Wall clock time and date at job start Mon Mar 30 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00145 * 2 1 4 4 H 1.48507 * 109.46965 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47526 * 119.99601 * 3 2 1 6 6 H 1.48501 * 109.47012 * 239.99821 * 3 2 1 7 7 C 1.37874 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00002 * 187.47100 * 7 2 1 9 9 C 1.50702 * 120.00189 * 7.47637 * 7 2 1 10 10 H 1.09002 * 108.89502 * 5.24318 * 9 7 2 11 11 C 1.54293 * 108.91985 * 246.59107 * 9 7 2 12 12 C 1.50389 * 113.06990 * 197.48277 * 11 9 7 13 13 C 1.54508 * 108.77478 * 92.26791 * 12 11 9 14 14 C 1.45860 * 111.58977 * 282.82492 * 13 12 11 15 15 N 1.47797 * 112.92115 * 61.32212 * 14 13 12 16 16 C 1.44266 * 109.46495 * 276.74282 * 15 14 13 17 17 H 1.09005 * 108.97766 * 335.78706 * 16 15 14 18 18 C 1.50704 * 108.98033 * 217.07872 * 16 15 14 19 19 C 1.38648 * 120.79107 * 323.59177 * 18 16 15 20 20 C 1.38204 * 119.16452 * 179.75215 * 19 18 16 21 21 N 1.31869 * 120.76215 * 0.53482 * 20 19 18 22 22 C 1.31871 * 121.72631 * 359.73344 * 21 20 19 23 23 C 1.38207 * 120.76528 * 359.97438 * 22 21 20 24 24 H 0.97002 * 120.00430 * 175.28784 * 1 2 3 25 25 H 1.09008 * 108.76812 * 318.49409 * 11 9 7 26 26 H 1.08999 * 108.77381 * 76.65553 * 11 9 7 27 27 H 1.09000 * 109.60470 * 332.48741 * 12 11 9 28 28 H 1.09001 * 109.73285 * 212.12414 * 12 11 9 29 29 H 1.09004 * 109.06059 * 162.27714 * 13 12 11 30 30 H 1.08996 * 109.05322 * 43.36355 * 13 12 11 31 31 H 1.09000 * 108.79247 * 300.43192 * 14 13 12 32 32 H 1.09005 * 108.79011 * 182.21173 * 14 13 12 33 33 H 1.00899 * 111.00015 * 39.61637 * 15 14 13 34 34 H 1.08003 * 120.41533 * 359.97438 * 19 18 16 35 35 H 1.07994 * 119.61730 * 180.29076 * 20 19 18 36 36 H 1.07998 * 119.61831 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.42081 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0776 -1.1979 0.1221 9 6 1.2606 -2.4937 -0.1687 10 1 0.2114 -2.2764 -0.3688 11 6 1.3628 -3.3028 1.1411 12 6 1.0308 -4.7586 0.9618 13 6 2.3355 -5.5343 0.6731 14 6 2.7763 -5.3492 -0.7049 15 7 3.0747 -3.9384 -1.0291 16 6 1.8514 -3.2545 -1.3710 17 1 1.1224 -3.9856 -1.7209 18 6 2.1313 -2.2748 -2.4814 19 6 3.3300 -1.5796 -2.5290 20 6 3.5536 -0.6930 -3.5654 21 7 2.6390 -0.4975 -4.4950 22 6 1.4858 -1.1370 -4.4785 23 6 1.1941 -2.0432 -3.4766 24 1 -0.4851 -0.8372 -0.0690 25 1 2.3788 -3.2186 1.5270 26 1 0.6761 -2.8756 1.8718 27 1 0.3430 -4.8765 0.1245 28 1 0.5695 -5.1455 1.8705 29 1 2.1657 -6.5959 0.8529 30 1 3.1160 -5.1810 1.3469 31 1 1.9937 -5.7055 -1.3747 32 1 3.6742 -5.9449 -0.8694 33 1 3.5416 -3.4816 -0.2601 34 1 4.0809 -1.7317 -1.7678 35 1 4.4866 -0.1512 -3.6122 36 1 0.7612 -0.9510 -5.2575 37 1 0.2481 -2.5641 -3.4688 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709964283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:52 Heat of formation + Delta-G solvation = 9.395034 kcal Electronic energy + Delta-G solvation = -18759.192947 eV Core-core repulsion = 16113.920478 eV Total energy + Delta-G solvation = -2645.272469 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25727 -39.76438 -35.78585 -34.69660 -32.94488 -31.91971 -31.48511 -27.46281 -26.48123 -25.09932 -23.96627 -23.02578 -21.99453 -20.61104 -18.66799 -17.57199 -17.08422 -16.53292 -16.27530 -15.83126 -15.75107 -15.66155 -15.24751 -14.53262 -14.29997 -14.09092 -13.74468 -13.70843 -13.36936 -12.79379 -12.67779 -12.49809 -12.18231 -12.11706 -12.01155 -11.60518 -11.36804 -11.20286 -10.59541 -10.40176 -10.15895 -10.04401 -9.76883 -9.24151 -8.49938 -6.14972 0.48356 0.68955 1.48151 1.55865 1.69665 2.55450 3.13165 3.28296 3.44914 3.75839 3.79855 4.04241 4.14672 4.15659 4.25376 4.41390 4.45084 4.51758 4.58380 4.60127 4.82708 4.89040 4.93196 4.94102 5.05125 5.11003 5.20430 5.24168 5.30381 5.37889 5.50548 5.65409 5.72856 6.06084 6.10279 6.27952 6.37228 6.56997 6.77552 7.23119 7.57777 8.89923 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017924 B = 0.011787 C = 0.008456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.800186 B = 2374.861330 C = 3310.321857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.017 4.017 3 Si 1.081 2.919 4 H -0.298 1.298 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.564 4.564 8 H 0.050 0.950 9 C 0.007 3.993 10 H 0.013 0.987 11 C -0.100 4.100 12 C -0.118 4.118 13 C -0.140 4.140 14 C 0.054 3.946 15 N -0.666 5.666 16 C 0.140 3.860 17 H 0.058 0.942 18 C 0.012 3.988 19 C -0.124 4.124 20 C 0.065 3.935 21 N -0.518 5.518 22 C 0.078 3.922 23 C -0.194 4.194 24 H 0.258 0.742 25 H 0.048 0.952 26 H 0.021 0.979 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.342 0.658 34 H 0.130 0.870 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 -9.709 -2.050 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.216 4.216 3 Si 0.906 3.094 4 H -0.225 1.225 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.603 4.603 8 H 0.068 0.932 9 C -0.014 4.014 10 H 0.031 0.969 11 C -0.138 4.138 12 C -0.156 4.156 13 C -0.179 4.179 14 C -0.075 4.075 15 N -0.295 5.295 16 C 0.028 3.972 17 H 0.076 0.924 18 C 0.003 3.997 19 C -0.144 4.144 20 C -0.090 4.090 21 N -0.228 5.228 22 C -0.079 4.079 23 C -0.215 4.215 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.182 0.818 36 H 0.186 0.814 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.411 -7.615 -3.318 9.913 hybrid contribution -0.944 -1.671 1.754 2.600 sum 4.467 -9.286 -1.565 10.422 Atomic orbital electron populations 1.70946 1.07987 1.30252 1.49574 1.26517 0.96357 1.05067 0.93615 0.83384 0.74733 0.73363 0.77881 1.22463 1.19463 1.19814 1.21932 0.94618 0.92028 1.51672 0.93153 1.19947 0.95991 0.94412 0.91045 0.96905 1.21379 0.99829 0.94484 0.98129 1.21447 0.97986 0.94890 1.01244 1.21187 0.96847 1.01422 0.98415 1.20980 1.01451 0.89546 0.95521 1.60951 1.21581 1.02856 1.44085 1.20313 0.91089 0.92668 0.93104 0.92351 1.20270 0.92747 0.94141 0.92512 1.21785 0.98227 0.96263 0.98109 1.22942 0.98610 0.96501 0.90935 1.67556 1.03095 1.24608 1.27583 1.22830 0.94322 0.92778 0.97971 1.22065 1.00479 1.02063 0.96854 0.93009 0.93353 0.96052 0.92961 0.91631 0.89597 0.92017 0.91941 0.89660 0.83948 0.85163 0.81812 0.81438 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.26 13.65 21.45 0.29 -55.96 16 2 C -0.02 -0.92 5.45 84.65 0.46 -0.45 16 3 Si 1.08 50.35 29.91 68.60 2.05 52.41 16 4 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.56 -27.94 5.46 25.60 0.14 -27.80 16 8 H 0.05 2.46 7.04 -2.91 -0.02 2.44 16 9 C 0.01 0.29 2.25 -10.74 -0.02 0.27 16 10 H 0.01 0.65 5.70 -2.39 -0.01 0.64 16 11 C -0.10 -3.86 4.64 30.19 0.14 -3.72 16 12 C -0.12 -3.53 5.60 30.26 0.17 -3.36 16 13 C -0.14 -3.38 5.36 28.92 0.15 -3.23 16 14 C 0.05 1.37 5.87 83.94 0.49 1.87 16 15 N -0.67 -21.42 5.64 -508.92 -2.87 -24.29 16 16 C 0.14 5.26 1.97 45.02 0.09 5.35 16 17 H 0.06 2.13 6.42 -2.38 -0.02 2.12 16 18 C 0.01 0.49 4.27 -19.67 -0.08 0.40 16 19 C -0.12 -4.87 7.81 22.36 0.17 -4.69 16 20 C 0.07 2.50 11.18 84.68 0.95 3.44 16 21 N -0.52 -20.56 10.36 -195.85 -2.03 -22.59 16 22 C 0.08 2.91 11.18 84.68 0.95 3.86 16 23 C -0.19 -7.53 9.79 22.36 0.22 -7.32 16 24 H 0.26 15.35 6.29 -92.71 -0.58 14.77 16 25 H 0.05 1.84 6.61 -2.38 -0.02 1.83 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 1.61 7.15 -2.39 -0.02 1.60 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.51 7.58 -2.39 -0.02 1.49 16 31 H 0.06 1.60 7.24 -2.39 -0.02 1.58 16 32 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.34 11.55 6.99 -89.69 -0.63 10.92 16 34 H 0.13 4.91 7.11 -2.91 -0.02 4.89 16 35 H 0.16 5.24 8.06 -2.91 -0.02 5.22 16 36 H 0.17 5.11 8.06 -2.91 -0.02 5.09 16 37 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -60.63 286.58 1.90 -58.73 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.62 Total: 27.09 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 3.83 Total: -35.38 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -4.60 Total: -102.85 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.41 kcal Total: -60.63 1.90 -58.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709964283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.129 kcal (2) G-P(sol) polarization free energy of solvation -60.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds