Wall clock time and date at job start Mon Mar 30 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47475 * 239.99600 * 3 2 1 5 5 H 1.48494 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46794 * 119.99992 * 3 2 1 7 7 C 1.37875 * 120.00630 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99476 * 359.97438 * 7 2 1 10 10 H 1.08993 * 110.81986 * 298.11464 * 9 7 2 11 11 C 1.54894 * 110.75529 * 61.45805 * 9 7 2 12 12 C 1.54266 * 104.31305 * 156.31998 * 11 9 7 13 13 C 1.53869 * 106.60031 * 336.32486 * 12 11 9 14 14 H 1.08999 * 110.04012 * 119.28327 * 13 12 11 15 15 N 1.46903 * 110.03061 * 240.66752 * 13 12 11 16 16 C 1.46902 * 110.99776 * 273.54487 * 15 13 12 17 17 C 1.50707 * 109.46914 * 179.97438 * 16 15 13 18 18 C 1.38646 * 120.78965 * 269.71373 * 17 16 15 19 19 C 1.38200 * 119.16169 * 179.79745 * 18 17 16 20 20 N 1.31865 * 120.76638 * 0.49189 * 19 18 17 21 21 C 1.31874 * 121.72502 * 359.74189 * 20 19 18 22 22 C 1.38201 * 120.76250 * 0.02562 * 21 20 19 23 23 C 1.54266 * 106.59800 * 359.97438 * 13 12 11 24 24 H 0.97000 * 120.00523 * 359.97438 * 1 2 3 25 25 H 1.09002 * 110.48891 * 37.57424 * 11 9 7 26 26 H 1.08998 * 110.48494 * 275.06511 * 11 9 7 27 27 H 1.09001 * 110.03084 * 95.60669 * 12 11 9 28 28 H 1.08995 * 110.03255 * 217.03136 * 12 11 9 29 29 H 1.00900 * 111.00282 * 149.59355 * 15 13 12 30 30 H 1.08996 * 109.46956 * 299.99682 * 16 15 13 31 31 H 1.08995 * 109.47297 * 60.00162 * 16 15 13 32 32 H 1.07999 * 120.41858 * 0.02562 * 18 17 16 33 33 H 1.08007 * 119.61892 * 180.21037 * 19 18 17 34 34 H 1.07999 * 119.61780 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.42044 * 180.02562 * 22 21 20 36 36 H 1.09005 * 110.48526 * 142.29451 * 23 13 12 37 37 H 1.09006 * 110.48581 * 264.93644 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6420 -2.5948 0.8982 11 6 0.3768 -2.6282 -1.2726 12 6 0.1790 -4.1481 -1.4468 13 6 1.3539 -4.8300 -0.7241 14 1 0.9801 -5.4686 0.0762 15 7 2.1376 -5.6261 -1.6781 16 6 1.5759 -6.9757 -1.8239 17 6 2.4040 -7.7607 -2.8084 18 6 2.0976 -7.7506 -4.1606 19 6 2.8822 -8.4794 -5.0342 20 7 3.9050 -9.1856 -4.5938 21 6 4.2227 -9.2222 -3.3144 22 6 3.4867 -8.5150 -2.3827 23 6 2.2250 -3.7006 -0.1365 24 1 -0.4851 0.8400 0.0004 25 1 0.8946 -2.2094 -2.1356 26 1 -0.5832 -2.1327 -1.1276 27 1 -0.7651 -4.4558 -0.9972 28 1 0.1907 -4.4073 -2.5055 29 1 3.1080 -5.6660 -1.4044 30 1 1.5854 -7.4795 -0.8574 31 1 0.5506 -6.9052 -2.1869 32 1 1.2587 -7.1776 -4.5269 33 1 2.6523 -8.4740 -6.0895 34 1 5.0679 -9.8118 -2.9910 35 1 3.7521 -8.5486 -1.3363 36 1 2.6140 -3.9879 0.8404 37 1 3.0412 -3.4554 -0.8161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393490778.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:06 Heat of formation + Delta-G solvation = 2.006584 kcal Electronic energy + Delta-G solvation = -17090.276363 eV Core-core repulsion = 14444.683507 eV Total energy + Delta-G solvation = -2645.592856 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.05402 -39.35061 -36.34862 -34.44091 -32.74318 -32.07205 -29.87017 -28.75625 -26.37181 -25.25149 -24.32879 -22.68881 -21.11652 -20.54205 -18.39541 -17.64848 -17.37084 -16.70376 -16.57967 -16.46295 -15.74697 -15.62157 -14.73964 -14.56356 -14.46223 -14.10179 -13.93709 -13.39405 -13.11908 -12.95503 -12.72466 -12.39258 -12.37994 -11.99815 -11.83462 -11.57919 -11.29703 -11.01425 -10.78418 -10.56281 -10.43624 -10.39632 -10.03158 -9.33348 -8.09678 -6.19550 0.25771 0.30285 1.41975 1.43239 1.50699 2.44571 2.85454 3.20744 3.36548 3.63512 3.74767 3.88711 4.01674 4.12418 4.23280 4.27785 4.36578 4.52086 4.62229 4.76491 4.79298 4.87791 4.94878 4.99954 5.07633 5.18263 5.19864 5.28906 5.39931 5.46521 5.50129 5.68474 5.82701 5.93282 6.03450 6.20898 6.40989 6.47959 6.90642 7.06491 7.47654 8.98443 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.041504 B = 0.004033 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.471707 B = 6940.692242 C = 7078.500676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.040 3.960 10 H 0.000 1.000 11 C -0.090 4.090 12 C -0.107 4.107 13 C 0.097 3.903 14 H 0.051 0.949 15 N -0.680 5.680 16 C 0.098 3.902 17 C -0.043 4.043 18 C -0.160 4.160 19 C 0.086 3.914 20 N -0.515 5.515 21 C 0.087 3.913 22 C -0.169 4.169 23 C -0.109 4.109 24 H 0.259 0.741 25 H 0.025 0.975 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.344 0.656 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.143 0.857 33 H 0.173 0.827 34 H 0.177 0.823 35 H 0.151 0.849 36 H 0.054 0.946 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -17.225 -4.952 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.021 3.979 10 H 0.018 0.982 11 C -0.128 4.128 12 C -0.146 4.146 13 C -0.012 4.012 14 H 0.069 0.931 15 N -0.312 5.312 16 C -0.031 4.031 17 C -0.052 4.052 18 C -0.180 4.180 19 C -0.071 4.071 20 N -0.225 5.225 21 C -0.070 4.070 22 C -0.189 4.189 23 C -0.147 4.147 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.162 0.838 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.161 0.839 33 H 0.190 0.810 34 H 0.194 0.806 35 H 0.169 0.831 36 H 0.073 0.927 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.094 -17.339 -6.089 18.828 hybrid contribution -0.089 1.373 1.467 2.011 sum 4.006 -15.966 -4.622 17.097 Atomic orbital electron populations 1.70075 1.07189 1.27140 1.51412 1.25742 0.95661 1.02343 0.94891 0.85717 0.78458 0.79302 0.78813 1.19784 1.21027 1.19564 1.21490 0.92931 0.92193 1.50568 0.93016 1.19584 0.92906 0.92203 0.93193 0.98155 1.22026 0.99065 0.93722 0.98005 1.22190 0.96764 0.95280 1.00321 1.22041 0.93876 0.93477 0.91787 0.93138 1.60623 1.06354 1.12636 1.51627 1.20958 0.97996 0.87652 0.96445 1.20373 0.95195 0.94718 0.94883 1.22251 1.01955 1.00212 0.93589 1.23109 0.90404 0.92217 1.01323 1.67687 1.17068 1.19680 1.18020 1.23144 0.98994 0.96755 0.88067 1.22305 0.95933 0.98295 1.02392 1.22541 0.98141 0.95050 0.98936 0.93172 0.95657 0.94555 0.92560 0.91448 0.83771 0.92868 0.89789 0.83874 0.80957 0.80633 0.83109 0.92690 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.01 12.01 21.44 0.26 -53.75 16 2 C 0.01 0.69 5.33 84.66 0.45 1.14 16 3 Si 0.95 44.11 29.54 68.60 2.03 46.13 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.53 -29.78 8.55 25.60 0.22 -29.56 16 8 H 0.05 2.83 7.79 -2.91 -0.02 2.80 16 9 C 0.04 2.01 2.84 -10.12 -0.03 1.98 16 10 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 11 C -0.09 -4.29 5.56 31.67 0.18 -4.11 16 12 C -0.11 -3.93 6.48 31.32 0.20 -3.73 16 13 C 0.10 3.17 3.24 45.64 0.15 3.32 16 14 H 0.05 1.51 7.83 -2.39 -0.02 1.49 16 15 N -0.68 -18.47 6.14 -491.83 -3.02 -21.49 16 16 C 0.10 2.11 5.69 85.56 0.49 2.60 16 17 C -0.04 -0.89 5.43 -19.67 -0.11 -1.00 16 18 C -0.16 -3.28 9.82 22.36 0.22 -3.06 16 19 C 0.09 1.74 11.18 84.68 0.95 2.69 16 20 N -0.51 -11.66 10.36 -195.84 -2.03 -13.69 16 21 C 0.09 1.64 11.18 84.68 0.95 2.59 16 22 C -0.17 -3.08 9.82 22.36 0.22 -2.86 16 23 C -0.11 -4.29 5.69 31.80 0.18 -4.11 16 24 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.02 1.27 8.04 -2.39 -0.02 1.25 16 26 H 0.04 1.90 7.37 -2.39 -0.02 1.89 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.33 7.92 -2.39 -0.02 2.31 16 29 H 0.34 8.84 8.35 -89.69 -0.75 8.09 16 30 H 0.05 1.02 8.03 -2.39 -0.02 1.00 16 31 H 0.08 1.82 8.05 -2.39 -0.02 1.80 16 32 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.18 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.06 2.37 7.89 -2.38 -0.02 2.35 16 Total: -1.00 -63.63 306.42 1.59 -62.04 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.30 Total: 14.87 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 4.06 Total: -34.11 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -4.79 Total: -88.93 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -63.63 1.59 -62.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393490778.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.046 kcal (2) G-P(sol) polarization free energy of solvation -63.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds