Wall clock time and date at job start Mon Mar 30 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99796 * 2 1 4 4 H 1.48497 * 109.47147 * 240.00385 * 3 2 1 5 5 H 1.48507 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47170 * 120.00111 * 3 2 1 7 7 C 1.37871 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00330 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99897 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47213 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46968 * 179.97438 * 11 10 9 13 13 C 1.46765 * 110.99961 * 176.00024 * 12 11 10 14 14 C 1.50686 * 110.03329 * 174.47589 * 13 12 11 15 15 C 1.38621 * 118.77194 * 163.06246 * 14 13 12 16 16 C 1.38058 * 120.28271 * 179.55468 * 15 14 13 17 17 C 1.38265 * 119.88556 * 0.03218 * 16 15 14 18 18 C 1.38060 * 119.87708 * 0.08426 * 17 16 15 19 19 C 1.37903 * 121.39693 * 342.81198 * 14 13 12 20 20 C 1.50694 * 121.39366 * 0.68898 * 19 14 13 21 21 N 1.45650 * 111.00377 * 298.95773 * 12 11 10 22 22 H 0.96998 * 120.00321 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47446 * 60.00318 * 9 7 2 24 24 H 1.09004 * 109.47426 * 300.00233 * 9 7 2 25 25 H 1.08997 * 109.47108 * 59.99501 * 10 9 7 26 26 H 1.09010 * 109.46429 * 299.99702 * 10 9 7 27 27 H 1.09006 * 109.46781 * 60.00045 * 11 10 9 28 28 H 1.08996 * 109.46889 * 299.99717 * 11 10 9 29 29 H 1.09000 * 109.37580 * 54.29985 * 13 12 11 30 30 H 1.09003 * 109.37718 * 294.64705 * 13 12 11 31 31 H 1.08001 * 119.85735 * 359.57051 * 15 14 13 32 32 H 1.07999 * 120.05841 * 180.02562 * 16 15 14 33 33 H 1.08001 * 120.06061 * 179.81568 * 17 16 15 34 34 H 1.08002 * 119.86069 * 179.97438 * 18 17 16 35 35 H 1.09006 * 109.38010 * 102.84402 * 20 19 14 36 36 H 1.08997 * 109.38202 * 222.62810 * 20 19 14 37 37 H 1.00906 * 110.99828 * 41.65983 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4351 -6.1036 -0.0018 13 6 1.7380 -7.3917 0.0931 14 6 2.7234 -8.5233 -0.0450 15 6 2.3435 -9.7924 0.3633 16 6 3.2183 -10.8536 0.2423 17 6 4.4790 -10.6502 -0.2877 18 6 4.8592 -9.3861 -0.6925 19 6 3.9820 -8.3198 -0.5705 20 6 4.4350 -6.9535 -1.0164 21 7 3.2746 -6.0720 -1.1915 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8721 -3.6042 0.8894 26 1 2.8720 -3.6042 -0.8907 27 1 0.8540 -5.0445 -0.8915 28 1 0.8535 -5.0451 0.8886 29 1 0.9949 -7.4601 -0.7013 30 1 1.2391 -7.4625 1.0597 31 1 1.3590 -9.9517 0.7776 32 1 2.9185 -11.8409 0.5612 33 1 5.1667 -11.4777 -0.3809 34 1 5.8442 -9.2275 -1.1061 35 1 5.1007 -6.5298 -0.2643 36 1 4.9677 -7.0401 -1.9634 37 1 3.5653 -5.1293 -1.4040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706381055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:23 Heat of formation + Delta-G solvation = 46.078263 kcal Electronic energy + Delta-G solvation = -17073.804881 eV Core-core repulsion = 14430.123116 eV Total energy + Delta-G solvation = -2643.681765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.88941 -37.22610 -34.18724 -33.10868 -32.16881 -30.66473 -30.01179 -26.82570 -24.72088 -24.38612 -22.43021 -21.96997 -20.06227 -19.53614 -17.00649 -16.43155 -16.04654 -15.49360 -15.04750 -14.64296 -14.52119 -14.45402 -13.84706 -13.26447 -13.14515 -12.98413 -12.48866 -12.31792 -12.00439 -11.78190 -11.40417 -11.12195 -10.95788 -10.82018 -10.59447 -10.51612 -10.08739 -9.59477 -9.38891 -9.09118 -8.88186 -8.54605 -8.34826 -7.52314 -6.00055 -4.02560 1.30303 1.31486 3.33537 3.37838 3.40177 3.51009 3.68388 4.45334 4.62376 4.67873 4.85420 4.89090 5.12405 5.32695 5.35751 5.46208 5.53904 5.62342 5.64254 5.66940 5.73640 5.91993 5.98025 5.98811 6.22324 6.40500 6.41923 6.49108 6.54317 6.67986 6.90637 6.92765 7.09989 7.34675 7.64521 7.70424 7.80649 7.99445 8.41989 9.04080 9.61507 11.11329 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.056709 B = 0.003794 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.628848 B = 7378.994464 C = 7762.379173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.047 3.953 12 N -0.382 5.382 13 C 0.093 3.907 14 C -0.064 4.064 15 C -0.119 4.119 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.120 4.120 19 C -0.067 4.067 20 C 0.099 3.901 21 N -0.542 5.542 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.903 -19.861 -0.706 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.144 4.144 11 C -0.081 4.081 12 N -0.197 5.197 13 C -0.036 4.036 14 C -0.064 4.064 15 C -0.138 4.138 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.138 4.138 19 C -0.067 4.067 20 C -0.031 4.031 21 N -0.267 5.267 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.670 -20.125 -0.636 21.211 hybrid contribution 0.426 1.334 -0.081 1.403 sum 7.096 -18.791 -0.717 20.099 Atomic orbital electron populations 1.69951 1.06059 1.26725 1.50781 1.25019 0.94847 0.99251 0.95314 0.86654 0.79578 0.83124 0.78614 1.20241 1.21296 1.20246 1.21193 0.92975 0.91043 1.50697 0.92761 1.19047 0.93922 0.91133 0.97278 1.21656 0.99380 0.93013 1.00399 1.22491 0.93966 0.90453 1.01178 1.65796 1.21985 1.02765 1.29197 1.21045 0.93915 0.87174 1.01431 1.19577 0.94597 0.94402 0.97865 1.21017 0.99829 0.92211 1.00712 1.21023 0.94253 0.98660 1.00327 1.21020 0.96607 0.96870 0.99861 1.20998 0.99334 0.92504 1.00960 1.19564 0.93734 0.95076 0.98335 1.20847 0.92038 0.89848 1.00388 1.63952 1.18689 1.15301 1.28757 0.92937 0.96582 0.96500 0.92668 0.93533 0.94077 0.90196 0.92800 0.89158 0.86090 0.86239 0.86259 0.86138 0.92954 0.89219 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.17 5.08 -26.73 -0.14 -2.31 16 11 C 0.05 0.82 5.21 -3.82 -0.02 0.80 16 12 N -0.38 -6.10 5.04 -115.16 -0.58 -6.68 16 13 C 0.09 1.30 5.59 -5.06 -0.03 1.27 16 14 C -0.06 -0.85 5.83 -104.61 -0.61 -1.46 16 15 C -0.12 -1.35 9.67 -39.51 -0.38 -1.73 16 16 C -0.12 -1.26 10.05 -39.64 -0.40 -1.65 16 17 C -0.13 -1.25 10.05 -39.64 -0.40 -1.65 16 18 C -0.12 -1.31 9.67 -39.51 -0.38 -1.69 16 19 C -0.07 -0.87 5.82 -104.61 -0.61 -1.48 16 20 C 0.10 1.27 6.68 -5.05 -0.03 1.23 16 21 N -0.54 -8.18 6.98 -11.49 -0.08 -8.26 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.05 0.92 6.30 -51.92 -0.33 0.59 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.36 5.47 6.46 -174.44 -1.13 4.35 16 LS Contribution 303.65 15.07 4.58 4.58 Total: -1.00 -30.88 303.65 -10.41 -41.29 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.49 Total: 0.37 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -3.55 Total: -21.72 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.08 Total: -41.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.88 -10.41 -41.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706381055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.365 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds