Wall clock time and date at job start Mon Mar 30 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47455 * 2 1 4 4 H 1.09003 * 115.56243 * 29.31027 * 3 2 1 5 5 C 1.52998 * 117.50228 * 243.62405 * 3 2 1 6 6 C 1.52998 * 117.50227 * 174.99670 * 3 2 1 7 7 H 1.09002 * 117.51246 * 0.02562 * 6 3 2 8 8 C 1.52997 * 117.50279 * 214.97624 * 6 3 2 9 9 O 1.42895 * 109.47272 * 174.98447 * 8 6 3 10 10 C 1.35679 * 117.00371 * 180.02562 * 9 8 6 11 11 C 1.39317 * 119.81190 * 359.72965 * 10 9 8 12 12 C 1.36436 * 120.18100 * 179.75918 * 11 10 9 13 13 C 1.40836 * 119.81217 * 0.51042 * 12 11 10 14 14 C 1.41216 * 120.17745 * 179.71679 * 13 12 11 15 15 H 1.07996 * 119.99297 * 155.16925 * 14 13 12 16 16 C 1.39886 * 120.00317 * 335.16997 * 14 13 12 17 17 N 1.30877 * 120.00117 * 342.16028 * 16 14 13 18 18 Si 1.86798 * 120.00078 * 162.15594 * 16 14 13 19 19 H 1.48502 * 109.47167 * 94.65442 * 18 16 14 20 20 H 1.48493 * 109.47107 * 214.65680 * 18 16 14 21 21 H 1.48505 * 109.47121 * 334.65947 * 18 16 14 22 22 C 1.40838 * 119.64094 * 359.74439 * 13 12 11 23 23 C 1.36436 * 119.80872 * 359.97438 * 22 13 12 24 24 H 1.09003 * 109.46833 * 60.00037 * 1 2 3 25 25 H 1.09005 * 109.47491 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47378 * 300.00397 * 1 2 3 27 27 H 1.09007 * 109.46878 * 239.99761 * 2 1 3 28 28 H 1.09003 * 109.46833 * 119.99963 * 2 1 3 29 29 H 1.08995 * 117.50261 * 145.01846 * 5 3 2 30 30 H 1.09006 * 117.49585 * 359.97438 * 5 3 2 31 31 H 1.08995 * 109.47109 * 294.99039 * 8 6 3 32 32 H 1.09007 * 109.46697 * 54.99001 * 8 6 3 33 33 H 1.07998 * 119.90994 * 0.02562 * 11 10 9 34 34 H 1.08003 * 120.09394 * 180.25093 * 12 11 10 35 35 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 36 36 H 1.07996 * 120.09194 * 180.02562 * 22 13 12 37 37 H 1.08004 * 119.90474 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8440 1.9075 -1.2158 6 6 3.5502 1.6578 0.1184 7 1 4.1806 0.7719 0.1958 8 6 4.0301 2.8803 0.9032 9 8 5.4552 2.8516 1.0050 10 6 6.0454 3.8721 1.6767 11 6 5.2622 4.8865 2.2229 12 6 5.8475 5.9137 2.9040 13 6 7.2483 5.9522 3.0447 14 6 7.8626 7.0148 3.7430 15 1 8.8314 6.8728 4.1987 16 6 7.2164 8.2513 3.8444 17 7 6.2376 8.5472 3.0275 18 14 7.7503 9.4802 5.1460 19 1 8.7280 10.4308 4.5579 20 1 6.5650 10.2289 5.6356 21 1 8.3824 8.7579 6.2791 22 6 8.0331 4.9254 2.4849 23 6 7.4316 3.9024 1.8118 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.7214 2.9426 -1.5343 30 1 3.0099 1.1856 -2.0156 31 1 3.7210 3.7885 0.3859 32 1 3.5941 2.8648 1.9021 33 1 4.1885 4.8575 2.1106 34 1 5.2386 6.6972 3.3304 35 1 5.7897 9.4047 3.0975 36 1 9.1078 4.9475 2.5888 37 1 8.0320 3.1144 1.3814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723130162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:02 Heat of formation + Delta-G solvation = -26.820384 kcal Electronic energy + Delta-G solvation = -16750.153161 eV Core-core repulsion = 14071.017522 eV Total energy + Delta-G solvation = -2679.135639 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63396 -39.11959 -37.84310 -35.23000 -33.14399 -31.56546 -31.10917 -28.43658 -26.48566 -24.66676 -23.28306 -22.58126 -21.48425 -21.22550 -19.27801 -18.60633 -17.24906 -16.72444 -16.38101 -15.80495 -15.56730 -15.44531 -14.96231 -14.61215 -14.20172 -13.86703 -13.69637 -13.52514 -13.16100 -12.94200 -12.83384 -12.74900 -12.38908 -12.21118 -12.14309 -11.89261 -11.76990 -11.64983 -11.24066 -10.94968 -10.86035 -10.64375 -9.58583 -8.92173 -8.60914 -6.23485 0.92381 1.02958 1.39606 1.49445 1.55766 2.22700 2.41552 2.71619 2.87896 3.68889 3.74034 3.84667 3.95119 4.18903 4.26889 4.32106 4.33361 4.46707 4.53300 4.58355 4.66856 4.82775 4.89269 4.94611 5.00691 5.13966 5.15610 5.20043 5.22386 5.30423 5.35721 5.49692 5.51972 5.65543 5.96205 6.05244 6.22294 6.55312 6.78445 6.94240 7.08948 8.36287 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042498 B = 0.003870 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.704065 B = 7232.842248 C = 7638.685146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.129 4.129 4 H 0.107 0.893 5 C -0.167 4.167 6 C -0.164 4.164 7 H 0.110 0.890 8 C 0.094 3.906 9 O -0.334 6.334 10 C -0.004 4.004 11 C -0.177 4.177 12 C -0.155 4.155 13 C 0.055 3.945 14 C -0.499 4.499 15 H 0.077 0.923 16 C 0.033 3.967 17 N -0.832 5.832 18 Si 0.983 3.017 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.205 4.205 23 C -0.121 4.121 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.287 0.713 36 H 0.112 0.888 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 -10.220 -4.392 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.147 4.147 4 H 0.125 0.875 5 C -0.204 4.204 6 C -0.182 4.182 7 H 0.128 0.872 8 C 0.019 3.981 9 O -0.250 6.250 10 C -0.047 4.047 11 C -0.196 4.196 12 C -0.175 4.175 13 C 0.053 3.947 14 C -0.529 4.529 15 H 0.095 0.905 16 C -0.181 4.181 17 N -0.459 5.459 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.224 4.224 23 C -0.139 4.139 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.456 -10.200 -4.557 14.636 hybrid contribution 0.161 1.001 0.524 1.141 sum -9.295 -9.199 -4.032 13.685 Atomic orbital electron populations 1.21738 0.94445 1.02271 1.02043 1.21156 0.96742 0.92725 1.02454 1.22595 0.91145 0.99440 1.01502 0.87535 1.23337 1.02802 1.02889 0.91390 1.22158 0.96227 0.98671 1.01165 0.87169 1.22184 0.79200 0.97438 0.99274 1.85783 1.21815 1.44832 1.72604 1.18729 0.92430 0.90721 1.02859 1.20807 0.98655 0.96435 1.03687 1.20907 0.95178 0.98233 1.03161 1.17962 0.92241 0.92975 0.91534 1.19724 1.05220 0.96101 1.31858 0.90484 1.26746 0.93835 1.00702 0.96770 1.69892 1.20431 1.23407 1.32147 0.85190 0.78866 0.77249 0.78369 1.18779 1.19123 1.18263 1.20819 0.98597 0.98087 1.04929 1.19907 0.91460 0.99806 1.02767 0.92379 0.91658 0.92750 0.91065 0.91574 0.88891 0.87152 0.93251 0.92783 0.86775 0.87553 0.90241 0.87017 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.87 71.98 0.71 -1.28 16 2 C -0.09 -1.51 6.21 30.59 0.19 -1.32 16 3 C -0.13 -2.58 5.46 -10.80 -0.06 -2.64 16 4 H 0.11 2.11 8.08 -2.39 -0.02 2.09 16 5 C -0.17 -3.55 9.82 30.60 0.30 -3.25 16 6 C -0.16 -4.25 5.78 -10.79 -0.06 -4.31 16 7 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 8 C 0.09 3.14 5.01 71.98 0.36 3.50 16 9 O -0.33 -13.93 10.12 -89.97 -0.91 -14.85 16 10 C 0.00 -0.17 6.71 22.79 0.15 -0.02 16 11 C -0.18 -8.61 8.96 22.11 0.20 -8.41 16 12 C -0.16 -8.42 8.64 22.48 0.19 -8.22 16 13 C 0.05 3.06 5.57 -21.28 -0.12 2.94 16 14 C -0.50 -27.39 9.04 23.40 0.21 -27.18 16 15 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 16 C 0.03 1.70 5.13 85.23 0.44 2.14 16 17 N -0.83 -44.21 10.97 21.82 0.24 -43.97 16 18 Si 0.98 38.63 29.60 68.60 2.03 40.66 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 C -0.20 -10.39 9.74 22.49 0.22 -10.17 16 23 C -0.12 -5.72 9.92 22.11 0.22 -5.50 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 1.05 7.88 -2.38 -0.02 1.03 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 2.02 8.03 -2.39 -0.02 2.00 16 30 H 0.11 1.98 8.03 -2.38 -0.02 1.96 16 31 H 0.05 1.65 7.37 -2.39 -0.02 1.63 16 32 H 0.05 1.77 7.66 -2.38 -0.02 1.75 16 33 H 0.11 4.92 6.27 -2.91 -0.02 4.90 16 34 H 0.11 5.96 6.18 -2.91 -0.02 5.95 16 35 H 0.29 13.75 8.30 -92.71 -0.77 12.99 16 36 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 37 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -60.35 310.40 5.35 -55.00 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 1.04 Total: 26.90 kcal Atomic # 6 Polarization: -66.69 SS G_CDS: 2.96 Total: -63.74 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.24 Total: -43.97 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.91 Total: -14.85 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -60.35 5.35 -55.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723130162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.181 kcal (2) G-P(sol) polarization free energy of solvation -60.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds