Wall clock time and date at job start Mon Mar 30 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86789 * 120.00025 * 2 1 4 4 H 1.48503 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47416 * 300.00123 * 3 2 1 6 6 H 1.48506 * 109.46992 * 60.00229 * 3 2 1 7 7 C 1.37878 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00124 * 185.36296 * 7 2 1 9 9 C 1.50705 * 119.99899 * 5.36086 * 7 2 1 10 10 H 1.09000 * 109.47388 * 354.92585 * 9 7 2 11 11 C 1.50699 * 109.47050 * 114.92966 * 9 7 2 12 12 C 1.38236 * 120.00126 * 73.56978 * 11 9 7 13 13 C 1.38232 * 119.99846 * 179.78635 * 12 11 9 14 14 C 1.38237 * 120.00278 * 0.44600 * 13 12 11 15 15 C 1.38243 * 119.99885 * 359.80839 * 14 13 12 16 16 C 1.38234 * 119.99460 * 359.97438 * 15 14 13 17 17 N 1.46905 * 109.47096 * 234.92616 * 9 7 2 18 18 C 1.46906 * 111.00214 * 179.97438 * 17 9 7 19 19 C 1.53121 * 109.33810 * 175.92156 * 18 17 9 20 20 C 1.53168 * 109.10923 * 57.70981 * 19 18 17 21 21 C 1.53122 * 109.11263 * 303.32457 * 20 19 18 22 22 N 1.45350 * 110.99900 * 55.88767 * 17 9 7 23 23 H 0.96998 * 120.00065 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.00087 * 359.97438 * 12 11 9 25 25 H 1.07999 * 120.00266 * 180.27250 * 13 12 11 26 26 H 1.08001 * 120.00325 * 179.83446 * 14 13 12 27 27 H 1.07996 * 120.00241 * 180.02562 * 15 14 13 28 28 H 1.08009 * 119.99823 * 180.02562 * 16 15 14 29 29 H 1.09003 * 109.49375 * 55.96530 * 18 17 9 30 30 H 1.09002 * 109.49513 * 295.88725 * 18 17 9 31 31 H 1.08996 * 109.53089 * 297.82036 * 19 18 17 32 32 H 1.08996 * 109.53104 * 177.59680 * 19 18 17 33 33 H 1.08997 * 109.53076 * 63.21549 * 20 19 18 34 34 H 1.09002 * 109.52841 * 183.44107 * 20 19 18 35 35 H 1.08996 * 109.49644 * 177.66199 * 21 20 19 36 36 H 1.08995 * 109.49652 * 297.75200 * 21 20 19 37 37 H 1.00904 * 111.00198 * 62.07313 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0809 -1.1962 0.0869 9 6 1.2559 -2.4963 -0.1231 10 1 0.1835 -2.3015 -0.1097 11 6 1.6281 -3.1697 -1.4188 12 6 2.8674 -3.7664 -1.5566 13 6 3.2071 -4.3879 -2.7437 14 6 2.3110 -4.4048 -3.7962 15 6 1.0737 -3.8035 -3.6602 16 6 0.7323 -3.1859 -2.4716 17 7 1.6086 -3.3717 1.0027 18 6 0.8955 -4.6532 0.9167 19 6 1.3661 -5.5722 2.0474 20 6 1.1204 -4.8798 3.3914 21 6 1.8382 -3.5273 3.3971 22 7 1.3525 -2.7146 2.2736 23 1 -0.4850 0.8400 -0.0004 24 1 3.5690 -3.7496 -0.7358 25 1 4.1736 -4.8579 -2.8499 26 1 2.5774 -4.8880 -4.7246 27 1 0.3734 -3.8170 -4.4823 28 1 -0.2346 -2.7164 -2.3651 29 1 1.1054 -5.1225 -0.0445 30 1 -0.1765 -4.4800 1.0109 31 1 2.4305 -5.7765 1.9319 32 1 0.8084 -6.5080 2.0124 33 1 0.0506 -4.7251 3.5315 34 1 1.5086 -5.5017 4.1980 35 1 1.6334 -3.0107 4.3348 36 1 2.9119 -3.6848 3.2951 37 1 0.3721 -2.5005 2.3790 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400318793.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:36 Heat of formation + Delta-G solvation = 38.318051 kcal Electronic energy + Delta-G solvation = -18315.348179 eV Core-core repulsion = 15671.329906 eV Total energy + Delta-G solvation = -2644.018273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34907 -39.02140 -35.71537 -33.71761 -32.53467 -31.60677 -31.36920 -28.56037 -25.98802 -24.25105 -23.93733 -23.14794 -21.48798 -20.93723 -18.42963 -17.54651 -17.15486 -16.32138 -16.22127 -15.83433 -15.42417 -15.19346 -15.05999 -14.64530 -14.12611 -14.04702 -13.81864 -13.65291 -13.20434 -12.87424 -12.81359 -12.63307 -12.24818 -12.06821 -11.89834 -11.72869 -11.49121 -11.37354 -11.18093 -10.57494 -9.61100 -9.42281 -9.28473 -8.99289 -8.06144 -6.10457 0.70325 0.74718 1.41360 1.43471 1.55005 2.46027 2.77519 3.13365 3.30184 3.88952 3.96117 4.06820 4.21443 4.26686 4.31175 4.39326 4.44344 4.58242 4.68807 4.81943 4.87882 4.89057 4.93196 5.01691 5.11852 5.13730 5.25319 5.35954 5.40680 5.43254 5.77191 5.78578 5.82163 5.98774 6.13559 6.31508 6.39445 6.68441 6.88742 7.17906 7.52579 8.99974 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.012384 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.819056 B = 2260.441381 C = 3845.263806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.463 4.463 8 H 0.044 0.956 9 C 0.231 3.769 10 H 0.012 0.988 11 C -0.051 4.051 12 C -0.114 4.114 13 C -0.125 4.125 14 C -0.139 4.139 15 C -0.124 4.124 16 C -0.148 4.148 17 N -0.349 5.349 18 C 0.008 3.992 19 C -0.106 4.106 20 C -0.150 4.150 21 C 0.058 3.942 22 N -0.504 5.504 23 H 0.259 0.741 24 H 0.111 0.889 25 H 0.142 0.858 26 H 0.148 0.852 27 H 0.137 0.863 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -10.765 -0.143 11.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.176 4.176 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.125 3.875 10 H 0.030 0.970 11 C -0.053 4.053 12 C -0.133 4.133 13 C -0.143 4.143 14 C -0.157 4.157 15 C -0.142 4.142 16 C -0.167 4.167 17 N -0.166 5.166 18 C -0.121 4.121 19 C -0.144 4.144 20 C -0.189 4.189 21 C -0.072 4.072 22 N -0.223 5.223 23 H 0.068 0.932 24 H 0.129 0.871 25 H 0.160 0.840 26 H 0.166 0.834 27 H 0.155 0.845 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.023 0.977 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.659 -10.334 -0.172 10.964 hybrid contribution -1.680 0.754 0.190 1.851 sum 1.979 -9.580 0.018 9.782 Atomic orbital electron populations 1.70003 1.07035 1.26946 1.52654 1.25539 0.95487 1.01971 0.94586 0.85613 0.79176 0.80211 0.77211 1.19479 1.20992 1.20870 1.20812 0.92591 0.89785 1.46995 0.93788 1.18379 0.95074 0.89901 0.84148 0.97003 1.20269 0.94450 0.94055 0.96486 1.20985 0.95837 0.98376 0.98092 1.21411 1.00352 0.99641 0.92904 1.21319 0.93696 1.01094 0.99625 1.21274 0.97913 0.98286 0.96696 1.21067 0.99327 1.01418 0.94853 1.66328 1.51868 1.00698 0.97685 1.22812 0.94764 0.94270 1.00302 1.21543 1.01961 0.97465 0.93395 1.22212 1.00192 0.98397 0.98097 1.22261 1.00215 0.91926 0.92820 1.64448 1.20759 1.39879 0.97234 0.93205 0.87093 0.84017 0.83382 0.84528 0.88787 0.91298 0.97703 0.91172 0.90404 0.93019 0.89047 0.89603 0.90905 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.02 12.62 21.45 0.27 -53.75 16 2 C 0.02 1.28 5.45 84.65 0.46 1.74 16 3 Si 0.95 45.37 29.54 68.60 2.03 47.40 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.46 -25.82 7.83 25.60 0.20 -25.62 16 8 H 0.04 2.55 7.82 -2.91 -0.02 2.52 16 9 C 0.23 11.71 2.19 43.42 0.10 11.81 16 10 H 0.01 0.70 6.72 -2.39 -0.02 0.68 16 11 C -0.05 -2.28 3.53 -19.87 -0.07 -2.35 16 12 C -0.11 -4.58 8.79 22.27 0.20 -4.38 16 13 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 14 C -0.14 -4.15 10.05 22.27 0.22 -3.92 16 15 C -0.12 -4.17 10.05 22.27 0.22 -3.95 16 16 C -0.15 -6.27 9.67 22.27 0.22 -6.05 16 17 N -0.35 -15.41 4.38 -499.10 -2.18 -17.60 16 18 C 0.01 0.32 5.39 86.34 0.47 0.78 16 19 C -0.11 -3.10 6.13 30.69 0.19 -2.91 16 20 C -0.15 -4.07 6.12 30.69 0.19 -3.88 16 21 C 0.06 1.89 6.79 86.34 0.59 2.47 16 22 N -0.50 -21.79 6.16 -186.51 -1.15 -22.94 16 23 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 24 H 0.11 4.59 7.92 -2.91 -0.02 4.57 16 25 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 26 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 27 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 28 H 0.09 4.25 7.99 -2.91 -0.02 4.23 16 29 H 0.07 2.66 6.63 -2.39 -0.02 2.64 16 30 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.30 13.47 8.95 -204.88 -1.83 11.64 16 Total: -1.00 -62.71 301.56 1.37 -61.34 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.79 Total: 25.62 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 3.20 Total: -40.07 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -3.06 Total: -94.29 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -62.71 1.37 -61.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400318793.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.656 kcal (2) G-P(sol) polarization free energy of solvation -62.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds