solvation = -2643.525185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63752 -38.01715 -34.66938 -33.14363 -30.45124 -29.84794 -28.29614 -26.12367 -25.60023 -25.23153 -22.23206 -21.36698 -20.20493 -18.15480 -17.28512 -16.50750 -15.39786 -14.90235 -14.68494 -14.42525 -14.05331 -13.86716 -13.24535 -13.12783 -12.75869 -12.30387 -12.18163 -12.03878 -11.77024 -11.49888 -11.15359 -11.07237 -10.96759 -10.63098 -10.45821 -10.37575 -10.10963 -9.97947 -9.85968 -9.40743 -8.80589 -7.85089 -7.45004 -6.42548 -6.27720 -4.42619 2.93453 3.12718 3.15607 3.29522 3.35344 4.01784 4.21803 4.63319 4.67362 4.82866 4.86928 4.89955 5.29018 5.53711 5.62559 5.75497 5.85605 5.87061 5.90703 5.98039 6.09049 6.14175 6.16979 6.21546 6.28784 6.43660 6.56610 6.65084 6.92625 6.95031 7.01498 7.30555 7.66179 7.87731 7.98297 8.22256 8.44056 8.76678 8.86073 9.18762 10.30446 10.45974 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027131 B = 0.005746 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.781687 B = 4871.650786 C = 5683.008897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 C 0.158 3.842 4 N -0.735 5.735 5 C 0.411 3.589 6 C -0.368 4.368 7 C -0.032 4.032 8 C -0.318 4.318 9 C 0.293 3.707 10 C -0.436 4.436 11 H 0.082 0.918 12 C 0.072 3.928 13 N -0.717 5.717 14 Si 0.905 3.095 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.266 1.266 18 N -0.532 5.532 19 C -0.130 4.130 20 C -0.141 4.141 21 C -0.128 4.128 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.395 0.605 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.269 0.731 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 -9.997 -5.456 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 C 0.032 3.968 4 N -0.373 5.373 5 C 0.171 3.829 6 C -0.394 4.394 7 C -0.057 4.057 8 C -0.341 4.341 9 C 0.166 3.834 10 C -0.468 4.468 11 H 0.100 0.900 12 C -0.153 4.153 13 N -0.339 5.339 14 Si 0.729 3.271 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.190 1.190 18 N -0.254 5.254 19 C -0.167 4.167 20 C -0.179 4.179 21 C -0.166 4.166 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.231 0.769 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.715 -10.567 -5.025 11.723 hybrid contribution 0.106 0.684 0.222 0.727 sum 0.821 -9.883 -4.804 11.019 Atomic orbital electron populations 1.21556 0.92884 1.01515 1.02520 1.22053 0.96103 0.93912 0.97392 1.20995 0.95750 0.88670 0.91372 1.44203 1.44279 1.09360 1.39477 1.18562 0.89014 0.85096 0.90216 1.20614 1.10581 0.97800 1.10367 1.20588 0.96173 0.93482 0.95418 1.21520 1.07314 1.00193 1.05114 1.18194 0.87932 0.87212 0.90076 1.19535 1.16010 0.98369 1.12910 0.90005 1.26036 0.96606 0.94846 0.97799 1.70145 1.21469 1.10620 1.31632 0.86451 0.79376 0.80325 0.80957 1.19034 1.20389 1.19043 1.68224 1.30088 1.07457 1.19645 1.23003 1.01318 0.95733 0.96679 1.22808 1.01629 0.96359 0.97076 1.22944 1.01101 0.96020 0.96533 0.92370 0.92707 0.91515 0.93299 0.93203 0.76915 0.89301 0.89040 0.88795 0.91969 0.90027 0.91460 0.90412 0.91774 0.91499 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.90 37.15 0.33 -1.29 16 2 C -0.09 -1.21 1.09 -153.70 -0.17 -1.38 16 3 C 0.16 2.57 4.36 -4.04 -0.02 2.55 16 4 N -0.74 -15.12 5.44 -60.39 -0.33 -15.45 16 5 C 0.41 10.33 7.65 -155.32 -1.19 9.14 16 6 C -0.37 -8.77 9.34 -38.86 -0.36 -9.13 16 7 C -0.03 -0.77 10.15 -39.40 -0.40 -1.17 16 8 C -0.32 -8.28 9.83 -38.65 -0.38 -8.66 16 9 C 0.29 8.36 6.55 -85.00 -0.56 7.80 16 10 C -0.44 -12.06 9.14 -37.74 -0.34 -12.40 16 11 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 12 C 0.07 1.88 5.50 -17.35 -0.10 1.78 16 13 N -0.72 -19.36 11.46 55.55 0.64 -18.72 16 14 Si 0.90 19.01 29.56 -169.99 -5.02 13.99 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 N -0.53 -15.06 7.89 -10.32 -0.08 -15.14 16 19 C -0.13 -1.58 7.21 -25.92 -0.19 -1.77 16 20 C -0.14 -1.42 7.73 -25.92 -0.20 -1.62 16 21 C -0.13 -1.36 7.23 -25.92 -0.19 -1.55 16 22 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 23 H 0.05 0.60 7.34 -51.93 -0.38 0.22 16 24 H 0.07 0.97 6.28 -51.93 -0.33 0.65 16 25 H 0.05 0.81 7.92 -51.93 -0.41 0.40 16 26 H 0.05 0.82 7.72 -51.93 -0.40 0.42 16 27 H 0.39 8.14 6.87 -40.82 -0.28 7.86 16 28 H 0.09 1.90 6.68 -52.49 -0.35 1.55 16 29 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.27 6.61 8.29 -40.82 -0.34 6.28 16 32 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 33 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.08 0.73 7.64 -51.93 -0.40 0.33 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -29.68 301.59 -9.47 -39.15 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.46 Total: 9.33 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -3.76 Total: -17.70 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.23 Total: -49.32 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.68 -9.47 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390432096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.843 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds