Wall clock time and date at job start Mon Mar 30 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99796 * 2 1 4 4 H 1.48497 * 109.47147 * 240.00385 * 3 2 1 5 5 H 1.48507 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47170 * 120.00111 * 3 2 1 7 7 C 1.37871 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00330 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99897 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47213 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46968 * 179.97438 * 11 10 9 13 13 C 1.46765 * 110.99961 * 176.00024 * 12 11 10 14 14 C 1.50686 * 110.03329 * 174.47589 * 13 12 11 15 15 C 1.38621 * 118.77194 * 163.06246 * 14 13 12 16 16 C 1.38058 * 120.28271 * 179.55468 * 15 14 13 17 17 C 1.38265 * 119.88556 * 0.03218 * 16 15 14 18 18 C 1.38060 * 119.87708 * 0.08426 * 17 16 15 19 19 C 1.37903 * 121.39693 * 342.81198 * 14 13 12 20 20 C 1.50694 * 121.39366 * 0.68898 * 19 14 13 21 21 N 1.45650 * 111.00377 * 298.95773 * 12 11 10 22 22 H 0.96998 * 120.00321 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47446 * 60.00318 * 9 7 2 24 24 H 1.09004 * 109.47426 * 300.00233 * 9 7 2 25 25 H 1.08997 * 109.47108 * 59.99501 * 10 9 7 26 26 H 1.09010 * 109.46429 * 299.99702 * 10 9 7 27 27 H 1.09006 * 109.46781 * 60.00045 * 11 10 9 28 28 H 1.08996 * 109.46889 * 299.99717 * 11 10 9 29 29 H 1.09000 * 109.37580 * 54.29985 * 13 12 11 30 30 H 1.09003 * 109.37718 * 294.64705 * 13 12 11 31 31 H 1.08001 * 119.85735 * 359.57051 * 15 14 13 32 32 H 1.07999 * 120.05841 * 180.02562 * 16 15 14 33 33 H 1.08001 * 120.06061 * 179.81568 * 17 16 15 34 34 H 1.08002 * 119.86069 * 179.97438 * 18 17 16 35 35 H 1.09006 * 109.38010 * 102.84402 * 20 19 14 36 36 H 1.08997 * 109.38202 * 222.62810 * 20 19 14 37 37 H 1.00906 * 110.99828 * 41.65983 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4351 -6.1036 -0.0018 13 6 1.7380 -7.3917 0.0931 14 6 2.7234 -8.5233 -0.0450 15 6 2.3435 -9.7924 0.3633 16 6 3.2183 -10.8536 0.2423 17 6 4.4790 -10.6502 -0.2877 18 6 4.8592 -9.3861 -0.6925 19 6 3.9820 -8.3198 -0.5705 20 6 4.4350 -6.9535 -1.0164 21 7 3.2746 -6.0720 -1.1915 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8721 -3.6042 0.8894 26 1 2.8720 -3.6042 -0.8907 27 1 0.8540 -5.0445 -0.8915 28 1 0.8535 -5.0451 0.8886 29 1 0.9949 -7.4601 -0.7013 30 1 1.2391 -7.4625 1.0597 31 1 1.3590 -9.9517 0.7776 32 1 2.9185 -11.8409 0.5612 33 1 5.1667 -11.4777 -0.3809 34 1 5.8442 -9.2275 -1.1061 35 1 5.1007 -6.5298 -0.2643 36 1 4.9677 -7.0401 -1.9634 37 1 3.5653 -5.1293 -1.4040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706381055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:23 Heat of formation + Delta-G solvation = 27.838642 kcal Electronic energy + Delta-G solvation = -17074.595810 eV Core-core repulsion = 14430.123116 eV Total energy + Delta-G solvation = -2644.472694 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81645 -38.39627 -35.92674 -34.43579 -33.61361 -31.97689 -31.06920 -28.51021 -25.89604 -25.71093 -23.82310 -23.06624 -21.70974 -20.54316 -18.58513 -17.81281 -17.40672 -16.63780 -16.44894 -16.01919 -15.77121 -15.52089 -15.10122 -14.52511 -14.42854 -14.03508 -13.99106 -13.55401 -13.43011 -13.10970 -12.98612 -12.63973 -12.47668 -12.43380 -11.91914 -11.80883 -11.62059 -11.41125 -11.14231 -11.02244 -10.54766 -9.71834 -9.43743 -8.73155 -8.20124 -6.31294 0.45973 0.48210 1.40336 1.43398 1.51266 2.31101 2.41964 2.84878 3.13202 3.53729 3.78564 3.95301 4.08320 4.18319 4.26077 4.37251 4.47442 4.50789 4.61122 4.63324 4.67497 4.71445 4.81380 4.94437 4.98302 5.12074 5.13330 5.23809 5.47616 5.54846 5.59480 5.62333 5.65356 5.73504 5.84026 6.11762 6.18848 6.24793 6.46930 6.85145 7.37966 8.91655 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.056709 B = 0.003794 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.628848 B = 7378.994464 C = 7762.379173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.089 4.089 11 C 0.059 3.941 12 N -0.388 5.388 13 C 0.093 3.907 14 C -0.090 4.090 15 C -0.127 4.127 16 C -0.126 4.126 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.091 4.091 20 C 0.098 3.902 21 N -0.550 5.550 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.006 1.006 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.032 0.968 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.049 0.951 36 H 0.110 0.890 37 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.574 -21.141 -0.695 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.127 4.127 11 C -0.069 4.069 12 N -0.203 5.203 13 C -0.035 4.035 14 C -0.091 4.091 15 C -0.145 4.145 16 C -0.143 4.143 17 C -0.143 4.143 18 C -0.143 4.143 19 C -0.091 4.091 20 C -0.031 4.031 21 N -0.275 5.275 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.012 0.988 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.153 0.847 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.067 0.933 36 H 0.127 0.873 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.354 -21.431 -0.624 23.010 hybrid contribution -0.087 1.627 -0.089 1.632 sum 8.267 -19.804 -0.713 21.472 Atomic orbital electron populations 1.70086 1.07806 1.27864 1.51609 1.25979 0.95769 1.03371 0.94698 0.85501 0.78274 0.78077 0.79198 1.19104 1.20850 1.19212 1.21651 0.93543 0.92343 1.50660 0.92180 1.18931 0.94299 0.92797 0.94925 1.21370 0.98168 0.92651 1.00516 1.22217 0.93762 0.89950 1.00941 1.65735 1.21649 1.03032 1.29867 1.21079 0.94127 0.86577 1.01696 1.19664 0.94885 0.94885 0.99660 1.21250 1.00906 0.91811 1.00553 1.21404 0.94053 0.99475 0.99409 1.21426 0.97033 0.97290 0.98538 1.21270 0.99883 0.92384 1.00730 1.19738 0.94337 0.95605 0.99429 1.20957 0.91178 0.89595 1.01374 1.64004 1.19738 1.15323 1.28389 0.92747 0.98985 0.98805 0.92970 0.92851 0.94945 0.89940 0.93521 0.88237 0.84651 0.83562 0.83435 0.84139 0.93307 0.87254 0.82410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.44 0.28 -56.96 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.50 4.97 29.85 0.15 1.64 16 10 C -0.09 -3.70 5.08 30.60 0.16 -3.55 16 11 C 0.06 2.13 5.21 86.30 0.45 2.58 16 12 N -0.39 -12.39 5.04 -518.26 -2.61 -15.00 16 13 C 0.09 2.60 5.59 85.58 0.48 3.08 16 14 C -0.09 -2.33 5.83 -19.86 -0.12 -2.45 16 15 C -0.13 -2.65 9.67 22.32 0.22 -2.43 16 16 C -0.13 -2.17 10.05 22.23 0.22 -1.95 16 17 C -0.13 -2.10 10.05 22.23 0.22 -1.88 16 18 C -0.12 -2.44 9.67 22.32 0.22 -2.22 16 19 C -0.09 -2.25 5.82 -19.86 -0.12 -2.36 16 20 C 0.10 2.44 6.68 85.58 0.57 3.01 16 21 N -0.55 -16.49 6.98 -190.26 -1.33 -17.82 16 22 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 23 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 24 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.05 2.13 6.30 -2.38 -0.01 2.12 16 27 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.05 1.34 8.12 -2.39 -0.02 1.32 16 30 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.36 10.81 6.46 -204.66 -1.32 9.49 16 Total: -1.00 -66.41 303.65 1.24 -65.17 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -0.28 Total: 15.19 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 3.15 Total: -37.07 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -3.65 Total: -89.79 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -66.41 1.24 -65.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706381055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.008 kcal (2) G-P(sol) polarization free energy of solvation -66.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds