Wall clock time and date at job start Mon Mar 30 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47083 * 95.26278 * 3 2 1 5 5 H 1.48507 * 109.46963 * 215.25768 * 3 2 1 6 6 H 1.48495 * 109.47214 * 335.25729 * 3 2 1 7 7 C 1.37880 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99657 * 9.26766 * 7 2 1 9 9 C 1.50697 * 120.00010 * 189.27324 * 7 2 1 10 10 H 1.09004 * 109.47116 * 334.31549 * 9 7 2 11 11 N 1.46901 * 109.47015 * 214.32129 * 9 7 2 12 12 N 1.45404 * 111.00176 * 89.01606 * 11 9 7 13 13 C 1.48534 * 110.99707 * 117.33000 * 12 11 9 14 14 C 1.54938 * 103.22600 * 159.72340 * 13 12 11 15 15 C 1.54595 * 102.92159 * 322.58494 * 14 13 12 16 16 C 1.47901 * 111.00102 * 234.72647 * 12 11 9 17 17 C 1.50696 * 109.47391 * 94.31762 * 9 7 2 18 18 C 1.38238 * 119.99704 * 73.46263 * 17 9 7 19 19 C 1.38235 * 119.99818 * 179.80944 * 18 17 9 20 20 C 1.38231 * 120.00024 * 0.39551 * 19 18 17 21 21 C 1.38230 * 120.00137 * 359.85726 * 20 19 18 22 22 C 1.38232 * 120.00521 * 253.73569 * 17 9 7 23 23 H 0.97002 * 120.00092 * 0.02562 * 1 2 3 24 24 H 1.00893 * 111.00397 * 212.97467 * 11 9 7 25 25 H 1.09000 * 110.67083 * 278.16098 * 13 12 11 26 26 H 1.09010 * 110.66627 * 41.28964 * 13 12 11 27 27 H 1.09002 * 110.72123 * 204.22905 * 14 13 12 28 28 H 1.08992 * 110.72414 * 80.94715 * 14 13 12 29 29 H 1.09005 * 110.31276 * 263.04448 * 15 14 13 30 30 H 1.08997 * 110.30666 * 140.87094 * 15 14 13 31 31 H 1.08993 * 109.92023 * 333.51229 * 16 12 11 32 32 H 1.08998 * 109.91518 * 94.60833 * 16 12 11 33 33 H 1.08003 * 120.00268 * 0.02562 * 18 17 9 34 34 H 1.08001 * 119.99788 * 180.23111 * 19 18 17 35 35 H 1.08005 * 120.00066 * 179.83329 * 20 19 18 36 36 H 1.08000 * 120.00149 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.99564 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6078 1.9822 1.3942 5 1 3.4868 1.4748 -0.8082 6 1 1.3955 2.6822 -0.5860 7 6 2.0046 -1.1941 0.0005 8 1 1.4751 -2.1233 -0.1497 9 6 3.4968 -1.2025 0.2108 10 1 3.9134 -0.2456 -0.1039 11 7 4.0971 -2.2828 -0.5832 12 7 4.4410 -1.8193 -1.9178 13 6 5.9058 -1.9029 -2.1492 14 6 6.0217 -1.8954 -3.6942 15 6 4.8027 -2.7371 -4.1364 16 6 3.8199 -2.6746 -2.9524 17 6 3.7971 -1.4254 1.6706 18 6 3.6195 -2.6773 2.2294 19 6 3.8988 -2.8828 3.5676 20 6 4.3478 -1.8345 4.3488 21 6 4.5204 -0.5815 3.7913 22 6 4.2448 -0.3769 2.4523 23 1 -0.4850 0.8401 -0.0004 24 1 4.9031 -2.6700 -0.1160 25 1 6.4129 -1.0381 -1.7212 26 1 6.3081 -2.8287 -1.7377 27 1 6.9516 -2.3660 -4.0135 28 1 5.9496 -0.8792 -4.0815 29 1 5.1029 -3.7680 -4.3247 30 1 4.3484 -2.3056 -5.0282 31 1 3.6528 -3.6757 -2.5552 32 1 2.8735 -2.2401 -3.2741 33 1 3.2659 -3.4956 1.6197 34 1 3.7636 -3.8617 4.0033 35 1 4.5635 -1.9944 5.3950 36 1 4.8709 0.2376 4.4018 37 1 4.3797 0.6021 2.0166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686774046.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:45 Heat of formation + Delta-G solvation = 41.714515 kcal Electronic energy + Delta-G solvation = -17966.059749 eV Core-core repulsion = 15322.188758 eV Total energy + Delta-G solvation = -2643.870991 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24744 -39.26585 -36.18573 -34.16767 -32.23087 -31.65407 -29.73472 -29.42571 -27.64766 -24.19187 -23.35613 -22.15275 -21.71632 -21.27608 -18.97226 -17.94612 -17.30118 -16.80314 -16.38723 -16.08262 -15.74649 -15.03761 -14.76899 -14.57277 -14.25587 -14.10585 -13.90619 -13.46873 -13.43234 -13.04912 -12.74425 -12.48861 -12.23277 -12.17950 -12.04866 -11.86721 -11.67255 -11.50516 -11.42010 -10.72926 -9.95878 -9.69575 -9.43968 -8.92914 -8.28198 -6.25892 0.59771 0.64423 1.27337 1.32375 1.41442 2.33151 2.60959 2.96745 3.17167 3.61774 3.86639 4.06984 4.12047 4.21299 4.30416 4.36730 4.38289 4.48447 4.61460 4.72521 4.78279 4.79859 4.90489 4.98086 4.98761 5.11650 5.17883 5.24840 5.29297 5.34975 5.58541 5.68056 5.70818 5.88556 5.95118 6.04071 6.26963 6.59168 6.71991 6.97691 7.36489 8.88730 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.009487 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.484608 B = 2950.745873 C = 3872.738012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.020 3.980 3 Si 0.925 3.075 4 H -0.258 1.258 5 H -0.255 1.255 6 H -0.290 1.290 7 C -0.467 4.467 8 H 0.032 0.968 9 C 0.233 3.767 10 H 0.021 0.979 11 N -0.524 5.524 12 N -0.375 5.375 13 C 0.003 3.997 14 C -0.111 4.111 15 C -0.123 4.123 16 C 0.049 3.951 17 C -0.078 4.078 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.135 4.135 21 C -0.122 4.122 22 C -0.152 4.152 23 H 0.264 0.736 24 H 0.318 0.682 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.112 0.888 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.822 -3.902 0.454 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.178 4.178 3 Si 0.750 3.250 4 H -0.183 1.183 5 H -0.179 1.179 6 H -0.216 1.216 7 C -0.505 4.505 8 H 0.050 0.950 9 C 0.124 3.876 10 H 0.038 0.962 11 N -0.246 5.246 12 N -0.190 5.190 13 C -0.126 4.126 14 C -0.150 4.150 15 C -0.161 4.161 16 C -0.080 4.080 17 C -0.080 4.080 18 C -0.136 4.136 19 C -0.140 4.140 20 C -0.152 4.152 21 C -0.140 4.140 22 C -0.171 4.171 23 H 0.073 0.927 24 H 0.136 0.864 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.855 -3.520 0.218 14.297 hybrid contribution 0.460 0.596 0.104 0.760 sum 14.315 -2.924 0.322 14.614 Atomic orbital electron populations 1.70044 1.07881 1.27684 1.52930 1.25692 0.95303 1.02211 0.94590 0.86073 0.79410 0.79907 0.79607 1.18295 1.17937 1.21604 1.20850 0.90801 0.92836 1.46049 0.94977 1.18385 0.93411 0.90241 0.85552 0.96165 1.64123 1.30036 1.31922 0.98539 1.67938 1.06702 1.47029 0.97333 1.23800 0.89244 1.00833 0.98682 1.22414 0.98903 1.00983 0.92672 1.22427 0.95253 1.01331 0.97116 1.22703 0.98060 0.95703 0.91506 1.20589 0.95509 0.94343 0.97541 1.21009 0.99977 0.96652 0.95979 1.21435 0.99026 1.00343 0.93178 1.21379 1.00600 0.92460 1.00801 1.21334 1.00126 0.98505 0.94010 1.21142 1.02219 0.97991 0.95724 0.92714 0.86418 0.90863 0.92422 0.88185 0.91093 0.89620 0.90263 0.93666 0.93214 0.87033 0.83866 0.83089 0.84003 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.66 13.96 21.45 0.30 -60.36 16 2 C 0.02 1.18 5.47 84.66 0.46 1.64 16 3 Si 0.92 46.30 26.19 68.60 1.80 48.10 16 4 H -0.26 -12.14 6.93 99.48 0.69 -11.45 16 5 H -0.25 -12.38 6.45 99.48 0.64 -11.74 16 6 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 7 C -0.47 -27.51 9.07 25.60 0.23 -27.28 16 8 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 9 C 0.23 11.30 2.20 43.42 0.10 11.39 16 10 H 0.02 1.05 4.70 -2.38 -0.01 1.04 16 11 N -0.52 -22.40 6.08 -174.96 -1.06 -23.46 16 12 N -0.37 -14.76 5.35 -502.19 -2.69 -17.45 16 13 C 0.00 0.09 6.61 86.65 0.57 0.66 16 14 C -0.11 -2.56 7.06 31.80 0.22 -2.34 16 15 C -0.12 -3.04 6.93 31.47 0.22 -2.82 16 16 C 0.05 1.75 6.97 86.45 0.60 2.35 16 17 C -0.08 -3.38 4.64 -19.87 -0.09 -3.47 16 18 C -0.12 -4.62 9.01 22.27 0.20 -4.42 16 19 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 20 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 21 C -0.12 -3.88 10.05 22.27 0.22 -3.66 16 22 C -0.15 -6.03 9.43 22.27 0.21 -5.82 16 23 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 24 H 0.32 12.04 7.23 -204.85 -1.48 10.56 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 1.54 7.83 -2.38 -0.02 1.52 16 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.64 8.00 -2.39 -0.02 1.62 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.11 4.52 7.92 -2.91 -0.02 4.50 16 34 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 36 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.10 4.08 6.93 -2.91 -0.02 4.06 16 Total: -1.00 -70.49 301.59 1.23 -69.26 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.52 Total: 24.91 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 3.40 Total: -41.00 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -3.45 Total: -101.27 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.80 Total: 48.10 kcal Total: -70.49 1.23 -69.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686774046.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.978 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds