Wall clock time and date at job start Mon Mar 30 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48497 * 109.47072 * 274.98392 * 3 2 1 5 5 H 1.48506 * 109.47182 * 34.97994 * 3 2 1 6 6 H 1.48496 * 109.47484 * 154.98220 * 3 2 1 7 7 C 1.37879 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99770 * 188.65920 * 7 2 1 9 9 C 1.50701 * 120.00019 * 8.65562 * 7 2 1 10 10 H 1.09003 * 110.43320 * 302.78616 * 9 7 2 11 11 C 1.54897 * 110.48485 * 65.32419 * 9 7 2 12 12 C 1.54890 * 102.74423 * 156.75570 * 11 9 7 13 13 C 1.54262 * 104.19440 * 322.05694 * 12 11 9 14 14 H 1.09002 * 110.03343 * 264.32607 * 13 12 11 15 15 N 1.46903 * 110.02969 * 142.94837 * 13 12 11 16 16 C 1.46907 * 110.99999 * 87.09392 * 15 13 12 17 17 C 1.50704 * 109.46793 * 180.02562 * 16 15 13 18 18 C 1.38645 * 120.78651 * 269.71123 * 17 16 15 19 19 C 1.38204 * 119.16054 * 179.75637 * 18 17 16 20 20 N 1.31878 * 120.76415 * 0.53750 * 19 18 17 21 21 C 1.31867 * 121.71989 * 359.73746 * 20 19 18 22 22 C 1.38201 * 120.76921 * 359.97438 * 21 20 19 23 23 C 1.53867 * 106.60316 * 23.61502 * 13 12 11 24 24 H 0.96996 * 119.99782 * 359.97438 * 1 2 3 25 25 H 1.08993 * 110.75169 * 38.44052 * 11 9 7 26 26 H 1.08997 * 110.75442 * 275.07081 * 11 9 7 27 27 H 1.09001 * 110.48363 * 203.38136 * 12 11 9 28 28 H 1.08991 * 110.60085 * 80.79666 * 12 11 9 29 29 H 1.00900 * 110.99963 * 211.04038 * 15 13 12 30 30 H 1.09004 * 109.46593 * 299.99501 * 16 15 13 31 31 H 1.08996 * 109.47344 * 59.99656 * 16 15 13 32 32 H 1.08004 * 120.41921 * 0.02562 * 18 17 16 33 33 H 1.08000 * 119.62166 * 180.29370 * 19 18 17 34 34 H 1.08006 * 119.61086 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.41944 * 179.97438 * 22 21 20 36 36 H 1.09001 * 110.03862 * 119.28392 * 23 13 12 37 37 H 1.09001 * 110.03108 * 240.71710 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5032 2.6200 0.8027 6 1 3.5954 1.4121 0.5921 7 6 2.0046 -1.1941 -0.0005 8 1 3.0753 -1.1994 0.1403 9 6 1.2640 -2.4917 -0.1975 10 1 0.4888 -2.6062 0.5601 11 6 0.6478 -2.5540 -1.6173 12 6 0.4889 -4.0764 -1.8543 13 6 1.7473 -4.6930 -1.2094 14 1 2.5165 -4.8485 -1.9659 15 7 1.4090 -5.9697 -0.5664 16 6 1.4962 -7.0807 -1.5237 17 6 1.1425 -8.3708 -0.8296 18 6 2.1215 -9.1399 -0.2194 19 6 1.7589 -10.3146 0.4119 20 7 0.5011 -10.7108 0.4288 21 6 -0.4551 -10.0077 -0.1457 22 6 -0.1687 -8.8196 -0.7909 23 6 2.2401 -3.6855 -0.1560 24 1 -0.4849 0.8400 0.0004 25 1 1.3246 -2.1173 -2.3515 26 1 -0.3216 -2.0562 -1.6398 27 1 0.4610 -4.2954 -2.9217 28 1 -0.4115 -4.4486 -1.3658 29 1 1.9969 -6.1373 0.2364 30 1 0.8007 -6.9079 -2.3450 31 1 2.5116 -7.1445 -1.9147 32 1 3.1539 -8.8228 -0.2336 33 1 2.5147 -10.9170 0.8937 34 1 -1.4741 -10.3641 -0.1109 35 1 -0.9563 -8.2484 -1.2600 36 1 2.2281 -4.1433 0.8331 37 1 3.2484 -3.3520 -0.4013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393490781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:09 Heat of formation + Delta-G solvation = 1.728897 kcal Electronic energy + Delta-G solvation = -17066.829315 eV Core-core repulsion = 14421.224417 eV Total energy + Delta-G solvation = -2645.604898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05300 -39.37605 -36.35178 -34.44597 -32.76644 -32.07138 -29.90468 -28.77738 -26.33159 -25.23207 -24.32955 -22.64997 -21.18576 -20.62136 -18.54067 -17.63644 -17.30579 -16.64716 -16.51958 -16.42620 -15.76229 -15.50220 -14.91728 -14.53209 -14.43697 -14.15505 -13.94583 -13.43318 -13.16296 -13.04632 -12.62276 -12.38414 -12.34537 -11.99667 -11.82274 -11.54247 -11.39485 -11.03223 -10.80987 -10.57123 -10.42800 -10.39827 -10.03124 -9.32255 -8.11714 -6.19311 0.25760 0.30339 1.40831 1.42013 1.52063 2.44303 2.85440 3.19050 3.37333 3.63549 3.74462 3.88484 4.00282 4.10358 4.23253 4.27842 4.40419 4.52410 4.62318 4.75414 4.80069 4.84469 4.94779 4.97944 5.07485 5.09932 5.22519 5.29770 5.42552 5.45930 5.49251 5.66420 5.82737 5.92072 6.01151 6.17660 6.41418 6.47732 6.92604 7.06472 7.47274 8.98069 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.053067 B = 0.003885 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.504061 B = 7205.051826 C = 7343.025980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.041 3.959 10 H -0.005 1.005 11 C -0.098 4.098 12 C -0.104 4.104 13 C 0.098 3.902 14 H 0.054 0.946 15 N -0.683 5.683 16 C 0.098 3.902 17 C -0.044 4.044 18 C -0.169 4.169 19 C 0.087 3.913 20 N -0.515 5.515 21 C 0.085 3.915 22 C -0.160 4.160 23 C -0.109 4.109 24 H 0.259 0.741 25 H 0.039 0.961 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.343 0.657 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.151 0.849 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.143 0.857 36 H 0.054 0.946 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -17.705 -3.708 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.023 3.977 10 H 0.013 0.987 11 C -0.137 4.137 12 C -0.142 4.142 13 C -0.011 4.011 14 H 0.072 0.928 15 N -0.315 5.315 16 C -0.030 4.030 17 C -0.052 4.052 18 C -0.189 4.189 19 C -0.070 4.070 20 N -0.225 5.225 21 C -0.071 4.071 22 C -0.180 4.180 23 C -0.147 4.147 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.169 0.831 33 H 0.194 0.806 34 H 0.190 0.810 35 H 0.161 0.839 36 H 0.073 0.927 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.516 -18.287 -3.373 18.765 hybrid contribution 1.197 1.975 -0.336 2.333 sum 3.712 -16.312 -3.709 17.135 Atomic orbital electron populations 1.70118 1.07389 1.27140 1.51340 1.25767 0.95544 1.02455 0.94884 0.85662 0.78936 0.79690 0.78106 1.20106 1.21181 1.19091 1.21616 0.93836 0.92485 1.49219 0.92826 1.19365 0.93215 0.92198 0.92959 0.98719 1.22257 0.98794 0.94265 0.98358 1.22363 0.97783 0.94798 0.99245 1.22045 0.95722 0.88229 0.95120 0.92835 1.60636 1.60487 1.00865 1.09515 1.20961 1.00927 0.86652 0.94457 1.20382 0.93883 0.95297 0.95663 1.22306 1.01291 0.96226 0.99101 1.23148 0.93347 0.94604 0.95884 1.67692 1.02113 1.34384 1.18273 1.23111 0.99500 0.91453 0.93014 1.22252 0.97272 0.97663 1.00810 1.22306 0.99025 0.95769 0.97564 0.93167 0.94254 0.95032 0.91601 0.92207 0.83794 0.89739 0.92794 0.83090 0.80633 0.80964 0.83879 0.92709 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.65 12.71 21.45 0.27 -54.38 16 2 C 0.01 0.68 5.28 84.65 0.45 1.13 16 3 Si 0.95 43.87 29.55 68.60 2.03 45.90 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.53 -29.61 8.46 25.60 0.22 -29.40 16 8 H 0.05 2.90 7.57 -2.91 -0.02 2.88 16 9 C 0.04 2.09 2.66 -10.46 -0.03 2.06 16 10 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 11 C -0.10 -4.57 5.86 31.89 0.19 -4.38 16 12 C -0.10 -3.74 6.46 31.67 0.20 -3.53 16 13 C 0.10 3.15 3.24 45.63 0.15 3.30 16 14 H 0.05 1.56 7.82 -2.39 -0.02 1.55 16 15 N -0.68 -18.57 6.25 -491.82 -3.07 -21.65 16 16 C 0.10 2.11 5.69 85.56 0.49 2.59 16 17 C -0.04 -0.91 5.43 -19.67 -0.11 -1.01 16 18 C -0.17 -3.09 9.82 22.36 0.22 -2.87 16 19 C 0.09 1.65 11.18 84.68 0.95 2.59 16 20 N -0.51 -11.73 10.36 -195.84 -2.03 -13.76 16 21 C 0.09 1.75 11.18 84.68 0.95 2.69 16 22 C -0.16 -3.30 9.82 22.36 0.22 -3.08 16 23 C -0.11 -4.29 6.04 31.31 0.19 -4.10 16 24 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.04 1.84 8.05 -2.39 -0.02 1.82 16 26 H 0.03 1.62 7.81 -2.39 -0.02 1.60 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 29 H 0.34 8.90 8.02 -89.69 -0.72 8.18 16 30 H 0.08 1.80 8.08 -2.38 -0.02 1.79 16 31 H 0.05 1.02 8.03 -2.39 -0.02 1.00 16 32 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.05 2.07 7.48 -2.39 -0.02 2.05 16 37 H 0.05 2.16 7.67 -2.39 -0.02 2.15 16 Total: -1.00 -64.25 306.72 1.60 -62.66 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.33 Total: 15.22 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 4.08 Total: -33.99 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -4.83 Total: -89.78 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.25 1.60 -62.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393490781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.384 kcal (2) G-P(sol) polarization free energy of solvation -64.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds