Wall clock time and date at job start Mon Mar 30 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47455 * 2 1 4 4 H 1.09003 * 115.56243 * 29.31027 * 3 2 1 5 5 C 1.52998 * 117.50228 * 243.62405 * 3 2 1 6 6 C 1.52998 * 117.50227 * 174.99670 * 3 2 1 7 7 H 1.09002 * 117.51246 * 0.02562 * 6 3 2 8 8 C 1.52997 * 117.50279 * 214.97624 * 6 3 2 9 9 O 1.42895 * 109.47272 * 174.98447 * 8 6 3 10 10 C 1.35679 * 117.00371 * 180.02562 * 9 8 6 11 11 C 1.39317 * 119.81190 * 359.72965 * 10 9 8 12 12 C 1.36436 * 120.18100 * 179.75918 * 11 10 9 13 13 C 1.40836 * 119.81217 * 0.51042 * 12 11 10 14 14 C 1.41216 * 120.17745 * 179.71679 * 13 12 11 15 15 H 1.07996 * 119.99297 * 155.16925 * 14 13 12 16 16 C 1.39886 * 120.00317 * 335.16997 * 14 13 12 17 17 N 1.30877 * 120.00117 * 342.16028 * 16 14 13 18 18 Si 1.86798 * 120.00078 * 162.15594 * 16 14 13 19 19 H 1.48502 * 109.47167 * 94.65442 * 18 16 14 20 20 H 1.48493 * 109.47107 * 214.65680 * 18 16 14 21 21 H 1.48505 * 109.47121 * 334.65947 * 18 16 14 22 22 C 1.40838 * 119.64094 * 359.74439 * 13 12 11 23 23 C 1.36436 * 119.80872 * 359.97438 * 22 13 12 24 24 H 1.09003 * 109.46833 * 60.00037 * 1 2 3 25 25 H 1.09005 * 109.47491 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47378 * 300.00397 * 1 2 3 27 27 H 1.09007 * 109.46878 * 239.99761 * 2 1 3 28 28 H 1.09003 * 109.46833 * 119.99963 * 2 1 3 29 29 H 1.08995 * 117.50261 * 145.01846 * 5 3 2 30 30 H 1.09006 * 117.49585 * 359.97438 * 5 3 2 31 31 H 1.08995 * 109.47109 * 294.99039 * 8 6 3 32 32 H 1.09007 * 109.46697 * 54.99001 * 8 6 3 33 33 H 1.07998 * 119.90994 * 0.02562 * 11 10 9 34 34 H 1.08003 * 120.09394 * 180.25093 * 12 11 10 35 35 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 36 36 H 1.07996 * 120.09194 * 180.02562 * 22 13 12 37 37 H 1.08004 * 119.90474 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8440 1.9075 -1.2158 6 6 3.5502 1.6578 0.1184 7 1 4.1806 0.7719 0.1958 8 6 4.0301 2.8803 0.9032 9 8 5.4552 2.8516 1.0050 10 6 6.0454 3.8721 1.6767 11 6 5.2622 4.8865 2.2229 12 6 5.8475 5.9137 2.9040 13 6 7.2483 5.9522 3.0447 14 6 7.8626 7.0148 3.7430 15 1 8.8314 6.8728 4.1987 16 6 7.2164 8.2513 3.8444 17 7 6.2376 8.5472 3.0275 18 14 7.7503 9.4802 5.1460 19 1 8.7280 10.4308 4.5579 20 1 6.5650 10.2289 5.6356 21 1 8.3824 8.7579 6.2791 22 6 8.0331 4.9254 2.4849 23 6 7.4316 3.9024 1.8118 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.7214 2.9426 -1.5343 30 1 3.0099 1.1856 -2.0156 31 1 3.7210 3.7885 0.3859 32 1 3.5941 2.8648 1.9021 33 1 4.1885 4.8575 2.1106 34 1 5.2386 6.6972 3.3304 35 1 5.7897 9.4047 3.0975 36 1 9.1078 4.9475 2.5888 37 1 8.0320 3.1144 1.3814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723130162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:02 Heat of formation + Delta-G solvation = -14.148902 kcal Electronic energy + Delta-G solvation = -16749.603684 eV Core-core repulsion = 14071.017522 eV Total energy + Delta-G solvation = -2678.586162 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.01758 -37.85659 -36.14799 -33.34337 -32.31474 -29.63590 -29.24060 -27.01419 -24.61571 -23.90000 -21.59596 -20.90907 -20.35535 -19.94119 -17.33141 -16.87736 -15.67550 -15.16164 -14.95393 -14.53980 -14.40276 -13.92517 -13.69167 -12.85386 -12.73048 -12.42553 -12.23605 -12.03740 -11.83024 -11.57565 -11.40838 -11.20375 -11.15108 -11.01515 -10.82434 -10.63986 -10.10185 -9.94630 -9.77508 -9.59633 -9.33813 -8.97669 -7.63088 -6.98285 -6.71002 -4.23091 2.78797 2.98602 3.09061 3.13460 3.23191 3.62414 3.96481 4.07610 4.63586 4.72426 4.81962 4.94977 5.04180 5.20161 5.40201 5.46883 5.59988 5.68285 5.76319 5.78619 5.83284 5.89666 5.94687 5.98889 6.14171 6.19852 6.30267 6.32013 6.76764 6.91795 7.08834 7.30172 7.44113 7.58345 7.93510 8.02304 8.17919 8.48055 8.67991 8.92162 9.01891 10.23872 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042498 B = 0.003870 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.704065 B = 7232.842248 C = 7638.685146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.146 4.146 4 H 0.105 0.895 5 C -0.173 4.173 6 C -0.144 4.144 7 H 0.112 0.888 8 C 0.099 3.901 9 O -0.328 6.328 10 C -0.007 4.007 11 C -0.174 4.174 12 C -0.134 4.134 13 C 0.087 3.913 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.075 3.925 17 N -0.801 5.801 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.196 4.196 23 C -0.114 4.114 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.279 0.721 36 H 0.100 0.900 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 -9.608 -4.134 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.164 4.164 4 H 0.123 0.877 5 C -0.210 4.210 6 C -0.162 4.162 7 H 0.130 0.870 8 C 0.023 3.977 9 O -0.244 6.244 10 C -0.050 4.050 11 C -0.193 4.193 12 C -0.153 4.153 13 C 0.085 3.915 14 C -0.494 4.494 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.427 5.427 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.216 4.216 23 C -0.133 4.133 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.689 -9.566 -4.282 13.614 hybrid contribution -0.010 0.921 0.540 1.068 sum -8.699 -8.645 -3.742 12.822 Atomic orbital electron populations 1.21748 0.95529 1.01425 1.01946 1.21118 0.95842 0.94101 1.02037 1.22483 0.93108 0.98155 1.02663 0.87730 1.23237 1.03865 1.02407 0.91513 1.22247 0.94361 1.00147 0.99480 0.87023 1.21929 0.81522 0.95668 0.98538 1.85778 1.19331 1.45948 1.73342 1.18578 0.92148 0.90599 1.03724 1.20617 0.97419 0.96953 1.04332 1.20936 0.95212 0.97530 1.01645 1.17594 0.91557 0.91891 0.90490 1.19458 1.04498 0.95015 1.30405 0.90514 1.25871 0.94037 0.99160 0.95103 1.69841 1.19513 1.22418 1.30937 0.86340 0.79004 0.80001 0.81593 1.19662 1.20146 1.18492 1.20599 0.97908 0.98101 1.04966 1.19611 0.90880 0.99575 1.03201 0.92662 0.92822 0.92632 0.91866 0.91547 0.88707 0.88789 0.93037 0.92845 0.88825 0.86174 0.91044 0.88215 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.87 37.16 0.37 -0.83 16 2 C -0.09 -0.87 6.21 -26.73 -0.17 -1.03 16 3 C -0.15 -1.61 5.46 -90.63 -0.49 -2.11 16 4 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 5 C -0.17 -2.02 9.82 -26.73 -0.26 -2.28 16 6 C -0.14 -1.97 5.78 -90.62 -0.52 -2.50 16 7 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 8 C 0.10 1.70 5.01 37.16 0.19 1.88 16 9 O -0.33 -6.97 10.12 -18.74 -0.19 -7.16 16 10 C -0.01 -0.17 6.71 -38.78 -0.26 -0.43 16 11 C -0.17 -4.21 8.96 -39.83 -0.36 -4.56 16 12 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 13 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 14 C -0.46 -12.45 9.04 -37.83 -0.34 -12.79 16 15 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 16 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 17 N -0.80 -20.95 10.97 55.54 0.61 -20.34 16 18 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 C -0.20 -4.92 9.74 -39.25 -0.38 -5.31 16 23 C -0.11 -2.72 9.92 -39.83 -0.40 -3.11 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.55 7.88 -51.93 -0.41 0.15 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 30 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 31 H 0.05 0.88 7.37 -51.93 -0.38 0.50 16 32 H 0.05 0.90 7.66 -51.93 -0.40 0.50 16 33 H 0.09 2.02 6.27 -52.49 -0.33 1.69 16 34 H 0.12 3.25 6.18 -52.48 -0.32 2.93 16 35 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 36 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 37 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -28.14 310.40 -9.19 -37.33 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.60 Total: 5.06 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: -3.65 Total: -33.37 kcal Atomic # 7 Polarization: -20.95 SS G_CDS: 0.61 Total: -20.34 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.19 Total: -7.16 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.14 -9.19 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723130162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.185 kcal (2) G-P(sol) polarization free energy of solvation -28.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds