Wall clock time and date at job start Mon Mar 30 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00087 * 2 1 4 4 H 1.48498 * 109.46936 * 266.93061 * 3 2 1 5 5 H 1.48497 * 109.47107 * 26.93369 * 3 2 1 6 6 H 1.48501 * 109.47009 * 146.93129 * 3 2 1 7 7 C 1.37877 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00271 * 356.49743 * 7 2 1 9 9 C 1.50701 * 119.99833 * 176.48896 * 7 2 1 10 10 H 1.09001 * 109.47113 * 31.01237 * 9 7 2 11 11 N 1.46910 * 109.47003 * 151.01180 * 9 7 2 12 12 N 1.45402 * 110.99778 * 265.44409 * 11 9 7 13 13 C 1.48534 * 111.00131 * 9.13856 * 12 11 9 14 14 C 1.54938 * 103.22836 * 159.72305 * 13 12 11 15 15 C 1.54597 * 102.91536 * 322.58394 * 14 13 12 16 16 C 1.47900 * 110.99902 * 126.53294 * 12 11 9 17 17 C 1.50700 * 109.47437 * 271.01039 * 9 7 2 18 18 C 1.38230 * 120.00144 * 286.90812 * 17 9 7 19 19 C 1.38240 * 120.00512 * 180.02562 * 18 17 9 20 20 C 1.38236 * 119.99298 * 0.07225 * 19 18 17 21 21 C 1.38231 * 120.00353 * 359.97438 * 20 19 18 22 22 C 1.38228 * 119.99853 * 107.03780 * 17 9 7 23 23 H 0.96996 * 119.99629 * 0.02562 * 1 2 3 24 24 H 1.00895 * 110.99683 * 141.49295 * 11 9 7 25 25 H 1.08999 * 110.66504 * 278.15710 * 13 12 11 26 26 H 1.09001 * 110.67076 * 41.28127 * 13 12 11 27 27 H 1.08997 * 110.72246 * 204.22966 * 14 13 12 28 28 H 1.08998 * 110.72389 * 80.94173 * 14 13 12 29 29 H 1.09004 * 110.30988 * 263.04023 * 15 14 13 30 30 H 1.09003 * 110.30422 * 140.87828 * 15 14 13 31 31 H 1.08998 * 109.91485 * 333.50890 * 16 12 11 32 32 H 1.09000 * 109.91296 * 94.60357 * 16 12 11 33 33 H 1.08004 * 120.00010 * 0.10610 * 18 17 9 34 34 H 1.07990 * 120.00079 * 180.34168 * 19 18 17 35 35 H 1.07997 * 119.99456 * 179.97438 * 20 19 18 36 36 H 1.07999 * 120.00189 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00266 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5616 2.0089 -1.3981 5 1 1.4157 2.6705 0.6342 6 1 3.5128 1.4597 0.7640 7 6 2.0045 -1.1941 0.0005 8 1 1.4660 -2.1285 0.0581 9 6 3.5094 -1.1953 -0.0794 10 1 3.8996 -0.2989 0.4025 11 7 4.0349 -2.3859 0.6023 12 7 4.3841 -2.0851 1.9813 13 6 3.9096 -0.7316 2.3675 14 6 3.8801 -0.7945 3.9153 15 6 3.3948 -2.2358 4.1933 16 6 3.7231 -3.0250 2.9125 17 6 3.9357 -1.2149 -1.5247 18 6 3.7972 -2.3703 -2.2706 19 6 4.1887 -2.3885 -3.5963 20 6 4.7202 -1.2514 -4.1755 21 6 4.8597 -0.0962 -3.4293 22 6 4.4678 -0.0780 -2.1037 23 1 -0.4849 0.8400 -0.0004 24 1 4.8248 -2.7684 0.1044 25 1 4.6081 0.0326 2.0268 26 1 2.9114 -0.5461 1.9708 27 1 3.1760 -0.0661 4.3176 28 1 4.8770 -0.6370 4.3268 29 1 2.3205 -2.2443 4.3780 30 1 3.9291 -2.6572 5.0449 31 1 2.8050 -3.4063 2.4656 32 1 4.3945 -3.8518 3.1441 33 1 3.3818 -3.2587 -1.8181 34 1 4.0753 -3.2896 -4.1805 35 1 5.0265 -1.2656 -5.2110 36 1 5.2753 0.7921 -3.8817 37 1 4.5776 0.8243 -1.5205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686774045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:43 Heat of formation + Delta-G solvation = 52.281594 kcal Electronic energy + Delta-G solvation = -18359.521913 eV Core-core repulsion = 15716.109144 eV Total energy + Delta-G solvation = -2643.412768 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51662 -39.31651 -36.12094 -34.26150 -32.19677 -31.68462 -30.07487 -28.99836 -27.94279 -24.38394 -23.36034 -22.54819 -21.55805 -20.83474 -19.01927 -18.10202 -17.32489 -16.86188 -16.45998 -16.17765 -15.65979 -15.11763 -14.80090 -14.65799 -14.26183 -14.09377 -13.79538 -13.42963 -13.31693 -12.96129 -12.84789 -12.59227 -12.21949 -12.14712 -12.06658 -11.82773 -11.68073 -11.61909 -11.23454 -10.83797 -10.30094 -9.71901 -9.46927 -8.70436 -8.35553 -6.35310 0.57116 0.62413 1.22573 1.24941 1.31369 2.23130 2.69814 2.91017 3.10946 3.63295 3.86551 4.07410 4.12047 4.18326 4.26165 4.36135 4.42968 4.54364 4.62824 4.73621 4.76767 4.83487 4.89689 4.96236 5.06947 5.11021 5.17776 5.22280 5.27113 5.39545 5.46942 5.65254 5.69155 5.80910 5.89712 6.09320 6.24490 6.61536 6.68766 6.77426 7.26205 8.80587 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.009954 C = 0.007964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.496955 B = 2812.166484 C = 3514.788977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.026 3.974 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.475 4.475 8 H 0.032 0.968 9 C 0.197 3.803 10 H 0.043 0.957 11 N -0.536 5.536 12 N -0.358 5.358 13 C -0.007 4.007 14 C -0.117 4.117 15 C -0.123 4.123 16 C 0.042 3.958 17 C -0.080 4.080 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.155 4.155 23 H 0.266 0.734 24 H 0.342 0.658 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.554 -1.152 0.232 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.173 4.173 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.161 1.161 7 C -0.513 4.513 8 H 0.050 0.950 9 C 0.088 3.912 10 H 0.060 0.940 11 N -0.258 5.258 12 N -0.173 5.173 13 C -0.136 4.136 14 C -0.156 4.156 15 C -0.161 4.161 16 C -0.087 4.087 17 C -0.082 4.082 18 C -0.136 4.136 19 C -0.139 4.139 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.174 4.174 23 H 0.075 0.925 24 H 0.160 0.840 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.352 -1.359 0.437 11.442 hybrid contribution -0.635 1.376 -0.301 1.545 sum 10.717 0.018 0.136 10.718 Atomic orbital electron populations 1.70019 1.07889 1.27835 1.52352 1.25629 0.95251 1.02000 0.94405 0.86379 0.80086 0.80168 0.79889 1.18697 1.21439 1.16107 1.20900 0.89865 0.92614 1.47955 0.95003 1.19059 0.93882 0.90601 0.87640 0.94001 1.63811 1.34629 1.30062 0.97301 1.68092 1.49837 1.02434 0.96904 1.23847 1.00559 0.91970 0.97179 1.22464 1.02484 0.97427 0.93252 1.22383 1.01153 0.94973 0.97640 1.22848 0.97709 0.96167 0.91958 1.20637 0.95090 0.94307 0.98174 1.21029 0.99812 0.97870 0.94924 1.21448 0.98478 0.99613 0.94341 1.21384 1.00494 0.92547 1.00821 1.21342 1.00042 0.99472 0.93244 1.21135 1.01819 0.97448 0.96989 0.92515 0.83956 0.91754 0.91892 0.90740 0.89255 0.92261 0.88330 0.95079 0.89172 0.86879 0.83810 0.83079 0.84052 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 2 C 0.03 1.47 5.19 84.65 0.44 1.91 16 3 Si 0.91 43.24 24.08 68.60 1.65 44.89 16 4 H -0.26 -12.10 7.07 99.48 0.70 -11.39 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.24 -10.28 5.27 99.48 0.52 -9.76 16 7 C -0.47 -26.78 7.70 25.60 0.20 -26.58 16 8 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 9 C 0.20 9.19 1.43 43.42 0.06 9.25 16 10 H 0.04 1.99 2.31 -2.39 -0.01 1.98 16 11 N -0.54 -22.83 6.38 -174.93 -1.12 -23.94 16 12 N -0.36 -13.95 6.18 -502.21 -3.10 -17.06 16 13 C -0.01 -0.29 4.59 86.65 0.40 0.11 16 14 C -0.12 -3.60 7.06 31.80 0.22 -3.37 16 15 C -0.12 -3.59 6.93 31.47 0.22 -3.37 16 16 C 0.04 1.46 6.97 86.44 0.60 2.06 16 17 C -0.08 -3.43 4.53 -19.87 -0.09 -3.52 16 18 C -0.12 -4.60 8.89 22.27 0.20 -4.40 16 19 C -0.12 -3.81 10.05 22.27 0.22 -3.58 16 20 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 21 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 22 C -0.16 -6.09 8.75 22.27 0.19 -5.90 16 23 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 24 H 0.34 13.37 8.07 -204.85 -1.65 11.72 16 25 H 0.06 2.54 6.88 -2.39 -0.02 2.52 16 26 H 0.06 3.01 4.16 -2.39 -0.01 3.00 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.03 1.27 8.00 -2.39 -0.02 1.25 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.11 4.55 7.93 -2.91 -0.02 4.53 16 34 H 0.14 3.57 8.06 -2.92 -0.02 3.55 16 35 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 36 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.10 3.98 6.37 -2.91 -0.02 3.96 16 Total: -1.00 -66.06 287.20 0.07 -65.98 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.77 Total: 32.99 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 3.12 Total: -44.75 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -3.92 Total: -99.11 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.65 Total: 44.89 kcal Total: -66.06 0.07 -65.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686774045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.265 kcal (2) G-P(sol) polarization free energy of solvation -66.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds