Wall clock time and date at job start Mon Mar 30 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46596 * 2 1 4 4 C 1.52999 * 109.47363 * 119.99919 * 2 1 3 5 5 C 1.50705 * 109.46963 * 185.00082 * 4 2 1 6 6 H 1.07993 * 119.99969 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99652 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99743 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00156 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47062 * 89.99984 * 9 7 5 11 11 H 1.48504 * 109.47088 * 209.99892 * 9 7 5 12 12 H 1.48504 * 109.47337 * 329.99857 * 9 7 5 13 13 O 1.42901 * 109.47112 * 240.00728 * 2 1 3 14 14 C 1.42893 * 114.00493 * 89.99390 * 13 2 1 15 15 C 1.50694 * 109.47451 * 179.97438 * 14 13 2 16 16 C 1.32564 * 120.00601 * 135.99695 * 15 14 13 17 17 C 1.47813 * 119.99292 * 8.07111 * 16 15 14 18 18 C 1.39538 * 120.14628 * 34.97943 * 17 16 15 19 19 C 1.37970 * 119.85877 * 179.97438 * 18 17 16 20 20 C 1.38353 * 120.14141 * 359.97438 * 19 18 17 21 21 C 1.38346 * 120.28451 * 0.02562 * 20 19 18 22 22 C 1.37969 * 120.14252 * 0.02562 * 21 20 19 23 23 H 1.08993 * 109.47492 * 59.99986 * 1 2 3 24 24 H 1.09008 * 109.46596 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46981 * 299.99588 * 1 2 3 26 26 H 1.09002 * 109.47248 * 305.00131 * 4 2 1 27 27 H 1.09001 * 109.47052 * 65.00268 * 4 2 1 28 28 H 0.97004 * 120.00088 * 180.02562 * 8 7 5 29 29 H 1.09008 * 109.47093 * 60.00277 * 14 13 2 30 30 H 1.08996 * 109.47074 * 300.00215 * 14 13 2 31 31 H 1.08008 * 119.99961 * 316.00291 * 15 14 13 32 32 H 1.07991 * 120.00643 * 188.06451 * 16 15 14 33 33 H 1.08001 * 120.07072 * 359.95431 * 18 17 16 34 34 H 1.07999 * 119.93129 * 179.97438 * 19 18 17 35 35 H 1.07996 * 119.85638 * 179.74339 * 20 19 18 36 36 H 1.07993 * 119.92693 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.07152 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2306 -1.1934 2.3577 8 7 5.5412 -1.1001 2.4133 9 14 3.3019 -2.1097 3.6945 10 1 3.1714 -3.5396 3.3153 11 1 4.0452 -2.0032 4.9756 12 1 1.9507 -1.5149 3.8553 13 8 2.0064 -0.6735 -1.1669 14 6 2.2000 0.1831 -2.2941 15 6 2.7014 -0.6279 -3.4611 16 6 2.1917 -0.4358 -4.6696 17 6 1.2643 0.6899 -4.9101 18 6 1.4413 1.8995 -4.2374 19 6 0.5725 2.9465 -4.4668 20 6 -0.4721 2.7991 -5.3619 21 6 -0.6530 1.6024 -6.0320 22 6 0.2081 0.5474 -5.8108 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6055 -0.2617 2.1370 27 1 1.7518 -1.7715 1.2056 28 1 6.0257 -1.5075 3.1483 29 1 2.9319 0.9515 -2.0451 30 1 1.2537 0.6547 -2.5588 31 1 3.4759 -1.3659 -3.3128 32 1 2.4540 -1.1015 -5.4785 33 1 2.2564 2.0159 -3.5385 34 1 0.7081 3.8831 -3.9465 35 1 -1.1519 3.6203 -5.5348 36 1 -1.4706 1.4935 -6.7292 37 1 0.0661 -0.3862 -6.3349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:39 Heat of formation + Delta-G solvation = -10.888805 kcal Electronic energy + Delta-G solvation = -17119.999849 eV Core-core repulsion = 14441.555056 eV Total energy + Delta-G solvation = -2678.444794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46129 -37.68248 -34.84603 -32.97488 -31.44609 -31.04219 -29.54187 -27.86448 -26.02191 -22.89654 -22.54512 -22.18908 -20.15059 -19.10176 -16.90280 -16.64631 -16.08320 -15.60663 -15.02288 -14.76163 -14.46178 -14.00371 -13.51054 -13.36612 -13.02188 -12.61461 -12.38938 -12.28809 -12.04181 -11.89113 -11.63680 -11.27284 -11.12255 -10.85080 -10.60782 -10.27890 -9.92785 -9.77794 -9.57926 -9.17365 -9.01493 -8.61742 -8.48186 -8.21531 -5.97934 -3.94166 0.99183 1.34210 2.40380 3.35147 3.41728 3.44512 3.79293 4.45183 4.50400 4.77828 4.82873 4.89805 5.04900 5.27468 5.38301 5.39708 5.44548 5.57088 5.69451 5.74891 5.87406 5.89389 5.91578 6.00338 6.06642 6.26719 6.31849 6.40951 6.45711 6.60192 6.65494 6.74474 6.81836 6.95514 7.17997 7.26330 7.81800 8.08999 8.60412 9.07461 9.64127 11.15863 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037465 B = 0.004558 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.175993 B = 6142.152863 C = 6395.272943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 H 0.052 0.948 4 C -0.013 4.013 5 C -0.507 4.507 6 H 0.072 0.928 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.267 1.267 13 O -0.364 6.364 14 C 0.077 3.923 15 C -0.110 4.110 16 C -0.141 4.141 17 C -0.049 4.049 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.112 4.112 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.029 0.971 27 H 0.021 0.979 28 H 0.262 0.738 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 5.780 -15.268 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.044 3.956 3 H 0.070 0.930 4 C -0.051 4.051 5 C -0.545 4.545 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.191 1.191 13 O -0.283 6.283 14 C 0.000 4.000 15 C -0.128 4.128 16 C -0.159 4.159 17 C -0.049 4.049 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.130 4.130 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.366 5.535 -15.154 19.735 hybrid contribution -0.367 -0.304 0.736 0.877 sum -11.734 5.231 -14.418 19.311 Atomic orbital electron populations 1.22362 0.98076 1.01948 1.00805 1.22109 0.90830 0.96186 0.86499 0.92991 1.19734 0.97842 0.96121 0.91360 1.21028 0.89569 1.34784 1.09123 0.91013 1.24999 0.94728 0.95971 0.97882 1.69912 1.06492 1.45747 1.32382 0.86803 0.80349 0.80726 0.81531 1.20292 1.21474 1.19127 1.87995 1.86694 1.34282 1.19378 1.21884 0.98805 0.92818 0.86447 1.23281 0.97363 0.99251 0.92885 1.21571 0.98763 0.97721 0.97866 1.19142 0.95435 0.93867 0.96454 1.21592 0.99943 0.92619 0.99025 1.21112 0.95455 0.98832 0.98477 1.21174 0.98209 0.97675 0.97306 1.21058 0.99488 0.93471 1.00117 1.21260 0.94745 0.98781 0.98253 0.93729 0.92382 0.92151 0.95297 0.96096 0.92864 0.92571 0.92443 0.85529 0.85800 0.85343 0.85965 0.86321 0.86223 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.53 37.16 0.35 -2.64 16 2 C 0.10 2.12 2.67 -26.73 -0.07 2.04 16 3 H 0.05 1.06 7.79 -51.92 -0.40 0.66 16 4 C -0.01 -0.33 3.75 -27.88 -0.10 -0.43 16 5 C -0.51 -14.76 9.43 -34.44 -0.32 -15.09 16 6 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 7 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.91 -28.37 13.96 55.43 0.77 -27.60 16 9 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 O -0.36 -7.78 9.72 -35.23 -0.34 -8.12 16 14 C 0.08 1.31 4.33 36.00 0.16 1.47 16 15 C -0.11 -1.67 9.84 -36.22 -0.36 -2.02 16 16 C -0.14 -1.82 9.81 -37.57 -0.37 -2.19 16 17 C -0.05 -0.62 5.19 -105.01 -0.54 -1.17 16 18 C -0.11 -1.43 7.41 -39.20 -0.29 -1.72 16 19 C -0.12 -1.33 10.03 -39.64 -0.40 -1.73 16 20 C -0.13 -1.27 10.04 -39.50 -0.40 -1.67 16 21 C -0.12 -1.25 10.03 -39.64 -0.40 -1.64 16 22 C -0.11 -1.26 9.79 -39.19 -0.38 -1.64 16 23 H 0.04 0.69 7.87 -51.93 -0.41 0.28 16 24 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 27 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.06 0.96 7.46 -51.92 -0.39 0.57 16 30 H 0.06 0.92 5.02 -51.93 -0.26 0.66 16 31 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.62 5.79 -52.49 -0.30 1.31 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -32.22 308.84 -8.31 -40.53 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.50 Total: -0.28 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -3.22 Total: -26.61 kcal Atomic # 7 Polarization: -28.37 SS G_CDS: 0.77 Total: -27.60 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.34 Total: -8.12 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.22 -8.31 -40.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.636 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds