Wall clock time and date at job start Mon Mar 30 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99823 * 2 1 4 4 H 1.48498 * 109.47509 * 270.00308 * 3 2 1 5 5 H 1.48494 * 109.47077 * 30.00636 * 3 2 1 6 6 H 1.48500 * 109.46606 * 150.00392 * 3 2 1 7 7 C 1.37873 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00108 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00055 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47007 * 185.00789 * 9 7 2 11 11 C 1.46854 * 111.00035 * 59.32225 * 10 9 7 12 12 C 1.53034 * 109.52429 * 174.15849 * 11 10 9 13 13 C 1.53116 * 109.27894 * 59.17668 * 12 11 10 14 14 C 1.53119 * 109.16285 * 302.34795 * 13 12 11 15 15 H 1.09005 * 109.53456 * 297.69237 * 14 13 12 16 16 C 1.50699 * 109.50405 * 177.59578 * 14 13 12 17 17 C 1.38221 * 119.61871 * 325.19502 * 16 14 13 18 18 C 1.38636 * 119.16140 * 180.27767 * 17 16 14 19 19 C 1.38669 * 118.41845 * 359.48304 * 18 17 16 20 20 C 1.38184 * 119.16152 * 0.51762 * 19 18 17 21 21 N 1.31856 * 119.61962 * 145.21610 * 16 14 13 22 22 C 1.46846 * 111.00431 * 295.10957 * 10 9 7 23 23 H 0.97009 * 120.00005 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46863 * 65.01018 * 9 7 2 25 25 H 1.08998 * 109.47133 * 305.00978 * 9 7 2 26 26 H 1.08994 * 109.46160 * 294.17442 * 11 10 9 27 27 H 1.09004 * 109.46176 * 54.15365 * 11 10 9 28 28 H 1.08999 * 109.50692 * 179.12473 * 12 11 10 29 29 H 1.09013 * 109.50379 * 299.23697 * 12 11 10 30 30 H 1.08999 * 109.52247 * 182.44249 * 13 12 11 31 31 H 1.09000 * 109.52017 * 62.25133 * 13 12 11 32 32 H 1.08003 * 120.41756 * 0.02562 * 17 16 14 33 33 H 1.07996 * 120.78791 * 179.72341 * 18 17 16 34 34 H 1.08000 * 120.41648 * 180.21910 * 19 18 17 35 35 H 1.08006 * 119.61297 * 179.72481 * 20 19 18 36 36 H 1.08998 * 109.45848 * 65.82509 * 22 10 9 37 37 H 1.09001 * 109.44894 * 305.85402 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2011 -3.6130 0.1197 11 6 2.9837 -3.5059 1.3578 12 6 3.8553 -4.7531 1.5214 13 6 4.7891 -4.8791 0.3145 14 6 3.9508 -4.9402 -0.9654 15 1 3.3162 -5.8262 -0.9435 16 6 4.8640 -5.0049 -2.1624 17 6 6.0659 -4.3225 -2.1424 18 6 6.8961 -4.3839 -3.2510 19 6 6.4894 -5.1416 -4.3389 20 6 5.2739 -5.7968 -4.2865 21 7 4.5071 -5.7115 -3.2169 22 6 3.0764 -3.6876 -1.0570 23 1 -0.4850 0.8401 0.0004 24 1 0.6930 -2.5965 -0.9318 25 1 0.5591 -2.5192 0.8414 26 1 3.6197 -2.6220 1.3100 27 1 2.3076 -3.4213 2.2086 28 1 4.4475 -4.6662 2.4323 29 1 3.2191 -5.6362 1.5831 30 1 5.3814 -5.7896 0.4058 31 1 5.4518 -4.0147 0.2749 32 1 6.3527 -3.7455 -1.2756 33 1 7.8389 -3.8574 -3.2654 34 1 7.1126 -5.2147 -5.2179 35 1 4.9480 -6.3853 -5.1314 36 1 3.7120 -2.8029 -1.0934 37 1 2.4675 -3.7349 -1.9598 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595500432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:56 Heat of formation + Delta-G solvation = 26.185922 kcal Electronic energy + Delta-G solvation = -17815.628071 eV Core-core repulsion = 15171.083710 eV Total energy + Delta-G solvation = -2644.544362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29692 -38.09098 -34.08749 -32.52554 -32.21992 -31.31075 -28.97766 -26.72903 -24.16674 -23.64647 -23.35750 -21.63506 -20.73050 -19.06017 -16.84628 -16.38650 -16.04402 -15.47377 -14.85914 -14.42139 -14.28271 -13.94191 -13.62352 -13.24637 -13.06862 -12.69538 -12.63706 -12.08759 -11.67878 -11.53639 -11.09620 -10.95987 -10.78548 -10.45763 -10.36247 -10.11793 -9.90555 -9.79594 -9.77970 -9.52752 -9.24418 -8.79273 -8.42502 -7.14460 -6.01688 -4.11034 1.19704 1.36029 3.26552 3.33504 3.35617 3.88445 4.32226 4.40363 4.80421 4.86265 5.09617 5.12361 5.20974 5.28237 5.34321 5.40179 5.42964 5.72153 5.80295 5.92511 6.01712 6.03855 6.15638 6.23251 6.29448 6.32409 6.45113 6.57182 6.73409 6.77198 6.81154 6.92713 7.32401 7.54041 7.91081 8.08787 8.13880 8.30980 8.33906 8.99453 9.55577 11.03145 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.006381 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.428932 B = 4386.714043 C = 4911.065520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.187 3.813 10 N -0.540 5.540 11 C 0.062 3.938 12 C -0.116 4.116 13 C -0.110 4.110 14 C -0.040 4.040 15 H 0.093 0.907 16 C 0.151 3.849 17 C -0.169 4.169 18 C -0.076 4.076 19 C -0.188 4.188 20 C 0.099 3.901 21 N -0.482 5.482 22 C 0.081 3.919 23 H 0.262 0.738 24 H 0.027 0.973 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.036 0.964 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.973 -9.791 -3.794 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.066 4.066 12 C -0.154 4.154 13 C -0.148 4.148 14 C -0.060 4.060 15 H 0.111 0.889 16 C 0.013 3.987 17 C -0.189 4.189 18 C -0.102 4.102 19 C -0.208 4.208 20 C -0.059 4.059 21 N -0.191 5.191 22 C -0.049 4.049 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.055 0.945 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.723 -10.547 -3.755 16.210 hybrid contribution 1.793 2.347 -0.254 2.965 sum 13.516 -8.200 -4.010 16.310 Atomic orbital electron populations 1.69943 1.05988 1.26790 1.50173 1.24957 0.94756 0.99079 0.94975 0.86670 0.79921 0.83769 0.78119 1.20686 1.21083 1.19989 1.21752 0.93283 0.92150 1.51599 0.92581 1.19750 0.90841 0.85352 0.97877 1.62398 1.17112 1.46376 1.00485 1.21872 0.95763 0.95247 0.93741 1.21631 0.97573 0.99750 0.96486 1.21662 0.97640 1.01112 0.94396 1.20238 0.94986 1.01503 0.89263 0.88905 1.21378 0.92613 0.90987 0.93749 1.22077 0.95742 1.01289 0.99815 1.21564 0.99306 0.96404 0.92924 1.22066 0.98743 1.00233 0.99740 1.22734 0.90702 0.96595 0.95822 1.67538 1.33712 1.17657 1.00181 1.21763 0.94536 0.93687 0.94880 0.92810 0.95449 0.94571 0.94353 0.91594 0.92241 0.91624 0.92477 0.92040 0.84636 0.85161 0.85221 0.83045 0.94540 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.55 -15.16 7.72 -34.44 -0.27 -15.42 16 8 H 0.06 1.53 5.86 -52.49 -0.31 1.23 16 9 C 0.19 4.90 5.12 -4.98 -0.03 4.87 16 10 N -0.54 -11.78 4.86 -236.12 -1.15 -12.92 16 11 C 0.06 1.21 5.03 -3.83 -0.02 1.19 16 12 C -0.12 -1.77 6.09 -26.65 -0.16 -1.94 16 13 C -0.11 -1.59 4.77 -26.61 -0.13 -1.72 16 14 C -0.04 -0.67 2.67 -91.69 -0.24 -0.91 16 15 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 16 C 0.15 2.36 5.79 -82.59 -0.48 1.88 16 17 C -0.17 -2.31 9.18 -39.44 -0.36 -2.67 16 18 C -0.08 -0.87 10.18 -39.28 -0.40 -1.27 16 19 C -0.19 -2.05 10.11 -39.44 -0.40 -2.45 16 20 C 0.10 1.25 11.18 -17.55 -0.20 1.05 16 21 N -0.48 -7.64 10.27 -9.48 -0.10 -7.74 16 22 C 0.08 1.63 4.38 -3.84 -0.02 1.61 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.80 6.73 -51.93 -0.35 0.46 16 27 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.86 6.37 -51.93 -0.33 0.53 16 32 H 0.14 1.70 6.26 -52.48 -0.33 1.37 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.04 0.79 6.86 -51.93 -0.36 0.43 16 37 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -30.42 296.52 -9.31 -39.73 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.45 Total: -0.35 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.79 Total: -14.04 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.51 Total: -46.30 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.42 -9.31 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595500432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.912 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds