Wall clock time and date at job start Mon Mar 30 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47083 * 95.26278 * 3 2 1 5 5 H 1.48507 * 109.46963 * 215.25768 * 3 2 1 6 6 H 1.48495 * 109.47214 * 335.25729 * 3 2 1 7 7 C 1.37880 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99657 * 9.26766 * 7 2 1 9 9 C 1.50697 * 120.00010 * 189.27324 * 7 2 1 10 10 H 1.09004 * 109.47116 * 334.31549 * 9 7 2 11 11 N 1.46901 * 109.47015 * 214.32129 * 9 7 2 12 12 N 1.45404 * 111.00176 * 89.01606 * 11 9 7 13 13 C 1.48534 * 110.99707 * 117.33000 * 12 11 9 14 14 C 1.54938 * 103.22600 * 159.72340 * 13 12 11 15 15 C 1.54595 * 102.92159 * 322.58494 * 14 13 12 16 16 C 1.47901 * 111.00102 * 234.72647 * 12 11 9 17 17 C 1.50696 * 109.47391 * 94.31762 * 9 7 2 18 18 C 1.38238 * 119.99704 * 73.46263 * 17 9 7 19 19 C 1.38235 * 119.99818 * 179.80944 * 18 17 9 20 20 C 1.38231 * 120.00024 * 0.39551 * 19 18 17 21 21 C 1.38230 * 120.00137 * 359.85726 * 20 19 18 22 22 C 1.38232 * 120.00521 * 253.73569 * 17 9 7 23 23 H 0.97002 * 120.00092 * 0.02562 * 1 2 3 24 24 H 1.00893 * 111.00397 * 212.97467 * 11 9 7 25 25 H 1.09000 * 110.67083 * 278.16098 * 13 12 11 26 26 H 1.09010 * 110.66627 * 41.28964 * 13 12 11 27 27 H 1.09002 * 110.72123 * 204.22905 * 14 13 12 28 28 H 1.08992 * 110.72414 * 80.94715 * 14 13 12 29 29 H 1.09005 * 110.31276 * 263.04448 * 15 14 13 30 30 H 1.08997 * 110.30666 * 140.87094 * 15 14 13 31 31 H 1.08993 * 109.92023 * 333.51229 * 16 12 11 32 32 H 1.08998 * 109.91518 * 94.60833 * 16 12 11 33 33 H 1.08003 * 120.00268 * 0.02562 * 18 17 9 34 34 H 1.08001 * 119.99788 * 180.23111 * 19 18 17 35 35 H 1.08005 * 120.00066 * 179.83329 * 20 19 18 36 36 H 1.08000 * 120.00149 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.99564 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6078 1.9822 1.3942 5 1 3.4868 1.4748 -0.8082 6 1 1.3955 2.6822 -0.5860 7 6 2.0046 -1.1941 0.0005 8 1 1.4751 -2.1233 -0.1497 9 6 3.4968 -1.2025 0.2108 10 1 3.9134 -0.2456 -0.1039 11 7 4.0971 -2.2828 -0.5832 12 7 4.4410 -1.8193 -1.9178 13 6 5.9058 -1.9029 -2.1492 14 6 6.0217 -1.8954 -3.6942 15 6 4.8027 -2.7371 -4.1364 16 6 3.8199 -2.6746 -2.9524 17 6 3.7971 -1.4254 1.6706 18 6 3.6195 -2.6773 2.2294 19 6 3.8988 -2.8828 3.5676 20 6 4.3478 -1.8345 4.3488 21 6 4.5204 -0.5815 3.7913 22 6 4.2448 -0.3769 2.4523 23 1 -0.4850 0.8401 -0.0004 24 1 4.9031 -2.6700 -0.1160 25 1 6.4129 -1.0381 -1.7212 26 1 6.3081 -2.8287 -1.7377 27 1 6.9516 -2.3660 -4.0135 28 1 5.9496 -0.8792 -4.0815 29 1 5.1029 -3.7680 -4.3247 30 1 4.3484 -2.3056 -5.0282 31 1 3.6528 -3.6757 -2.5552 32 1 2.8735 -2.2401 -3.2741 33 1 3.2659 -3.4956 1.6197 34 1 3.7636 -3.8617 4.0033 35 1 4.5635 -1.9944 5.3950 36 1 4.8709 0.2376 4.4018 37 1 4.3797 0.6021 2.0166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686774046.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:45 Heat of formation + Delta-G solvation = 61.341730 kcal Electronic energy + Delta-G solvation = -17965.208649 eV Core-core repulsion = 15322.188758 eV Total energy + Delta-G solvation = -2643.019891 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74537 -37.92875 -34.51816 -32.14210 -30.74628 -30.21470 -28.47440 -27.85502 -25.81182 -22.50076 -21.90733 -20.88377 -20.34165 -19.68303 -16.88862 -16.40444 -15.92722 -15.48921 -14.64593 -14.42768 -14.14716 -13.57296 -13.30310 -12.86242 -12.76705 -12.51575 -12.44011 -12.06516 -11.87189 -11.59104 -11.10756 -10.88437 -10.86016 -10.81631 -10.40736 -10.33420 -10.22075 -9.80374 -9.53200 -8.58592 -8.37994 -8.23467 -7.89749 -7.31835 -6.05994 -4.00391 2.05945 2.10193 3.30938 3.39075 3.42888 4.09069 4.44550 4.51531 4.82655 5.00323 5.16964 5.24801 5.50591 5.53854 5.56889 5.67870 5.71148 5.84717 5.95373 5.99232 6.04697 6.08231 6.20483 6.26467 6.27816 6.48689 6.59974 6.63338 6.73444 6.85582 7.11056 7.14347 7.33476 7.44265 7.59548 7.75111 7.88388 8.42632 8.67480 9.06275 9.57810 11.06508 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.009487 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.484608 B = 2950.745873 C = 3872.738012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.863 3.137 4 H -0.274 1.274 5 H -0.260 1.260 6 H -0.290 1.290 7 C -0.471 4.471 8 H 0.080 0.920 9 C 0.220 3.780 10 H 0.036 0.964 11 N -0.518 5.518 12 N -0.344 5.344 13 C 0.004 3.996 14 C -0.120 4.120 15 C -0.133 4.133 16 C 0.052 3.948 17 C -0.050 4.050 18 C -0.102 4.102 19 C -0.126 4.126 20 C -0.147 4.147 21 C -0.123 4.123 22 C -0.132 4.132 23 H 0.264 0.736 24 H 0.305 0.695 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.884 -3.848 -0.778 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.691 3.309 4 H -0.200 1.200 5 H -0.185 1.185 6 H -0.216 1.216 7 C -0.509 4.509 8 H 0.098 0.902 9 C 0.112 3.888 10 H 0.053 0.947 11 N -0.239 5.239 12 N -0.158 5.158 13 C -0.125 4.125 14 C -0.159 4.159 15 C -0.172 4.172 16 C -0.077 4.077 17 C -0.052 4.052 18 C -0.120 4.120 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.141 4.141 22 C -0.151 4.151 23 H 0.074 0.926 24 H 0.122 0.878 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.884 -3.449 -1.019 11.463 hybrid contribution 1.319 0.733 0.429 1.569 sum 12.203 -2.716 -0.590 12.515 Atomic orbital electron populations 1.69899 1.06181 1.26922 1.50067 1.24959 0.94645 0.98674 0.94391 0.87052 0.80780 0.84273 0.78817 1.19970 1.18468 1.21599 1.20720 0.88294 0.94834 1.47020 0.90210 1.18721 0.96336 0.90200 0.83526 0.94665 1.64424 1.28960 1.32729 0.97826 1.68062 1.03659 1.45968 0.98109 1.23724 0.92046 1.00246 0.96491 1.22398 0.97759 1.00745 0.94968 1.22474 0.96235 0.99554 0.98967 1.22728 0.97945 0.96915 0.90077 1.20773 0.92753 0.92801 0.98902 1.20979 0.99086 0.97538 0.94430 1.21066 1.00513 0.98368 0.94479 1.20875 1.03089 0.93546 0.98992 1.20944 1.01325 0.96799 0.95070 1.21020 1.01141 0.98675 0.94232 0.92636 0.87768 0.90745 0.93744 0.91593 0.90931 0.91981 0.91289 0.92861 0.90010 0.85870 0.87071 0.87286 0.87214 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.96 55.43 0.77 -26.56 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.86 21.76 26.19 -169.99 -4.45 17.31 16 4 H -0.27 -6.70 6.93 56.52 0.39 -6.30 16 5 H -0.26 -6.42 6.45 56.52 0.36 -6.05 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.47 -13.15 9.07 -34.44 -0.31 -13.46 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.22 5.18 2.20 -70.02 -0.15 5.03 16 10 H 0.04 0.88 4.70 -51.93 -0.24 0.64 16 11 N -0.52 -10.74 6.08 -6.65 -0.04 -10.78 16 12 N -0.34 -6.67 5.35 -110.08 -0.59 -7.26 16 13 C 0.00 0.06 6.61 -1.90 -0.01 0.05 16 14 C -0.12 -1.55 7.06 -24.87 -0.18 -1.72 16 15 C -0.13 -1.78 6.93 -25.37 -0.18 -1.95 16 16 C 0.05 0.91 6.97 -2.75 -0.02 0.89 16 17 C -0.05 -1.08 4.64 -104.63 -0.49 -1.57 16 18 C -0.10 -2.02 9.01 -39.58 -0.36 -2.37 16 19 C -0.13 -2.17 10.05 -39.59 -0.40 -2.57 16 20 C -0.15 -2.42 10.05 -39.59 -0.40 -2.82 16 21 C -0.12 -2.18 10.05 -39.59 -0.40 -2.58 16 22 C -0.13 -2.70 9.43 -39.59 -0.37 -3.07 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.31 5.71 7.23 -174.66 -1.26 4.45 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.64 7.83 -51.92 -0.41 0.23 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.93 8.00 -51.93 -0.42 0.52 16 32 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.12 2.42 7.92 -52.48 -0.42 2.01 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.11 2.21 6.93 -52.49 -0.36 1.85 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -30.56 301.59 -9.64 -40.20 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.52 Total: 6.58 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -3.36 Total: -24.04 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.14 Total: -44.60 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.45 Total: 17.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.56 -9.64 -40.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686774046.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.541 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds