Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37933 * 120.07560 * 2 1 4 4 C 1.38377 * 120.15014 * 180.29532 * 3 2 1 5 5 C 1.38359 * 120.31776 * 359.69820 * 4 3 2 6 6 C 1.37935 * 120.16047 * 0.04507 * 5 4 3 7 7 C 1.50701 * 120.08622 * 179.97438 * 6 5 4 8 8 C 1.39679 * 120.07987 * 179.76194 * 2 1 3 9 9 C 1.47489 * 120.15742 * 0.02562 * 8 2 1 10 10 N 1.29743 * 120.00167 * 173.97931 * 9 8 2 11 11 N 1.40106 * 119.99859 * 180.02562 * 10 9 8 12 12 C 1.46502 * 119.99714 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47277 * 29.99852 * 12 11 10 14 14 C 1.53001 * 109.47433 * 270.00131 * 12 11 10 15 15 C 1.50700 * 109.47042 * 149.99753 * 12 11 10 16 16 H 1.07995 * 119.99923 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99942 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00216 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99849 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47223 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.47056 * 299.99915 * 19 17 15 22 22 H 1.48508 * 109.47160 * 59.99806 * 19 17 15 23 23 H 1.08998 * 109.47142 * 264.75708 * 1 2 3 24 24 H 1.08993 * 109.47500 * 24.76220 * 1 2 3 25 25 H 1.09009 * 109.46754 * 144.76353 * 1 2 3 26 26 H 1.07993 * 119.92635 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.83477 * 179.71744 * 4 3 2 28 28 H 1.08003 * 119.92533 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.46833 * 263.05130 * 7 6 5 30 30 H 1.09006 * 109.46469 * 23.04327 * 7 6 5 31 31 H 1.08989 * 109.47238 * 143.04685 * 7 6 5 32 32 H 1.07998 * 120.00065 * 353.97959 * 9 8 2 33 33 H 0.96997 * 120.00572 * 359.97438 * 11 10 9 34 34 H 1.08991 * 109.47375 * 180.02562 * 14 12 11 35 35 H 1.09003 * 109.46661 * 300.00098 * 14 12 11 36 36 H 1.09000 * 109.47010 * 59.99551 * 14 12 11 37 37 H 0.96996 * 120.00358 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5820 1.1954 -0.0062 5 6 4.2820 0.0020 -0.0061 6 6 3.6039 -1.1992 -0.0008 7 6 4.3680 -2.4981 -0.0013 8 6 2.2071 -1.2087 0.0050 9 6 1.4749 -2.4890 0.0098 10 7 2.1229 -3.6073 -0.1034 11 7 1.4273 -4.8235 -0.0995 12 6 2.1590 -6.0862 -0.2278 13 1 3.1539 -5.9751 0.2035 14 6 2.2830 -6.4557 -1.7074 15 6 1.4141 -7.1747 0.5011 16 1 0.4882 -6.9486 1.0088 17 6 1.9149 -8.4592 0.5198 18 7 3.0422 -8.7347 -0.0989 19 14 0.9912 -9.8086 1.4228 20 1 1.7329 -11.0885 1.2928 21 1 0.8699 -9.4499 2.8587 22 1 -0.3638 -9.9602 0.8342 23 1 -0.3633 -0.0939 1.0233 24 1 -0.3634 0.9331 -0.4304 25 1 -0.3633 -0.8395 -0.5930 26 1 1.6583 2.1289 -0.0004 27 1 4.1181 2.1330 -0.0108 28 1 5.3620 0.0108 -0.0105 29 1 4.4408 -2.8763 -1.0209 30 1 5.3690 -2.3308 0.3965 31 1 3.8471 -3.2263 0.6201 32 1 0.3994 -2.4957 0.1075 33 1 0.4613 -4.8295 -0.0117 34 1 2.8269 -7.3953 -1.8029 35 1 1.2881 -6.5668 -2.1387 36 1 2.8217 -5.6683 -2.2346 37 1 3.3947 -9.6382 -0.0854 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755802617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = 43.995838 kcal Electronic energy + Delta-G solvation = -17157.162376 eV Core-core repulsion = 14513.390310 eV Total energy + Delta-G solvation = -2643.772066 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47461 -37.99095 -35.94029 -34.38463 -33.73639 -32.08011 -29.28325 -27.98817 -27.42564 -27.25919 -24.06846 -22.21697 -21.45840 -21.16573 -18.78085 -17.75782 -17.18078 -16.74312 -15.83157 -15.59487 -15.24552 -15.11386 -14.46568 -14.28659 -14.01686 -13.88489 -13.72286 -13.52885 -13.30121 -12.91706 -12.77795 -12.68342 -12.52331 -12.36994 -12.19782 -12.11435 -11.96094 -11.79531 -11.13398 -10.59650 -10.44050 -9.87423 -9.37316 -8.35253 -8.16449 -6.35056 0.14530 0.56655 1.42471 1.44144 1.52090 1.78798 2.19036 2.47706 3.01525 3.10952 3.92277 3.98177 4.04820 4.21538 4.42426 4.52759 4.67061 4.73009 4.74657 4.87848 4.91319 4.94507 4.99725 5.05646 5.11795 5.14775 5.20335 5.36079 5.47317 5.58554 5.65226 5.71700 5.81505 5.83372 5.93710 6.19313 6.21737 6.42527 6.84825 7.36567 7.77817 8.86833 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038306 B = 0.004554 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.781533 B = 6147.555478 C = 6542.820444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.111 4.111 5 C -0.139 4.139 6 C -0.077 4.077 7 C -0.108 4.108 8 C -0.054 4.054 9 C 0.016 3.984 10 N -0.225 5.225 11 N -0.645 5.645 12 C 0.309 3.691 13 H 0.002 0.998 14 C -0.135 4.135 15 C -0.549 4.549 16 H 0.060 0.940 17 C 0.020 3.980 18 N -0.914 5.914 19 Si 0.969 3.031 20 H -0.281 1.281 21 H -0.273 1.273 22 H -0.268 1.268 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.135 0.865 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.370 0.630 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.016 0.984 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 18.405 0.133 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.130 4.130 5 C -0.157 4.157 6 C -0.080 4.080 7 C -0.165 4.165 8 C -0.056 4.056 9 C -0.193 4.193 10 N -0.035 5.035 11 N -0.382 5.382 12 C 0.205 3.795 13 H 0.020 0.980 14 C -0.195 4.195 15 C -0.589 4.589 16 H 0.078 0.922 17 C -0.180 4.180 18 N -0.552 5.552 19 Si 0.794 3.206 20 H -0.206 1.206 21 H -0.199 1.199 22 H -0.193 1.193 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.169 0.831 27 H 0.168 0.832 28 H 0.153 0.847 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.207 0.793 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.218 17.595 -0.034 17.637 hybrid contribution -1.352 -0.988 0.420 1.726 sum -2.570 16.607 0.386 16.809 Atomic orbital electron populations 1.20855 0.89690 1.03627 1.02942 1.20189 0.97132 0.91624 0.98787 1.21237 0.94476 0.97608 1.01498 1.21518 0.94538 0.98364 0.98554 1.21198 1.00648 0.91626 1.02195 1.20243 0.93136 0.96064 0.98528 1.20949 0.98846 0.94757 1.01930 1.18375 0.92357 0.90864 1.04007 1.24110 0.97695 0.90437 1.07011 1.74396 1.27835 0.93569 1.07728 1.48720 1.06384 1.00737 1.82323 1.18084 0.91100 0.78024 0.92250 0.98012 1.22013 0.99042 1.00516 0.97887 1.21501 1.09107 0.94121 1.34125 0.92187 1.25690 0.95776 1.00570 0.95984 1.70003 1.20661 1.21395 1.43120 0.85447 0.78630 0.77716 0.78824 1.20586 1.19851 1.19313 0.90416 0.89346 0.91951 0.83079 0.83181 0.84685 0.92720 0.91647 0.91121 0.86357 0.79281 0.91273 0.95246 0.96461 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.34 71.24 0.67 -1.45 16 2 C -0.07 -1.80 5.92 -19.59 -0.12 -1.91 16 3 C -0.13 -2.56 9.67 22.23 0.21 -2.35 16 4 C -0.11 -2.19 10.04 22.33 0.22 -1.97 16 5 C -0.14 -3.40 9.66 22.23 0.21 -3.18 16 6 C -0.08 -2.40 5.92 -19.59 -0.12 -2.51 16 7 C -0.11 -3.72 8.61 71.24 0.61 -3.10 16 8 C -0.05 -1.67 5.87 -20.14 -0.12 -1.79 16 9 C 0.02 0.55 10.06 87.44 0.88 1.43 16 10 N -0.23 -9.46 7.43 -52.17 -0.39 -9.85 16 11 N -0.65 -29.53 6.10 -172.51 -1.05 -30.58 16 12 C 0.31 16.37 3.23 44.24 0.14 16.52 16 13 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 14 C -0.14 -6.91 9.29 71.98 0.67 -6.24 16 15 C -0.55 -30.17 8.74 25.60 0.22 -29.95 16 16 H 0.06 3.20 7.78 -2.91 -0.02 3.17 16 17 C 0.02 1.10 5.30 84.66 0.45 1.55 16 18 N -0.91 -51.99 11.32 21.45 0.24 -51.75 16 19 Si 0.97 42.75 29.54 68.60 2.03 44.77 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.09 1.19 8.05 -2.39 -0.02 1.17 16 25 H 0.06 1.23 6.72 -2.38 -0.02 1.22 16 26 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 27 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 28 H 0.14 2.75 8.05 -2.91 -0.02 2.73 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.92 8.04 -2.38 -0.02 1.90 16 31 H 0.07 2.88 5.68 -2.39 -0.01 2.87 16 32 H 0.12 3.63 6.56 -2.91 -0.02 3.61 16 33 H 0.37 15.68 8.58 -213.32 -1.83 13.85 16 34 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -62.22 308.03 4.00 -58.22 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.77 Total: 24.14 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 3.95 Total: -34.96 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -1.20 Total: -92.18 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -62.22 4.00 -58.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755802617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.216 kcal (2) G-P(sol) polarization free energy of solvation -62.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds