Wall clock time and date at job start Mon Mar 30 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00084 * 2 1 4 4 H 1.48498 * 109.47191 * 240.00514 * 3 2 1 5 5 H 1.48501 * 109.47223 * 120.00185 * 3 2 1 6 6 H 1.48504 * 109.46757 * 0.02562 * 3 2 1 7 7 C 1.37878 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00384 * 174.13107 * 7 2 1 9 9 C 1.50707 * 119.99352 * 354.12285 * 7 2 1 10 10 H 1.08995 * 108.90070 * 3.23225 * 9 7 2 11 11 C 1.54292 * 108.91369 * 121.79796 * 9 7 2 12 12 C 1.50466 * 113.03312 * 162.41806 * 11 9 7 13 13 C 1.54500 * 108.85411 * 267.84650 * 12 11 9 14 14 C 1.45863 * 111.59297 * 77.19075 * 13 12 11 15 15 N 1.47797 * 112.91885 * 298.67410 * 14 13 12 16 16 C 1.44274 * 109.46363 * 83.25681 * 15 14 13 17 17 H 1.08999 * 108.98083 * 24.21066 * 16 15 14 18 18 C 1.50698 * 108.97995 * 142.91984 * 16 15 14 19 19 C 1.38678 * 120.42052 * 216.19835 * 18 16 15 20 20 C 1.38623 * 118.41814 * 180.02562 * 19 18 16 21 21 C 1.38230 * 119.16733 * 0.02562 * 20 19 18 22 22 N 1.31853 * 120.76014 * 359.97438 * 21 20 19 23 23 C 1.31886 * 121.72452 * 359.71130 * 22 21 20 24 24 H 0.96999 * 119.99562 * 185.51758 * 1 2 3 25 25 H 1.08997 * 108.77217 * 283.33466 * 11 9 7 26 26 H 1.08998 * 108.77496 * 41.50386 * 11 9 7 27 27 H 1.08997 * 109.57103 * 148.03410 * 12 11 9 28 28 H 1.09003 * 109.67425 * 27.72316 * 12 11 9 29 29 H 1.08994 * 109.05828 * 316.64773 * 13 12 11 30 30 H 1.09000 * 108.99890 * 197.69667 * 13 12 11 31 31 H 1.09002 * 108.79925 * 177.78146 * 14 13 12 32 32 H 1.09004 * 108.70039 * 59.49792 * 14 13 12 33 33 H 1.00897 * 111.00306 * 320.38512 * 15 14 13 34 34 H 1.07998 * 120.78659 * 0.02562 * 19 18 16 35 35 H 1.08001 * 120.41592 * 179.97438 * 20 19 18 36 36 H 1.07998 * 119.62025 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.61462 * 180.31197 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 3.1030 1.6964 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0046 -1.1940 -0.0005 8 1 3.0804 -1.1964 -0.0962 9 6 1.2570 -2.4958 0.1325 10 1 0.1874 -2.2876 0.1588 11 6 1.5632 -3.3763 -1.0969 12 6 1.2246 -4.8265 -0.8814 13 6 2.4784 -5.5587 -0.3533 14 6 2.7033 -5.2857 1.0618 15 7 2.9346 -3.8531 1.3419 16 6 1.6665 -3.1742 1.4538 17 1 0.9005 -3.8977 1.7330 18 6 1.7648 -2.1267 2.5327 19 6 0.6807 -1.8629 3.3561 20 6 0.8167 -0.8905 4.3346 21 6 2.0196 -0.2204 4.4559 22 7 3.0297 -0.4975 3.6550 23 6 2.9381 -1.4204 2.7172 24 1 -0.4849 -0.8362 0.0808 25 1 0.9897 -3.0047 -1.9461 26 1 2.6246 -3.2951 -1.3310 27 1 0.9117 -5.2725 -1.8254 28 1 0.4183 -4.9107 -0.1527 29 1 3.3483 -5.2301 -0.9218 30 1 2.3474 -6.6319 -0.4923 31 1 3.5719 -5.8535 1.3953 32 1 1.8306 -5.6171 1.6246 33 1 3.5079 -3.4326 0.6259 34 1 -0.2475 -2.4023 3.2379 35 1 -0.0072 -0.6587 4.9934 36 1 2.1335 0.5389 5.2154 37 1 3.7886 -1.6233 2.0832 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709963072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:51 Heat of formation + Delta-G solvation = 10.470094 kcal Electronic energy + Delta-G solvation = -18820.917636 eV Core-core repulsion = 16175.691785 eV Total energy + Delta-G solvation = -2645.225851 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.25746 -39.70184 -35.74612 -34.49897 -33.08603 -32.58465 -30.87508 -27.43360 -26.30036 -25.11915 -23.99647 -23.00848 -21.97867 -20.57134 -18.58269 -17.81730 -17.07696 -16.68788 -16.37217 -15.80478 -15.70775 -15.25490 -15.20824 -14.52529 -14.11122 -13.97046 -13.76659 -13.68552 -13.47639 -12.87962 -12.70043 -12.39336 -12.34640 -12.13002 -12.04805 -11.59185 -11.23925 -11.16246 -10.59020 -10.43631 -10.34616 -10.13037 -9.47012 -9.18936 -8.47968 -6.13751 0.56184 0.64060 1.46043 1.55958 1.68413 2.53601 3.15890 3.29750 3.49657 3.81102 3.83509 4.06654 4.14069 4.21821 4.27907 4.35982 4.41051 4.52946 4.60026 4.63328 4.84854 4.88706 4.95309 4.97847 5.04810 5.15711 5.22171 5.26547 5.36843 5.40655 5.52718 5.61752 5.68291 6.07210 6.12390 6.28463 6.39730 6.58985 6.80168 7.32763 7.57754 8.91033 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.011663 C = 0.008618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.734736 B = 2400.235470 C = 3248.347364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.008 4.008 3 Si 1.074 2.926 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.294 1.294 7 C -0.566 4.566 8 H 0.043 0.957 9 C 0.006 3.994 10 H 0.016 0.984 11 C -0.100 4.100 12 C -0.117 4.117 13 C -0.140 4.140 14 C 0.054 3.946 15 N -0.669 5.669 16 C 0.145 3.855 17 H 0.057 0.943 18 C -0.073 4.073 19 C -0.104 4.104 20 C -0.176 4.176 21 C 0.060 3.940 22 N -0.520 5.520 23 C 0.131 3.869 24 H 0.259 0.741 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.341 0.659 34 H 0.128 0.872 35 H 0.154 0.846 36 H 0.171 0.829 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.679 -9.152 4.039 10.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.207 4.207 3 Si 0.900 3.100 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.220 1.220 7 C -0.604 4.604 8 H 0.061 0.939 9 C -0.015 4.015 10 H 0.034 0.966 11 C -0.139 4.139 12 C -0.155 4.155 13 C -0.179 4.179 14 C -0.074 4.074 15 N -0.298 5.298 16 C 0.033 3.967 17 H 0.075 0.925 18 C -0.076 4.076 19 C -0.130 4.130 20 C -0.196 4.196 21 C -0.096 4.096 22 N -0.229 5.229 23 C -0.026 4.026 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.171 0.829 36 H 0.189 0.811 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.374 -7.142 4.760 9.222 hybrid contribution -1.228 -1.571 -1.297 2.379 sum 2.146 -8.713 3.462 9.618 Atomic orbital electron populations 1.70935 1.07712 1.30333 1.49309 1.26318 0.96381 1.04496 0.93537 0.83466 0.74825 0.73999 0.77683 1.19805 1.20324 1.21993 1.21900 0.94056 0.92224 1.52230 0.93895 1.19973 0.96403 0.94218 0.90887 0.96587 1.21370 1.00035 0.94458 0.97989 1.21448 0.98135 0.94947 1.00944 1.21189 0.97521 1.01540 0.97648 1.20979 1.02117 0.88964 0.95388 1.60956 1.14430 1.02946 1.51472 1.20260 0.91093 0.92120 0.93233 0.92484 1.20742 0.94084 0.97771 0.94956 1.21555 0.98251 0.98150 0.95061 1.22197 0.99664 0.97577 1.00138 1.22986 0.89412 0.99196 0.98015 1.67582 1.33266 1.16132 1.05969 1.22196 0.97298 0.90113 0.92949 0.92819 0.95670 0.93467 0.91523 0.92885 0.92079 0.89579 0.89808 0.91894 0.84083 0.85388 0.82881 0.81147 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.55 13.65 21.45 0.29 -55.26 16 2 C -0.01 -0.42 5.45 84.65 0.46 0.04 16 3 Si 1.07 51.83 29.91 68.60 2.05 53.88 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 7 C -0.57 -28.62 5.29 25.60 0.14 -28.48 16 8 H 0.04 2.20 7.58 -2.91 -0.02 2.17 16 9 C 0.01 0.25 2.31 -10.74 -0.02 0.23 16 10 H 0.02 0.81 5.58 -2.39 -0.01 0.80 16 11 C -0.10 -3.87 4.65 30.21 0.14 -3.73 16 12 C -0.12 -3.49 5.59 30.28 0.17 -3.32 16 13 C -0.14 -3.43 5.36 28.92 0.15 -3.28 16 14 C 0.05 1.42 5.87 83.94 0.49 1.92 16 15 N -0.67 -22.38 5.57 -508.90 -2.84 -25.21 16 16 C 0.15 5.58 1.96 45.02 0.09 5.67 16 17 H 0.06 2.11 6.41 -2.39 -0.02 2.09 16 18 C -0.07 -3.03 4.25 -19.77 -0.08 -3.12 16 19 C -0.10 -4.04 9.83 22.47 0.22 -3.82 16 20 C -0.18 -6.19 10.11 22.36 0.23 -5.97 16 21 C 0.06 2.21 11.18 84.69 0.95 3.16 16 22 N -0.52 -22.24 10.36 -195.84 -2.03 -24.27 16 23 C 0.13 5.69 8.94 84.67 0.76 6.44 16 24 H 0.26 15.26 6.24 -92.71 -0.58 14.68 16 25 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.63 7.16 -2.39 -0.02 1.61 16 29 H 0.06 1.52 7.59 -2.39 -0.02 1.50 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.64 7.24 -2.38 -0.02 1.62 16 33 H 0.34 12.01 7.01 -89.70 -0.63 11.38 16 34 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 35 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 36 H 0.17 4.98 8.06 -2.91 -0.02 4.96 16 37 H 0.14 6.01 7.25 -2.91 -0.02 5.99 16 Total: -1.00 -61.28 287.01 1.79 -59.49 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.63 Total: 25.61 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 3.68 Total: -34.24 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -4.57 Total: -104.74 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.05 Total: 53.88 kcal Total: -61.28 1.79 -59.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709963072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.960 kcal (2) G-P(sol) polarization free energy of solvation -61.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds