Wall clock time and date at job start Mon Mar 30 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46596 * 2 1 4 4 C 1.52999 * 109.47363 * 119.99919 * 2 1 3 5 5 C 1.50705 * 109.46963 * 185.00082 * 4 2 1 6 6 H 1.07993 * 119.99969 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99652 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99743 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00156 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47062 * 89.99984 * 9 7 5 11 11 H 1.48504 * 109.47088 * 209.99892 * 9 7 5 12 12 H 1.48504 * 109.47337 * 329.99857 * 9 7 5 13 13 O 1.42901 * 109.47112 * 240.00728 * 2 1 3 14 14 C 1.42893 * 114.00493 * 89.99390 * 13 2 1 15 15 C 1.50694 * 109.47451 * 179.97438 * 14 13 2 16 16 C 1.32564 * 120.00601 * 135.99695 * 15 14 13 17 17 C 1.47813 * 119.99292 * 8.07111 * 16 15 14 18 18 C 1.39538 * 120.14628 * 34.97943 * 17 16 15 19 19 C 1.37970 * 119.85877 * 179.97438 * 18 17 16 20 20 C 1.38353 * 120.14141 * 359.97438 * 19 18 17 21 21 C 1.38346 * 120.28451 * 0.02562 * 20 19 18 22 22 C 1.37969 * 120.14252 * 0.02562 * 21 20 19 23 23 H 1.08993 * 109.47492 * 59.99986 * 1 2 3 24 24 H 1.09008 * 109.46596 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46981 * 299.99588 * 1 2 3 26 26 H 1.09002 * 109.47248 * 305.00131 * 4 2 1 27 27 H 1.09001 * 109.47052 * 65.00268 * 4 2 1 28 28 H 0.97004 * 120.00088 * 180.02562 * 8 7 5 29 29 H 1.09008 * 109.47093 * 60.00277 * 14 13 2 30 30 H 1.08996 * 109.47074 * 300.00215 * 14 13 2 31 31 H 1.08008 * 119.99961 * 316.00291 * 15 14 13 32 32 H 1.07991 * 120.00643 * 188.06451 * 16 15 14 33 33 H 1.08001 * 120.07072 * 359.95431 * 18 17 16 34 34 H 1.07999 * 119.93129 * 179.97438 * 19 18 17 35 35 H 1.07996 * 119.85638 * 179.74339 * 20 19 18 36 36 H 1.07993 * 119.92693 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.07152 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2306 -1.1934 2.3577 8 7 5.5412 -1.1001 2.4133 9 14 3.3019 -2.1097 3.6945 10 1 3.1714 -3.5396 3.3153 11 1 4.0452 -2.0032 4.9756 12 1 1.9507 -1.5149 3.8553 13 8 2.0064 -0.6735 -1.1669 14 6 2.2000 0.1831 -2.2941 15 6 2.7014 -0.6279 -3.4611 16 6 2.1917 -0.4358 -4.6696 17 6 1.2643 0.6899 -4.9101 18 6 1.4413 1.8995 -4.2374 19 6 0.5725 2.9465 -4.4668 20 6 -0.4721 2.7991 -5.3619 21 6 -0.6530 1.6024 -6.0320 22 6 0.2081 0.5474 -5.8108 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6055 -0.2617 2.1370 27 1 1.7518 -1.7715 1.2056 28 1 6.0257 -1.5075 3.1483 29 1 2.9319 0.9515 -2.0451 30 1 1.2537 0.6547 -2.5588 31 1 3.4759 -1.3659 -3.3128 32 1 2.4540 -1.1015 -5.4785 33 1 2.2564 2.0159 -3.5385 34 1 0.7081 3.8831 -3.9465 35 1 -1.1519 3.6203 -5.5348 36 1 -1.4706 1.4935 -6.7292 37 1 0.0661 -0.3862 -6.3349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:39 Heat of formation + Delta-G solvation = -29.148180 kcal Electronic energy + Delta-G solvation = -17120.791635 eV Core-core repulsion = 14441.555056 eV Total energy + Delta-G solvation = -2679.236580 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40692 -39.16016 -36.07173 -34.94632 -33.19444 -31.92234 -30.56224 -29.71207 -27.26132 -24.77666 -23.42666 -23.21643 -21.85619 -20.18491 -18.92077 -18.08545 -17.21554 -16.74168 -16.42245 -16.21245 -15.77666 -15.33427 -14.78934 -14.63530 -14.33256 -14.01938 -13.78796 -13.71139 -13.52865 -13.41455 -13.01309 -12.62738 -12.51718 -12.18480 -11.94690 -11.77994 -11.64653 -11.50692 -11.29385 -10.87053 -10.75158 -10.26251 -9.76982 -9.20083 -8.26516 -6.29187 0.05163 0.49839 1.36019 1.37065 1.38472 1.49936 2.37842 2.89010 3.01894 3.15054 3.78824 3.96183 4.05975 4.11016 4.22243 4.25254 4.31064 4.36158 4.44902 4.51714 4.59641 4.62230 4.80274 4.88661 5.03543 5.05208 5.15096 5.16868 5.24517 5.37785 5.38939 5.46263 5.61804 5.65115 5.66580 5.81329 6.10970 6.28783 6.54397 6.76542 7.33040 8.90834 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037465 B = 0.004558 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.175993 B = 6142.152863 C = 6395.272943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 H 0.045 0.955 4 C -0.012 4.012 5 C -0.518 4.518 6 H 0.026 0.974 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.242 1.242 13 O -0.395 6.395 14 C 0.083 3.917 15 C -0.151 4.151 16 C -0.107 4.107 17 C -0.078 4.078 18 C -0.132 4.132 19 C -0.131 4.131 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.115 4.115 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.019 0.981 28 H 0.265 0.735 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.149 0.851 33 H 0.116 0.884 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.744 5.874 -16.024 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.064 0.936 4 C -0.050 4.050 5 C -0.556 4.556 6 H 0.045 0.955 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.165 1.165 13 O -0.315 6.315 14 C 0.007 3.993 15 C -0.169 4.169 16 C -0.124 4.124 17 C -0.078 4.078 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.133 4.133 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.166 0.834 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.574 5.644 -15.927 22.314 hybrid contribution 0.647 -0.220 0.783 1.039 sum -13.927 5.425 -15.144 21.277 Atomic orbital electron populations 1.22232 0.94507 1.02623 1.02605 1.22051 0.93515 0.95049 0.85284 0.93648 1.19710 0.94645 0.96611 0.94008 1.21313 0.92193 1.34105 1.07959 0.95530 1.26018 0.95643 0.97025 1.00817 1.70076 1.08574 1.47247 1.33672 0.85639 0.79868 0.79217 0.77795 1.19634 1.20813 1.16483 1.87927 1.87141 1.35968 1.20458 1.21951 0.99224 0.92372 0.85719 1.23099 0.99518 1.00899 0.93366 1.21854 0.96456 0.96884 0.97240 1.19271 0.96677 0.93803 0.98003 1.21644 1.00386 0.93574 0.99352 1.21365 0.95531 0.98989 0.99002 1.21566 0.97777 0.98575 0.96088 1.21451 0.99765 0.92913 1.00114 1.21536 0.94159 1.00054 0.97515 0.91981 0.92218 0.90296 0.93923 0.96261 0.92613 0.94103 0.90972 0.86643 0.83391 0.86618 0.84569 0.83611 0.83341 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 9.53 71.98 0.69 -4.54 16 2 C 0.10 4.13 2.67 30.59 0.08 4.21 16 3 H 0.05 1.92 7.79 -2.38 -0.02 1.90 16 4 C -0.01 -0.61 3.75 29.85 0.11 -0.50 16 5 C -0.52 -31.22 9.43 25.60 0.24 -30.98 16 6 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 7 C 0.00 0.05 5.47 84.65 0.46 0.52 16 8 N -0.95 -61.78 13.96 21.45 0.30 -61.48 16 9 Si 0.95 45.48 27.47 68.60 1.88 47.36 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 13 O -0.39 -17.42 9.72 -148.98 -1.45 -18.87 16 14 C 0.08 2.97 4.33 71.23 0.31 3.28 16 15 C -0.15 -4.78 9.84 24.53 0.24 -4.53 16 16 C -0.11 -2.70 9.81 23.65 0.23 -2.47 16 17 C -0.08 -1.89 5.19 -20.12 -0.10 -1.99 16 18 C -0.13 -3.26 7.41 22.52 0.17 -3.09 16 19 C -0.13 -2.68 10.03 22.23 0.22 -2.46 16 20 C -0.12 -2.08 10.04 22.32 0.22 -1.86 16 21 C -0.12 -2.08 10.03 22.23 0.22 -1.86 16 22 C -0.11 -2.26 9.79 22.52 0.22 -2.04 16 23 H 0.06 1.77 7.87 -2.39 -0.02 1.75 16 24 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.04 1.97 7.20 -2.39 -0.02 1.95 16 27 H 0.02 0.94 7.57 -2.39 -0.02 0.93 16 28 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.04 1.53 7.46 -2.38 -0.02 1.52 16 30 H 0.07 2.33 5.02 -2.39 -0.01 2.32 16 31 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.15 2.94 8.06 -2.92 -0.02 2.92 16 33 H 0.12 3.07 5.79 -2.91 -0.02 3.05 16 34 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -71.73 308.84 5.03 -66.70 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.97 Total: 14.61 kcal Atomic # 6 Polarization: -51.63 SS G_CDS: 3.32 Total: -48.31 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.30 Total: -61.48 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.45 Total: -18.87 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.36 kcal Total: -71.73 5.03 -66.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.552 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds