Wall clock time and date at job start Mon Mar 30 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00087 * 2 1 4 4 H 1.48498 * 109.46936 * 266.93061 * 3 2 1 5 5 H 1.48497 * 109.47107 * 26.93369 * 3 2 1 6 6 H 1.48501 * 109.47009 * 146.93129 * 3 2 1 7 7 C 1.37877 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00271 * 356.49743 * 7 2 1 9 9 C 1.50701 * 119.99833 * 176.48896 * 7 2 1 10 10 H 1.09001 * 109.47113 * 31.01237 * 9 7 2 11 11 N 1.46910 * 109.47003 * 151.01180 * 9 7 2 12 12 N 1.45402 * 110.99778 * 265.44409 * 11 9 7 13 13 C 1.48534 * 111.00131 * 9.13856 * 12 11 9 14 14 C 1.54938 * 103.22836 * 159.72305 * 13 12 11 15 15 C 1.54597 * 102.91536 * 322.58394 * 14 13 12 16 16 C 1.47900 * 110.99902 * 126.53294 * 12 11 9 17 17 C 1.50700 * 109.47437 * 271.01039 * 9 7 2 18 18 C 1.38230 * 120.00144 * 286.90812 * 17 9 7 19 19 C 1.38240 * 120.00512 * 180.02562 * 18 17 9 20 20 C 1.38236 * 119.99298 * 0.07225 * 19 18 17 21 21 C 1.38231 * 120.00353 * 359.97438 * 20 19 18 22 22 C 1.38228 * 119.99853 * 107.03780 * 17 9 7 23 23 H 0.96996 * 119.99629 * 0.02562 * 1 2 3 24 24 H 1.00895 * 110.99683 * 141.49295 * 11 9 7 25 25 H 1.08999 * 110.66504 * 278.15710 * 13 12 11 26 26 H 1.09001 * 110.67076 * 41.28127 * 13 12 11 27 27 H 1.08997 * 110.72246 * 204.22966 * 14 13 12 28 28 H 1.08998 * 110.72389 * 80.94173 * 14 13 12 29 29 H 1.09004 * 110.30988 * 263.04023 * 15 14 13 30 30 H 1.09003 * 110.30422 * 140.87828 * 15 14 13 31 31 H 1.08998 * 109.91485 * 333.50890 * 16 12 11 32 32 H 1.09000 * 109.91296 * 94.60357 * 16 12 11 33 33 H 1.08004 * 120.00010 * 0.10610 * 18 17 9 34 34 H 1.07990 * 120.00079 * 180.34168 * 19 18 17 35 35 H 1.07997 * 119.99456 * 179.97438 * 20 19 18 36 36 H 1.07999 * 120.00189 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00266 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5616 2.0089 -1.3981 5 1 1.4157 2.6705 0.6342 6 1 3.5128 1.4597 0.7640 7 6 2.0045 -1.1941 0.0005 8 1 1.4660 -2.1285 0.0581 9 6 3.5094 -1.1953 -0.0794 10 1 3.8996 -0.2989 0.4025 11 7 4.0349 -2.3859 0.6023 12 7 4.3841 -2.0851 1.9813 13 6 3.9096 -0.7316 2.3675 14 6 3.8801 -0.7945 3.9153 15 6 3.3948 -2.2358 4.1933 16 6 3.7231 -3.0250 2.9125 17 6 3.9357 -1.2149 -1.5247 18 6 3.7972 -2.3703 -2.2706 19 6 4.1887 -2.3885 -3.5963 20 6 4.7202 -1.2514 -4.1755 21 6 4.8597 -0.0962 -3.4293 22 6 4.4678 -0.0780 -2.1037 23 1 -0.4849 0.8400 -0.0004 24 1 4.8248 -2.7684 0.1044 25 1 4.6081 0.0326 2.0268 26 1 2.9114 -0.5461 1.9708 27 1 3.1760 -0.0661 4.3176 28 1 4.8770 -0.6370 4.3268 29 1 2.3205 -2.2443 4.3780 30 1 3.9291 -2.6572 5.0449 31 1 2.8050 -3.4063 2.4656 32 1 4.3945 -3.8518 3.1441 33 1 3.3818 -3.2587 -1.8181 34 1 4.0753 -3.2896 -4.1805 35 1 5.0265 -1.2656 -5.2110 36 1 5.2753 0.7921 -3.8817 37 1 4.5776 0.8243 -1.5205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686774045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:43 Heat of formation + Delta-G solvation = 71.596289 kcal Electronic energy + Delta-G solvation = -18358.684364 eV Core-core repulsion = 15716.109144 eV Total energy + Delta-G solvation = -2642.575220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.97909 -37.86034 -34.47842 -32.27675 -30.67957 -30.25483 -28.56302 -27.42122 -26.16449 -22.65609 -21.91402 -21.05331 -20.16873 -19.16831 -17.08219 -16.51433 -15.83001 -15.36920 -14.71320 -14.52701 -14.16833 -13.57488 -13.18058 -12.87658 -12.81133 -12.46071 -12.26079 -11.97499 -11.81830 -11.47201 -11.01764 -10.93312 -10.84776 -10.50477 -10.45772 -10.26808 -10.14234 -9.75652 -9.70411 -8.80130 -8.57261 -8.27881 -7.96377 -7.03371 -6.22346 -4.18991 2.02105 2.07107 3.15106 3.20087 3.25737 4.23220 4.27601 4.48439 5.04656 5.10384 5.21917 5.41666 5.47398 5.50345 5.63093 5.84459 5.95039 5.97981 6.04856 6.18343 6.20863 6.25490 6.31747 6.43654 6.47522 6.53496 6.64293 6.68793 6.75260 6.85671 7.06540 7.10570 7.26681 7.41876 7.48723 7.69175 8.01767 8.32219 8.54877 8.90680 9.38108 10.89631 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.009954 C = 0.007964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.496955 B = 2812.166484 C = 3514.788977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.853 3.147 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.485 4.485 8 H 0.083 0.917 9 C 0.185 3.815 10 H 0.046 0.954 11 N -0.527 5.527 12 N -0.361 5.361 13 C -0.001 4.001 14 C -0.123 4.123 15 C -0.128 4.128 16 C 0.045 3.955 17 C -0.051 4.051 18 C -0.100 4.100 19 C -0.125 4.125 20 C -0.145 4.145 21 C -0.123 4.123 22 C -0.134 4.134 23 H 0.266 0.734 24 H 0.333 0.667 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.893 -1.642 0.901 9.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.127 4.127 3 Si 0.681 3.319 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.183 1.183 7 C -0.523 4.523 8 H 0.101 0.899 9 C 0.076 3.924 10 H 0.063 0.937 11 N -0.249 5.249 12 N -0.175 5.175 13 C -0.129 4.129 14 C -0.162 4.162 15 C -0.167 4.167 16 C -0.084 4.084 17 C -0.053 4.053 18 C -0.119 4.119 19 C -0.143 4.143 20 C -0.164 4.164 21 C -0.141 4.141 22 C -0.153 4.153 23 H 0.076 0.924 24 H 0.151 0.849 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.659 -1.828 1.106 8.919 hybrid contribution 0.148 1.684 -0.445 1.748 sum 8.807 -0.144 0.661 8.833 Atomic orbital electron populations 1.69868 1.06046 1.27064 1.49515 1.24953 0.94713 0.98554 0.94485 0.87290 0.80568 0.84630 0.79432 1.19342 1.21267 1.18349 1.20877 0.87538 0.94785 1.49072 0.89878 1.19380 0.96730 0.90230 0.86055 0.93651 1.63944 1.33926 1.30578 0.96421 1.68045 1.49818 1.02102 0.97523 1.23892 1.02941 0.91791 0.94273 1.22434 1.00723 0.96784 0.96298 1.22374 1.01005 0.95620 0.97719 1.22728 0.98680 0.95498 0.91474 1.20760 0.92602 0.92801 0.99174 1.20980 0.98857 0.98627 0.93421 1.21078 0.99898 0.97846 0.95449 1.20887 1.02632 0.93713 0.99127 1.20941 1.01089 0.97700 0.94369 1.20997 1.00761 0.98110 0.95439 0.92379 0.84931 0.91545 0.88121 0.91489 0.91770 0.91562 0.91911 0.91892 0.91586 0.85721 0.86946 0.87201 0.87197 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 2 C 0.08 2.11 5.19 -17.82 -0.09 2.02 16 3 Si 0.85 20.49 24.08 -169.99 -4.09 16.40 16 4 H -0.27 -6.41 7.07 56.52 0.40 -6.01 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -5.78 5.27 56.52 0.30 -5.48 16 7 C -0.48 -12.97 7.70 -34.44 -0.27 -13.24 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.18 4.20 1.43 -70.01 -0.10 4.10 16 10 H 0.05 1.07 2.31 -51.93 -0.12 0.95 16 11 N -0.53 -10.95 6.38 -6.64 -0.04 -10.99 16 12 N -0.36 -7.05 6.18 -110.09 -0.68 -7.73 16 13 C 0.00 -0.02 4.59 -1.90 -0.01 -0.03 16 14 C -0.12 -2.01 7.06 -24.87 -0.18 -2.19 16 15 C -0.13 -1.98 6.93 -25.38 -0.18 -2.16 16 16 C 0.05 0.79 6.97 -2.76 -0.02 0.77 16 17 C -0.05 -1.10 4.53 -104.63 -0.47 -1.57 16 18 C -0.10 -1.97 8.89 -39.58 -0.35 -2.32 16 19 C -0.12 -2.13 10.05 -39.58 -0.40 -2.53 16 20 C -0.15 -2.39 10.05 -39.58 -0.40 -2.79 16 21 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 22 C -0.13 -2.73 8.75 -39.58 -0.35 -3.08 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.33 6.43 8.07 -174.66 -1.41 5.02 16 25 H 0.07 1.33 6.88 -51.93 -0.36 0.98 16 26 H 0.10 2.35 4.16 -51.93 -0.22 2.13 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.24 8.00 -51.93 -0.42 0.82 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.12 2.43 7.93 -52.48 -0.42 2.01 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.11 2.14 6.37 -52.49 -0.33 1.81 16 LS Contribution 287.20 15.07 4.33 4.33 Total: -1.00 -28.76 287.20 -9.23 -37.99 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.32 Total: 11.05 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -3.20 Total: -25.58 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.05 Total: -44.19 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.09 Total: 16.40 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.76 -9.23 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686774045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.589 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds