Wall clock time and date at job start Mon Mar 30 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47257 * 2 1 4 4 C 1.53004 * 109.47059 * 120.00046 * 2 1 3 5 5 C 1.50699 * 109.46847 * 184.99953 * 4 2 1 6 6 H 1.08002 * 120.00511 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99573 * 180.27665 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 O 1.42899 * 109.47298 * 239.99894 * 2 1 3 14 14 C 1.42898 * 114.00251 * 89.99593 * 13 2 1 15 15 C 1.50703 * 109.47410 * 180.02562 * 14 13 2 16 16 C 1.32558 * 120.00069 * 135.00540 * 15 14 13 17 17 C 1.47817 * 119.99862 * 180.02562 * 16 15 14 18 18 C 1.39524 * 120.14245 * 359.71813 * 17 16 15 19 19 C 1.37974 * 119.85798 * 179.68011 * 18 17 16 20 20 C 1.38343 * 120.13927 * 0.62205 * 19 18 17 21 21 C 1.38350 * 120.28583 * 359.67765 * 20 19 18 22 22 C 1.37973 * 120.14131 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46706 * 300.00421 * 1 2 3 25 25 H 1.09001 * 109.47292 * 59.99919 * 1 2 3 26 26 H 1.08992 * 109.47264 * 65.00127 * 4 2 1 27 27 H 1.09005 * 109.46510 * 304.99713 * 4 2 1 28 28 H 0.97004 * 119.99485 * 179.72881 * 8 7 5 29 29 H 1.08998 * 109.47139 * 300.00530 * 14 13 2 30 30 H 1.09001 * 109.46822 * 60.00380 * 14 13 2 31 31 H 1.08001 * 119.99671 * 315.00724 * 15 14 13 32 32 H 1.08000 * 119.99960 * 359.97438 * 16 15 14 33 33 H 1.08007 * 120.07401 * 359.97438 * 18 17 16 34 34 H 1.07998 * 119.93428 * 180.32566 * 19 18 17 35 35 H 1.08002 * 119.85938 * 179.69795 * 20 19 18 36 36 H 1.08001 * 119.92496 * 180.02562 * 21 20 19 37 37 H 1.07994 * 120.06989 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3584 8 7 5.5406 -1.0952 2.4165 9 14 3.3013 -2.1066 3.6966 10 1 3.1696 -3.5368 3.3194 11 1 4.0451 -1.9989 4.9774 12 1 1.9507 -1.5106 3.8570 13 8 2.0064 -0.6736 -1.1667 14 6 2.2001 0.1828 -2.2941 15 6 2.7003 -0.6285 -3.4614 16 6 2.1764 -0.4498 -4.6659 17 6 2.6667 -1.2460 -5.8107 18 6 3.6848 -2.1824 -5.6280 19 6 4.1334 -2.9271 -6.6994 20 6 3.5848 -2.7379 -7.9552 21 6 2.5793 -1.8066 -8.1442 22 6 2.1169 -1.0606 -7.0797 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.7517 -1.7715 1.2056 27 1 1.6053 -0.2616 2.1370 28 1 6.0246 -1.4983 3.1543 29 1 1.2538 0.6545 -2.5588 30 1 2.9320 0.9512 -2.0451 31 1 3.4856 -1.3556 -3.3166 32 1 1.3908 0.2770 -4.8106 33 1 4.1176 -2.3273 -4.6491 34 1 4.9178 -3.6560 -6.5583 35 1 3.9428 -3.3199 -8.7916 36 1 2.1549 -1.6640 -9.1271 37 1 1.3317 -0.3343 -7.2285 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:41 Heat of formation + Delta-G solvation = -18.439431 kcal Electronic energy + Delta-G solvation = -16572.123305 eV Core-core repulsion = 13893.351091 eV Total energy + Delta-G solvation = -2678.772213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.22909 -37.78891 -34.74231 -33.03670 -31.53963 -31.01728 -29.86968 -27.88643 -25.60749 -23.00428 -22.75763 -21.85330 -20.18711 -19.15665 -17.25597 -16.68408 -16.09091 -15.40095 -15.08421 -14.67193 -14.41627 -14.02757 -13.42713 -13.32883 -13.01038 -12.76905 -12.49530 -12.33884 -12.03820 -11.71114 -11.64784 -11.40094 -10.98893 -10.85428 -10.66852 -10.37780 -10.15325 -9.79285 -9.67552 -9.17873 -9.01516 -8.76896 -8.48895 -8.06685 -5.98620 -3.94979 0.90762 1.34808 2.51129 3.34647 3.41289 3.43837 3.87914 4.32730 4.49524 4.77123 4.86744 4.91104 5.03282 5.25698 5.36747 5.39138 5.39494 5.55777 5.65432 5.75794 5.79551 5.87548 5.93016 5.97765 5.99546 6.23887 6.29823 6.39529 6.45816 6.57900 6.71248 6.71763 6.83603 6.94963 7.16158 7.24707 7.80717 8.05392 8.59450 9.06765 9.63308 11.15125 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028182 B = 0.004070 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.315039 B = 6878.594922 C = 7540.324065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.053 0.947 4 C -0.013 4.013 5 C -0.508 4.508 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 O -0.363 6.363 14 C 0.087 3.913 15 C -0.109 4.109 16 C -0.138 4.138 17 C -0.043 4.043 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.129 4.129 21 C -0.122 4.122 22 C -0.116 4.116 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.021 0.979 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 0.386 -17.645 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.042 3.958 3 H 0.072 0.928 4 C -0.051 4.051 5 C -0.546 4.546 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.191 1.191 13 O -0.282 6.282 14 C 0.011 3.989 15 C -0.127 4.127 16 C -0.156 4.156 17 C -0.043 4.043 18 C -0.134 4.134 19 C -0.135 4.135 20 C -0.147 4.147 21 C -0.140 4.140 22 C -0.134 4.134 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.417 0.141 -17.533 19.037 hybrid contribution -0.377 -0.261 0.728 0.860 sum -7.794 -0.120 -16.805 18.525 Atomic orbital electron populations 1.22365 0.98020 1.01988 1.00833 1.22140 0.90865 0.96284 0.86503 0.92846 1.19732 0.97858 0.96126 0.91341 1.21031 0.89563 1.34795 1.09187 0.90992 1.25008 0.94734 0.95969 0.97894 1.69916 1.06537 1.45812 1.32222 0.86801 0.80343 0.80708 0.81538 1.20289 1.21475 1.19122 1.88022 1.86741 1.34126 1.19322 1.21384 0.98485 0.92702 0.86353 1.23343 0.98329 0.98147 0.92912 1.21506 1.01237 1.00718 0.92147 1.19078 0.95826 0.96066 0.93359 1.21460 0.96660 0.95766 0.99523 1.21115 1.00018 0.99489 0.92851 1.21177 0.97428 0.98869 0.97223 1.21053 0.97518 0.96706 0.98694 1.21238 1.00144 0.99906 0.92093 0.92341 0.92106 0.93719 0.96082 0.95269 0.92856 0.93703 0.92118 0.85933 0.86451 0.85316 0.85963 0.86330 0.86219 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.53 37.16 0.35 -2.53 16 2 C 0.10 2.04 2.67 -26.73 -0.07 1.97 16 3 H 0.05 1.07 7.79 -51.93 -0.40 0.67 16 4 C -0.01 -0.33 3.75 -27.88 -0.10 -0.43 16 5 C -0.51 -14.70 9.43 -34.44 -0.32 -15.03 16 6 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.28 13.96 55.43 0.77 -27.51 16 9 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 O -0.36 -7.60 9.72 -35.23 -0.34 -7.94 16 14 C 0.09 1.45 6.17 36.01 0.22 1.67 16 15 C -0.11 -1.66 9.31 -36.21 -0.34 -1.99 16 16 C -0.14 -1.80 9.51 -37.57 -0.36 -2.16 16 17 C -0.04 -0.55 5.87 -105.02 -0.62 -1.17 16 18 C -0.12 -1.48 9.40 -39.20 -0.37 -1.85 16 19 C -0.12 -1.30 10.03 -39.64 -0.40 -1.69 16 20 C -0.13 -1.29 10.04 -39.50 -0.40 -1.69 16 21 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 22 C -0.12 -1.27 9.79 -39.19 -0.38 -1.65 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.64 7.87 -51.93 -0.41 0.23 16 26 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 27 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 29 H 0.04 0.64 7.61 -51.93 -0.40 0.25 16 30 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.12 1.93 6.04 -52.49 -0.32 1.61 16 32 H 0.12 1.31 7.92 -52.49 -0.42 0.90 16 33 H 0.13 1.63 6.17 -52.48 -0.32 1.31 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -32.06 313.96 -8.36 -40.42 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.57 Total: -0.68 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -3.28 Total: -26.35 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 0.77 Total: -27.51 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.34 Total: -7.94 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.06 -8.36 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.981 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds