Wall clock time and date at job start Mon Mar 30 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47475 * 239.99600 * 3 2 1 5 5 H 1.48494 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46794 * 119.99992 * 3 2 1 7 7 C 1.37875 * 120.00630 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99476 * 359.97438 * 7 2 1 10 10 H 1.08993 * 110.81986 * 298.11464 * 9 7 2 11 11 C 1.54894 * 110.75529 * 61.45805 * 9 7 2 12 12 C 1.54266 * 104.31305 * 156.31998 * 11 9 7 13 13 C 1.53869 * 106.60031 * 336.32486 * 12 11 9 14 14 H 1.08999 * 110.04012 * 119.28327 * 13 12 11 15 15 N 1.46903 * 110.03061 * 240.66752 * 13 12 11 16 16 C 1.46902 * 110.99776 * 273.54487 * 15 13 12 17 17 C 1.50707 * 109.46914 * 179.97438 * 16 15 13 18 18 C 1.38646 * 120.78965 * 269.71373 * 17 16 15 19 19 C 1.38200 * 119.16169 * 179.79745 * 18 17 16 20 20 N 1.31865 * 120.76638 * 0.49189 * 19 18 17 21 21 C 1.31874 * 121.72502 * 359.74189 * 20 19 18 22 22 C 1.38201 * 120.76250 * 0.02562 * 21 20 19 23 23 C 1.54266 * 106.59800 * 359.97438 * 13 12 11 24 24 H 0.97000 * 120.00523 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.48891 * 37.57424 * 11 9 7 26 26 H 1.08998 * 110.48494 * 275.06511 * 11 9 7 27 27 H 1.09001 * 110.03084 * 95.60669 * 12 11 9 28 28 H 1.08995 * 110.03255 * 217.03136 * 12 11 9 29 29 H 1.00900 * 111.00282 * 149.59355 * 15 13 12 30 30 H 1.08996 * 109.46956 * 299.99682 * 16 15 13 31 31 H 1.08995 * 109.47297 * 60.00162 * 16 15 13 32 32 H 1.07999 * 120.41858 * 0.02562 * 18 17 16 33 33 H 1.08007 * 119.61892 * 180.21037 * 19 18 17 34 34 H 1.07999 * 119.61780 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.42044 * 180.02562 * 22 21 20 36 36 H 1.09005 * 110.48526 * 142.29451 * 23 13 12 37 37 H 1.09006 * 110.48581 * 264.93644 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6420 -2.5948 0.8982 11 6 0.3768 -2.6282 -1.2726 12 6 0.1790 -4.1481 -1.4468 13 6 1.3539 -4.8300 -0.7241 14 1 0.9801 -5.4686 0.0762 15 7 2.1376 -5.6261 -1.6781 16 6 1.5759 -6.9757 -1.8239 17 6 2.4040 -7.7607 -2.8084 18 6 2.0976 -7.7506 -4.1606 19 6 2.8822 -8.4794 -5.0342 20 7 3.9050 -9.1856 -4.5938 21 6 4.2227 -9.2222 -3.3144 22 6 3.4867 -8.5150 -2.3827 23 6 2.2250 -3.7006 -0.1365 24 1 -0.4851 0.8400 0.0004 25 1 0.8946 -2.2094 -2.1356 26 1 -0.5832 -2.1327 -1.1276 27 1 -0.7651 -4.4558 -0.9972 28 1 0.1907 -4.4073 -2.5055 29 1 3.1080 -5.6660 -1.4044 30 1 1.5854 -7.4795 -0.8574 31 1 0.5506 -6.9052 -2.1869 32 1 1.2587 -7.1776 -4.5269 33 1 2.6523 -8.4740 -6.0895 34 1 5.0679 -9.8118 -2.9910 35 1 3.7521 -8.5486 -1.3363 36 1 2.6140 -3.9879 0.8404 37 1 3.0412 -3.4554 -0.8161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393490778.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:06 Heat of formation + Delta-G solvation = 19.709121 kcal Electronic energy + Delta-G solvation = -17089.508724 eV Core-core repulsion = 14444.683507 eV Total energy + Delta-G solvation = -2644.825217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23392 -37.85314 -35.03518 -32.73487 -31.37396 -31.28848 -28.09168 -27.32143 -24.94478 -23.60574 -23.46650 -21.78582 -19.34126 -18.96349 -16.81681 -16.51052 -16.32539 -15.69127 -15.26072 -14.70310 -14.56771 -14.18471 -13.81345 -13.62356 -13.04343 -12.70508 -12.32377 -12.05236 -11.63104 -11.53767 -10.99110 -10.82313 -10.58884 -10.52042 -10.13026 -9.92149 -9.69010 -9.57774 -9.44199 -9.24758 -9.10415 -8.75527 -8.33349 -8.16466 -5.97327 -4.00183 1.04131 1.14289 3.34060 3.38630 3.41330 3.69446 4.34621 4.40857 4.47953 4.63628 4.75206 5.00312 5.05576 5.32921 5.34917 5.44715 5.54095 5.61792 5.70174 5.71630 5.89896 5.93112 6.27599 6.31375 6.48524 6.60185 6.62531 6.76754 6.88458 6.99137 7.14870 7.35904 7.52474 7.61855 7.78059 7.86000 7.95349 8.07183 8.48635 9.01456 9.63596 11.11874 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041504 B = 0.004033 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.471707 B = 6940.692242 C = 7078.500676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.053 3.947 10 H 0.027 0.973 11 C -0.097 4.097 12 C -0.117 4.117 13 C 0.083 3.917 14 H 0.034 0.966 15 N -0.675 5.675 16 C 0.093 3.907 17 C -0.031 4.031 18 C -0.151 4.151 19 C 0.094 3.906 20 N -0.491 5.491 21 C 0.095 3.905 22 C -0.170 4.170 23 C -0.119 4.119 24 H 0.259 0.741 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.338 0.662 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.043 0.957 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 -16.005 -4.872 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.034 3.966 10 H 0.045 0.955 11 C -0.136 4.136 12 C -0.156 4.156 13 C -0.026 4.026 14 H 0.052 0.948 15 N -0.306 5.306 16 C -0.036 4.036 17 C -0.040 4.040 18 C -0.171 4.171 19 C -0.062 4.062 20 N -0.201 5.201 21 C -0.062 4.062 22 C -0.190 4.190 23 C -0.157 4.157 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.156 0.844 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.061 0.939 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.141 -16.103 -6.006 17.471 hybrid contribution 0.196 1.016 1.445 1.777 sum 3.337 -15.087 -4.561 16.111 Atomic orbital electron populations 1.69944 1.05866 1.26462 1.50609 1.24959 0.94825 0.98945 0.95129 0.86712 0.79638 0.83373 0.78568 1.20295 1.21364 1.20375 1.21080 0.92732 0.90568 1.50781 0.92798 1.19575 0.91997 0.91057 0.93937 0.95461 1.22243 1.01268 0.90505 0.99537 1.22302 0.95251 0.98815 0.99197 1.22338 0.95039 0.93936 0.91255 0.94789 1.60750 1.06215 1.11049 1.52627 1.20971 0.98063 0.89028 0.95502 1.20338 0.94621 0.94134 0.94878 1.22086 1.01601 1.00014 0.93444 1.22761 0.90681 0.92521 1.00242 1.67651 1.16402 1.18972 1.17035 1.22694 0.98367 0.96697 0.88450 1.22080 0.96592 0.99021 1.01347 1.22724 0.99022 0.95871 0.98101 0.93083 0.93442 0.91603 0.93742 0.92464 0.84409 0.94319 0.89823 0.84581 0.82849 0.82976 0.85093 0.93851 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 12.01 55.43 0.67 -24.92 16 2 C 0.06 1.75 5.33 -17.82 -0.10 1.65 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.12 8.55 -34.44 -0.29 -14.41 16 8 H 0.05 1.46 7.79 -52.49 -0.41 1.05 16 9 C 0.05 1.31 2.84 -89.57 -0.25 1.06 16 10 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 11 C -0.10 -2.28 5.56 -25.07 -0.14 -2.42 16 12 C -0.12 -2.22 6.48 -25.62 -0.17 -2.38 16 13 C 0.08 1.44 3.24 -66.60 -0.22 1.22 16 14 H 0.03 0.56 7.83 -51.93 -0.41 0.16 16 15 N -0.67 -10.00 6.14 -106.81 -0.66 -10.66 16 16 C 0.09 1.14 5.69 -4.97 -0.03 1.11 16 17 C -0.03 -0.36 5.43 -104.32 -0.57 -0.93 16 18 C -0.15 -1.69 9.82 -39.44 -0.39 -2.07 16 19 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 20 N -0.49 -5.98 10.36 -13.25 -0.14 -6.12 16 21 C 0.09 1.00 11.18 -17.55 -0.20 0.81 16 22 C -0.17 -1.77 9.82 -39.44 -0.39 -2.16 16 23 C -0.12 -2.41 5.69 -24.87 -0.14 -2.55 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.05 1.17 8.04 -51.93 -0.42 0.76 16 26 H 0.07 1.68 7.37 -51.93 -0.38 1.29 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.04 7.92 -51.93 -0.41 0.63 16 29 H 0.34 4.79 8.35 -39.29 -0.33 4.47 16 30 H 0.04 0.44 8.03 -51.93 -0.42 0.02 16 31 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 32 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.35 7.89 -51.93 -0.41 0.94 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -29.48 306.42 -9.29 -38.78 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.69 Total: 2.18 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -3.07 Total: -20.23 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.13 Total: -41.70 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.48 -9.29 -38.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393490778.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.487 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds