Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37933 * 120.07560 * 2 1 4 4 C 1.38377 * 120.15014 * 180.29532 * 3 2 1 5 5 C 1.38359 * 120.31776 * 359.69820 * 4 3 2 6 6 C 1.37935 * 120.16047 * 0.04507 * 5 4 3 7 7 C 1.50701 * 120.08622 * 179.97438 * 6 5 4 8 8 C 1.39679 * 120.07987 * 179.76194 * 2 1 3 9 9 C 1.47489 * 120.15742 * 0.02562 * 8 2 1 10 10 N 1.29743 * 120.00167 * 173.97931 * 9 8 2 11 11 N 1.40106 * 119.99859 * 180.02562 * 10 9 8 12 12 C 1.46502 * 119.99714 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47277 * 29.99852 * 12 11 10 14 14 C 1.53001 * 109.47433 * 270.00131 * 12 11 10 15 15 C 1.50700 * 109.47042 * 149.99753 * 12 11 10 16 16 H 1.07995 * 119.99923 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99942 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00216 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99849 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47223 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47056 * 299.99915 * 19 17 15 22 22 H 1.48508 * 109.47160 * 59.99806 * 19 17 15 23 23 H 1.08998 * 109.47142 * 264.75708 * 1 2 3 24 24 H 1.08993 * 109.47500 * 24.76220 * 1 2 3 25 25 H 1.09009 * 109.46754 * 144.76353 * 1 2 3 26 26 H 1.07993 * 119.92635 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.83477 * 179.71744 * 4 3 2 28 28 H 1.08003 * 119.92533 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.46833 * 263.05130 * 7 6 5 30 30 H 1.09006 * 109.46469 * 23.04327 * 7 6 5 31 31 H 1.08989 * 109.47238 * 143.04685 * 7 6 5 32 32 H 1.07998 * 120.00065 * 353.97959 * 9 8 2 33 33 H 0.96997 * 120.00572 * 359.97438 * 11 10 9 34 34 H 1.08991 * 109.47375 * 180.02562 * 14 12 11 35 35 H 1.09003 * 109.46661 * 300.00098 * 14 12 11 36 36 H 1.09000 * 109.47010 * 59.99551 * 14 12 11 37 37 H 0.96996 * 120.00358 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5820 1.1954 -0.0062 5 6 4.2820 0.0020 -0.0061 6 6 3.6039 -1.1992 -0.0008 7 6 4.3680 -2.4981 -0.0013 8 6 2.2071 -1.2087 0.0050 9 6 1.4749 -2.4890 0.0098 10 7 2.1229 -3.6073 -0.1034 11 7 1.4273 -4.8235 -0.0995 12 6 2.1590 -6.0862 -0.2278 13 1 3.1539 -5.9751 0.2035 14 6 2.2830 -6.4557 -1.7074 15 6 1.4141 -7.1747 0.5011 16 1 0.4882 -6.9486 1.0088 17 6 1.9149 -8.4592 0.5198 18 7 3.0422 -8.7347 -0.0989 19 14 0.9912 -9.8086 1.4228 20 1 1.7329 -11.0885 1.2928 21 1 0.8699 -9.4499 2.8587 22 1 -0.3638 -9.9602 0.8342 23 1 -0.3633 -0.0939 1.0233 24 1 -0.3634 0.9331 -0.4304 25 1 -0.3633 -0.8395 -0.5930 26 1 1.6583 2.1289 -0.0004 27 1 4.1181 2.1330 -0.0108 28 1 5.3620 0.0108 -0.0105 29 1 4.4408 -2.8763 -1.0209 30 1 5.3690 -2.3308 0.3965 31 1 3.8471 -3.2263 0.6201 32 1 0.3994 -2.4957 0.1075 33 1 0.4613 -4.8295 -0.0117 34 1 2.8269 -7.3953 -1.8029 35 1 1.2881 -6.5668 -2.1387 36 1 2.8217 -5.6683 -2.2346 37 1 3.3947 -9.6382 -0.0854 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755802617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = 58.400100 kcal Electronic energy + Delta-G solvation = -17156.537761 eV Core-core repulsion = 14513.390310 eV Total energy + Delta-G solvation = -2643.147450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.37545 -36.40265 -34.19114 -33.32253 -32.16530 -30.52256 -27.85012 -26.58892 -26.39936 -25.22968 -22.73438 -20.46428 -20.29489 -19.87377 -17.02629 -16.32084 -15.76276 -15.01651 -14.61327 -14.31011 -14.00653 -13.65372 -13.00092 -12.86748 -12.68631 -12.53997 -12.49029 -12.29584 -11.60272 -11.42413 -11.34628 -11.11636 -10.96204 -10.89408 -10.75010 -10.57578 -10.25589 -10.22428 -9.22507 -8.96300 -8.67362 -8.47187 -8.32554 -6.76846 -6.15451 -4.24005 1.29169 1.61366 3.07410 3.24293 3.29196 3.30623 3.79765 4.12344 4.35163 4.98121 5.01561 5.16323 5.18128 5.23063 5.39257 5.64151 5.67498 5.72666 5.84324 6.02354 6.10133 6.20381 6.33106 6.35841 6.49991 6.68063 6.74308 6.78040 6.97182 7.03121 7.06154 7.13890 7.29471 7.55440 7.75213 7.84471 8.13111 8.28930 8.83465 9.30464 9.42964 10.90243 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038306 B = 0.004554 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.781533 B = 6147.555478 C = 6542.820444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.114 4.114 8 C -0.014 4.014 9 C -0.018 4.018 10 N -0.185 5.185 11 N -0.627 5.627 12 C 0.298 3.702 13 H 0.042 0.958 14 C -0.150 4.150 15 C -0.532 4.532 16 H 0.059 0.941 17 C 0.068 3.932 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.367 0.633 34 H 0.090 0.910 35 H 0.025 0.975 36 H 0.012 0.988 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 15.715 -0.285 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.062 4.062 7 C -0.171 4.171 8 C -0.017 4.017 9 C -0.224 4.224 10 N 0.002 4.998 11 N -0.363 5.363 12 C 0.195 3.805 13 H 0.060 0.940 14 C -0.209 4.209 15 C -0.571 4.571 16 H 0.077 0.923 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.211 1.211 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.203 0.797 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.031 0.969 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.206 14.888 -0.449 14.896 hybrid contribution -1.704 -0.495 0.541 1.855 sum -1.910 14.392 0.092 14.519 Atomic orbital electron populations 1.20778 0.91501 1.02463 1.02247 1.19835 0.95682 0.92124 1.00425 1.20786 0.94162 0.96896 1.03008 1.21052 0.94200 0.97662 1.01398 1.20946 0.99527 0.91949 1.02305 1.20165 0.92879 0.95752 0.97408 1.21102 0.97986 0.94520 1.03465 1.18196 0.91967 0.90718 1.00773 1.23539 0.96607 0.90383 1.11877 1.74266 1.27665 0.93593 1.04267 1.49223 1.06671 1.00843 1.79520 1.18526 0.92803 0.76517 0.92614 0.94048 1.22202 0.99309 1.01597 0.97828 1.21201 1.08896 0.93275 1.33753 0.92289 1.24850 0.95016 0.98371 0.95315 1.69873 1.19399 1.20889 1.42170 0.86491 0.79700 0.80680 0.80140 1.21058 1.20176 1.20185 0.91306 0.91905 0.91308 0.86511 0.86642 0.86414 0.91074 0.93330 0.88222 0.87982 0.79713 0.89177 0.95570 0.96855 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.34 36.01 0.34 -0.89 16 2 C -0.08 -1.05 5.92 -104.20 -0.62 -1.67 16 3 C -0.13 -1.57 9.67 -39.64 -0.38 -1.95 16 4 C -0.12 -1.48 10.04 -39.49 -0.40 -1.88 16 5 C -0.13 -1.74 9.66 -39.65 -0.38 -2.12 16 6 C -0.06 -0.94 5.92 -104.19 -0.62 -1.56 16 7 C -0.11 -1.88 8.61 36.01 0.31 -1.57 16 8 C -0.01 -0.23 5.87 -105.05 -0.62 -0.84 16 9 C -0.02 -0.31 10.06 -14.67 -0.15 -0.45 16 10 N -0.18 -3.71 7.43 32.16 0.24 -3.48 16 11 N -0.63 -13.72 6.10 -5.88 -0.04 -13.76 16 12 C 0.30 7.49 3.23 -69.08 -0.22 7.26 16 13 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.15 -3.67 9.29 37.16 0.35 -3.32 16 15 C -0.53 -14.18 8.74 -34.44 -0.30 -14.48 16 16 H 0.06 1.54 7.78 -52.49 -0.41 1.13 16 17 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 18 N -0.89 -24.48 11.32 55.43 0.63 -23.85 16 19 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.56 8.05 -51.93 -0.42 0.14 16 25 H 0.07 0.76 6.72 -51.92 -0.35 0.41 16 26 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.12 1.35 8.05 -52.48 -0.42 0.93 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.69 8.04 -51.93 -0.42 0.28 16 31 H 0.10 1.90 5.68 -51.94 -0.29 1.61 16 32 H 0.10 1.60 6.56 -52.49 -0.34 1.25 16 33 H 0.37 7.50 8.58 -182.59 -1.57 5.93 16 34 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 308.03 15.07 4.64 4.64 Total: -1.00 -27.85 308.03 -8.97 -36.82 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.63 Total: 5.75 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -2.79 Total: -21.76 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.83 Total: -41.08 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.85 -8.97 -36.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755802617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.216 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds