Wall clock time and date at job start Mon Mar 30 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47257 * 2 1 4 4 C 1.53004 * 109.47059 * 120.00046 * 2 1 3 5 5 C 1.50699 * 109.46847 * 184.99953 * 4 2 1 6 6 H 1.08002 * 120.00511 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99573 * 180.27665 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 O 1.42899 * 109.47298 * 239.99894 * 2 1 3 14 14 C 1.42898 * 114.00251 * 89.99593 * 13 2 1 15 15 C 1.50703 * 109.47410 * 180.02562 * 14 13 2 16 16 C 1.32558 * 120.00069 * 135.00540 * 15 14 13 17 17 C 1.47817 * 119.99862 * 180.02562 * 16 15 14 18 18 C 1.39524 * 120.14245 * 359.71813 * 17 16 15 19 19 C 1.37974 * 119.85798 * 179.68011 * 18 17 16 20 20 C 1.38343 * 120.13927 * 0.62205 * 19 18 17 21 21 C 1.38350 * 120.28583 * 359.67765 * 20 19 18 22 22 C 1.37973 * 120.14131 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46706 * 300.00421 * 1 2 3 25 25 H 1.09001 * 109.47292 * 59.99919 * 1 2 3 26 26 H 1.08992 * 109.47264 * 65.00127 * 4 2 1 27 27 H 1.09005 * 109.46510 * 304.99713 * 4 2 1 28 28 H 0.97004 * 119.99485 * 179.72881 * 8 7 5 29 29 H 1.08998 * 109.47139 * 300.00530 * 14 13 2 30 30 H 1.09001 * 109.46822 * 60.00380 * 14 13 2 31 31 H 1.08001 * 119.99671 * 315.00724 * 15 14 13 32 32 H 1.08000 * 119.99960 * 359.97438 * 16 15 14 33 33 H 1.08007 * 120.07401 * 359.97438 * 18 17 16 34 34 H 1.07998 * 119.93428 * 180.32566 * 19 18 17 35 35 H 1.08002 * 119.85938 * 179.69795 * 20 19 18 36 36 H 1.08001 * 119.92496 * 180.02562 * 21 20 19 37 37 H 1.07994 * 120.06989 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3584 8 7 5.5406 -1.0952 2.4165 9 14 3.3013 -2.1066 3.6966 10 1 3.1696 -3.5368 3.3194 11 1 4.0451 -1.9989 4.9774 12 1 1.9507 -1.5106 3.8570 13 8 2.0064 -0.6736 -1.1667 14 6 2.2001 0.1828 -2.2941 15 6 2.7003 -0.6285 -3.4614 16 6 2.1764 -0.4498 -4.6659 17 6 2.6667 -1.2460 -5.8107 18 6 3.6848 -2.1824 -5.6280 19 6 4.1334 -2.9271 -6.6994 20 6 3.5848 -2.7379 -7.9552 21 6 2.5793 -1.8066 -8.1442 22 6 2.1169 -1.0606 -7.0797 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3632 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.7517 -1.7715 1.2056 27 1 1.6053 -0.2616 2.1370 28 1 6.0246 -1.4983 3.1543 29 1 1.2538 0.6545 -2.5588 30 1 2.9320 0.9512 -2.0451 31 1 3.4856 -1.3556 -3.3166 32 1 1.3908 0.2770 -4.8106 33 1 4.1176 -2.3273 -4.6491 34 1 4.9178 -3.6560 -6.5583 35 1 3.9428 -3.3199 -8.7916 36 1 2.1549 -1.6640 -9.1271 37 1 1.3317 -0.3343 -7.2285 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:41 Heat of formation + Delta-G solvation = -36.521308 kcal Electronic energy + Delta-G solvation = -16572.907394 eV Core-core repulsion = 13893.351091 eV Total energy + Delta-G solvation = -2679.556302 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11632 -39.28115 -35.97429 -34.95100 -33.26221 -31.86663 -30.97646 -29.70168 -26.77593 -24.74359 -23.82971 -22.81269 -21.86597 -20.25376 -18.91959 -18.24934 -17.42133 -16.63730 -16.33330 -16.17906 -15.67970 -15.35351 -14.73060 -14.48035 -14.25590 -13.98538 -13.86008 -13.76612 -13.72670 -13.39469 -12.86280 -12.63276 -12.48226 -12.12874 -11.91899 -11.77548 -11.73104 -11.53433 -11.29265 -11.11920 -10.75234 -10.28913 -9.86496 -9.06849 -8.26615 -6.29167 -0.04964 0.49752 1.36369 1.38255 1.49697 1.50145 2.37683 2.91348 3.03601 3.13457 3.80169 3.86247 4.11030 4.14205 4.18114 4.27740 4.33193 4.41282 4.49485 4.54467 4.55745 4.62176 4.71081 4.88833 5.05693 5.06604 5.13830 5.18305 5.25680 5.35678 5.40837 5.49634 5.60949 5.64345 5.67781 5.85181 6.10544 6.28796 6.55629 6.76985 7.33035 8.90714 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028182 B = 0.004070 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.315039 B = 6878.594922 C = 7540.324065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 H 0.049 0.951 4 C -0.014 4.014 5 C -0.518 4.518 6 H 0.027 0.973 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.241 1.241 13 O -0.395 6.395 14 C 0.090 3.910 15 C -0.149 4.149 16 C -0.105 4.105 17 C -0.074 4.074 18 C -0.138 4.138 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.114 4.114 23 H 0.057 0.943 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.018 0.982 27 H 0.043 0.957 28 H 0.265 0.735 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 0.200 -19.081 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.067 0.933 4 C -0.051 4.051 5 C -0.556 4.556 6 H 0.045 0.955 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.164 1.164 13 O -0.316 6.316 14 C 0.014 3.986 15 C -0.167 4.167 16 C -0.123 4.123 17 C -0.074 4.074 18 C -0.156 4.156 19 C -0.148 4.148 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.132 4.132 23 H 0.076 0.924 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.161 0.839 33 H 0.131 0.869 34 H 0.153 0.847 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.170 -0.031 -18.984 21.537 hybrid contribution 0.570 -0.196 0.946 1.121 sum -9.600 -0.227 -18.039 20.435 Atomic orbital electron populations 1.22242 0.94221 1.02646 1.02932 1.22086 0.93718 0.95153 0.85126 0.93308 1.19719 0.94559 0.96611 0.94207 1.21337 0.92282 1.34001 1.07941 0.95506 1.26040 0.95655 0.97071 1.00884 1.70083 1.08631 1.47390 1.33511 0.85633 0.79900 0.79170 0.77771 1.19724 1.20864 1.16384 1.87958 1.87245 1.35882 1.20466 1.21491 0.99576 0.92202 0.85359 1.23116 0.99995 0.99891 0.93654 1.21758 0.99905 0.99408 0.91208 1.19238 0.96926 0.96957 0.94283 1.21552 0.97507 0.96923 0.99613 1.21363 1.00629 0.99697 0.93123 1.21581 0.96767 0.98597 0.97330 1.21479 0.97017 0.95816 0.99806 1.21563 1.00176 1.00130 0.91346 0.92362 0.90425 0.91228 0.96372 0.93900 0.92645 0.90698 0.93579 0.88075 0.83896 0.86926 0.84740 0.83555 0.83074 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 9.53 71.98 0.69 -4.28 16 2 C 0.10 3.93 2.67 30.60 0.08 4.02 16 3 H 0.05 1.98 7.79 -2.39 -0.02 1.97 16 4 C -0.01 -0.67 3.75 29.85 0.11 -0.55 16 5 C -0.52 -31.11 9.43 25.60 0.24 -30.87 16 6 H 0.03 1.79 7.99 -2.91 -0.02 1.76 16 7 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 8 N -0.95 -61.89 13.96 21.45 0.30 -61.59 16 9 Si 0.95 45.49 27.47 68.60 1.88 47.38 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 13 O -0.40 -17.01 9.72 -148.98 -1.45 -18.46 16 14 C 0.09 3.05 6.17 71.24 0.44 3.49 16 15 C -0.15 -4.71 9.31 24.54 0.23 -4.48 16 16 C -0.10 -2.68 9.51 23.66 0.22 -2.46 16 17 C -0.07 -1.85 5.87 -20.12 -0.12 -1.96 16 18 C -0.14 -3.64 9.40 22.52 0.21 -3.42 16 19 C -0.13 -2.82 10.03 22.23 0.22 -2.60 16 20 C -0.12 -2.20 10.04 22.32 0.22 -1.97 16 21 C -0.12 -2.05 10.03 22.23 0.22 -1.83 16 22 C -0.11 -2.22 9.79 22.52 0.22 -2.00 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.07 1.77 7.87 -2.39 -0.02 1.75 16 26 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 27 H 0.04 1.96 7.20 -2.38 -0.02 1.94 16 28 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 29 H 0.08 2.04 7.61 -2.39 -0.02 2.02 16 30 H 0.05 1.64 8.09 -2.39 -0.02 1.63 16 31 H 0.10 3.57 6.04 -2.91 -0.02 3.55 16 32 H 0.14 2.84 7.92 -2.91 -0.02 2.82 16 33 H 0.11 3.21 6.17 -2.91 -0.02 3.19 16 34 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -72.35 313.96 5.17 -67.18 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.97 Total: 14.00 kcal Atomic # 6 Polarization: -51.97 SS G_CDS: 3.46 Total: -48.51 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.30 Total: -61.59 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -1.45 Total: -18.46 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Total: -72.35 5.17 -67.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.663 kcal (2) G-P(sol) polarization free energy of solvation -72.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds