Wall clock time and date at job start Mon Mar 30 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08999 * 110.43195 * 60.80642 * 9 7 2 11 11 C 1.54261 * 110.48402 * 298.26568 * 9 7 2 12 12 C 1.53874 * 106.60056 * 217.71282 * 11 9 7 13 13 C 1.54274 * 106.59583 * 0.02562 * 12 11 9 14 14 H 1.08998 * 110.48432 * 264.92923 * 13 12 11 15 15 N 1.46891 * 110.48375 * 142.42106 * 13 12 11 16 16 C 1.46900 * 111.00097 * 86.45454 * 15 13 12 17 17 C 1.50703 * 109.47244 * 179.97438 * 16 15 13 18 18 C 1.38652 * 120.79129 * 269.71879 * 17 16 15 19 19 C 1.38205 * 119.16342 * 179.75268 * 18 17 16 20 20 N 1.31870 * 120.76081 * 0.53725 * 19 18 17 21 21 C 1.31870 * 121.72775 * 359.73717 * 20 19 18 22 22 C 1.38200 * 120.76374 * 359.97438 * 21 20 19 23 23 C 1.54885 * 110.48505 * 183.49209 * 9 7 2 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 110.03324 * 336.99906 * 11 9 7 26 26 H 1.09007 * 110.03391 * 98.38096 * 11 9 7 27 27 H 1.08998 * 110.03509 * 119.28327 * 12 11 9 28 28 H 1.08998 * 110.03264 * 240.67144 * 12 11 9 29 29 H 1.00897 * 111.00218 * 322.49813 * 15 13 12 30 30 H 1.08994 * 109.47452 * 299.99404 * 16 15 13 31 31 H 1.08999 * 109.47186 * 60.00190 * 16 15 13 32 32 H 1.08001 * 120.41523 * 0.02562 * 18 17 16 33 33 H 1.07995 * 119.62113 * 180.24800 * 19 18 17 34 34 H 1.08004 * 119.62033 * 180.02562 * 21 20 19 35 35 H 1.08005 * 120.42289 * 180.02562 * 22 21 20 36 36 H 1.09002 * 110.75604 * 274.93532 * 23 9 7 37 37 H 1.09004 * 110.75942 * 38.30341 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6330 -2.5778 -0.8999 11 6 0.3829 -2.6271 1.2634 12 6 0.4442 -4.1040 1.6910 13 6 1.3480 -4.8219 0.6674 14 1 0.7463 -5.2781 -0.1187 15 7 2.1749 -5.8363 1.3343 16 6 1.4578 -7.1141 1.4395 17 6 2.3359 -8.1279 2.1268 18 6 3.1856 -8.9433 1.3949 19 6 3.9799 -9.8579 2.0602 20 7 3.9280 -9.9669 3.3734 21 6 3.1281 -9.2120 4.1009 22 6 2.3091 -8.2713 3.5056 23 6 2.2336 -3.6930 0.0848 24 1 -0.4850 0.8401 -0.0004 25 1 0.7822 -1.9924 2.0546 26 1 -0.6462 -2.3442 1.0419 27 1 0.8733 -4.1861 2.6896 28 1 -0.5554 -4.5384 1.6775 29 1 2.4782 -5.5161 2.2418 30 1 0.5451 -6.9720 2.0179 31 1 1.2037 -7.4713 0.4415 32 1 3.2293 -8.8616 0.3189 33 1 4.6473 -10.4939 1.4978 34 1 3.1133 -9.3296 5.1744 35 1 1.6564 -7.6557 4.1068 36 1 2.6042 -3.9638 -0.9039 37 1 3.0593 -3.4637 0.7585 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393490775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:05 Heat of formation + Delta-G solvation = 0.008693 kcal Electronic energy + Delta-G solvation = -17053.271263 eV Core-core repulsion = 14407.591772 eV Total energy + Delta-G solvation = -2645.679492 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.05094 -39.41721 -36.37178 -34.45372 -32.73860 -32.06690 -29.83140 -28.74241 -26.47522 -25.05745 -24.33112 -22.65474 -21.15324 -20.91631 -18.35096 -17.68678 -17.27238 -16.68339 -16.58774 -16.43474 -15.75139 -15.41639 -14.71776 -14.55619 -14.35761 -14.15593 -13.98998 -13.41194 -13.20509 -12.96999 -12.75748 -12.52022 -12.36285 -12.19213 -11.86178 -11.57220 -11.34106 -11.01441 -10.74032 -10.57601 -10.47513 -10.38879 -10.02621 -9.27053 -8.11439 -6.20795 0.26266 0.30673 1.40771 1.41567 1.51741 2.43791 2.85856 3.19284 3.36495 3.64052 3.76094 3.87832 4.04426 4.07696 4.23317 4.28559 4.29220 4.53523 4.64601 4.72217 4.80241 4.86518 4.95762 5.02570 5.05626 5.08612 5.17482 5.24675 5.43426 5.45774 5.47807 5.67522 5.83116 5.94013 5.99966 6.15346 6.39996 6.47363 6.90904 7.07007 7.46650 8.97244 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048123 B = 0.003881 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.707831 B = 7212.251019 C = 7332.176616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.036 3.964 10 H -0.002 1.002 11 C -0.084 4.084 12 C -0.141 4.141 13 C 0.097 3.903 14 H 0.082 0.918 15 N -0.677 5.677 16 C 0.097 3.903 17 C -0.043 4.043 18 C -0.158 4.158 19 C 0.086 3.914 20 N -0.515 5.515 21 C 0.086 3.914 22 C -0.171 4.171 23 C -0.091 4.091 24 H 0.259 0.741 25 H 0.025 0.975 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.343 0.657 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.148 0.852 36 H 0.050 0.950 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -17.327 5.542 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.017 3.983 10 H 0.016 0.984 11 C -0.122 4.122 12 C -0.181 4.181 13 C -0.012 4.012 14 H 0.100 0.900 15 N -0.307 5.307 16 C -0.031 4.031 17 C -0.052 4.052 18 C -0.178 4.178 19 C -0.070 4.070 20 N -0.225 5.225 21 C -0.070 4.070 22 C -0.191 4.191 23 C -0.129 4.129 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.165 0.835 33 H 0.192 0.808 34 H 0.192 0.808 35 H 0.166 0.834 36 H 0.069 0.931 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.693 -18.015 5.381 19.161 hybrid contribution -1.035 2.165 0.151 2.404 sum 2.658 -15.851 5.532 16.997 Atomic orbital electron populations 1.70100 1.07191 1.27074 1.51579 1.25760 0.95670 1.02383 0.94972 0.85655 0.78799 0.79593 0.78225 1.20171 1.20992 1.19266 1.21565 0.92946 0.92164 1.50299 0.93037 1.19459 0.93028 0.92694 0.93134 0.98414 1.21775 0.98613 0.93679 0.98180 1.22850 1.00024 0.96315 0.98872 1.22290 0.92570 0.90872 0.95510 0.90011 1.60603 1.40569 1.02770 1.26740 1.20944 0.93642 0.87911 1.00644 1.20378 0.95690 0.95136 0.94001 1.22264 0.96657 0.96496 1.02388 1.23140 0.97121 0.96523 0.90260 1.67687 1.20986 1.25370 1.08430 1.23113 0.91294 0.91333 1.01241 1.22300 1.01434 1.00416 0.94959 1.22349 0.97518 0.93951 0.99105 0.93200 0.95586 0.95402 0.91765 0.91940 0.83873 0.93150 0.89380 0.83500 0.80799 0.80807 0.83441 0.93132 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.93 12.36 21.45 0.27 -53.67 16 2 C 0.01 0.60 5.33 84.66 0.45 1.05 16 3 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.53 -29.62 8.40 25.60 0.21 -29.41 16 8 H 0.05 2.83 7.77 -2.91 -0.02 2.81 16 9 C 0.04 1.79 2.79 -10.47 -0.03 1.76 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 11 C -0.08 -3.89 5.41 31.32 0.17 -3.72 16 12 C -0.14 -4.83 6.43 31.32 0.20 -4.63 16 13 C 0.10 3.13 3.15 45.99 0.15 3.28 16 14 H 0.08 2.54 7.87 -2.39 -0.02 2.52 16 15 N -0.68 -17.85 6.33 -490.09 -3.10 -20.95 16 16 C 0.10 2.04 5.71 85.56 0.49 2.53 16 17 C -0.04 -0.88 5.43 -19.67 -0.11 -0.99 16 18 C -0.16 -3.05 9.82 22.36 0.22 -2.83 16 19 C 0.09 1.66 11.18 84.68 0.95 2.61 16 20 N -0.51 -11.45 10.36 -195.85 -2.03 -13.48 16 21 C 0.09 1.65 11.18 84.68 0.95 2.59 16 22 C -0.17 -3.16 9.82 22.36 0.22 -2.94 16 23 C -0.09 -3.67 5.97 31.87 0.19 -3.48 16 24 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 25 H 0.03 1.29 7.83 -2.38 -0.02 1.27 16 26 H 0.03 1.39 7.94 -2.38 -0.02 1.37 16 27 H 0.06 1.99 7.57 -2.39 -0.02 1.97 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.34 8.91 8.14 -89.70 -0.73 8.18 16 30 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 31 H 0.09 1.77 8.04 -2.39 -0.02 1.75 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 2.17 8.05 -2.38 -0.02 2.15 16 Total: -1.00 -63.32 306.79 1.53 -61.79 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.31 Total: 14.41 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 4.06 Total: -34.17 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -4.87 Total: -88.10 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -63.32 1.53 -61.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393490775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.804 kcal (2) G-P(sol) polarization free energy of solvation -63.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds