Wall clock time and date at job start Mon Mar 30 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37938 * 120.07672 * 2 1 4 4 C 1.38364 * 120.15559 * 180.29919 * 3 2 1 5 5 C 1.38367 * 120.31475 * 359.69772 * 4 3 2 6 6 C 1.37929 * 120.15711 * 0.04726 * 5 4 3 7 7 C 1.50702 * 120.08007 * 179.97438 * 6 5 4 8 8 C 1.39676 * 120.08370 * 179.76426 * 2 1 3 9 9 C 1.47500 * 120.15300 * 0.02562 * 8 2 1 10 10 N 1.29742 * 119.99578 * 173.80563 * 9 8 2 11 11 N 1.40101 * 119.99531 * 179.97438 * 10 9 8 12 12 C 1.46505 * 119.99940 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.46763 * 329.99938 * 12 11 10 14 14 C 1.52999 * 109.47257 * 89.99997 * 12 11 10 15 15 C 1.50697 * 109.46957 * 210.00092 * 12 11 10 16 16 H 1.08001 * 120.00525 * 354.91966 * 15 12 11 17 17 C 1.37880 * 119.99624 * 174.91865 * 15 12 11 18 18 N 1.31506 * 120.00263 * 354.53882 * 17 15 12 19 19 Si 1.86803 * 119.99702 * 174.80752 * 17 15 12 20 20 H 1.48500 * 109.47458 * 264.76419 * 19 17 15 21 21 H 1.48499 * 109.46930 * 24.76837 * 19 17 15 22 22 H 1.48505 * 109.47063 * 144.76357 * 19 17 15 23 23 H 1.09004 * 109.47057 * 264.57520 * 1 2 3 24 24 H 1.08996 * 109.47424 * 24.57978 * 1 2 3 25 25 H 1.09004 * 109.46913 * 144.57979 * 1 2 3 26 26 H 1.08003 * 119.91847 * 359.97438 * 3 2 1 27 27 H 1.08001 * 119.84132 * 179.72501 * 4 3 2 28 28 H 1.08007 * 119.92050 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.46957 * 263.79269 * 7 6 5 30 30 H 1.09001 * 109.47355 * 23.79166 * 7 6 5 31 31 H 1.09000 * 109.47269 * 143.79452 * 7 6 5 32 32 H 1.07998 * 120.00058 * 353.80334 * 9 8 2 33 33 H 0.97006 * 120.00251 * 0.02562 * 11 10 9 34 34 H 1.08997 * 109.46947 * 177.59443 * 14 12 11 35 35 H 1.09002 * 109.47114 * 297.59465 * 14 12 11 36 36 H 1.08998 * 109.47075 * 57.59376 * 14 12 11 37 37 H 0.97004 * 120.00275 * 180.27369 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1937 0.0000 4 6 3.5819 1.1956 -0.0062 5 6 4.2820 0.0021 -0.0062 6 6 3.6039 -1.1990 -0.0010 7 6 4.3681 -2.4979 -0.0015 8 6 2.2072 -1.2086 0.0050 9 6 1.4750 -2.4890 0.0097 10 7 2.1227 -3.6071 -0.1070 11 7 1.4273 -4.8233 -0.1020 12 6 2.1587 -6.0859 -0.2331 13 1 3.0588 -5.9244 -0.8263 14 6 2.5479 -6.5965 1.1557 15 6 1.2833 -7.1049 -0.9159 16 1 0.2560 -6.8657 -1.1477 17 6 1.7940 -8.3428 -1.2446 18 7 3.0711 -8.5971 -1.0610 19 14 0.6732 -9.6560 -1.9579 20 1 0.1931 -10.5426 -0.8677 21 1 -0.4891 -9.0094 -2.6183 22 1 1.4248 -10.4600 -2.9550 23 1 -0.3633 -0.0972 1.0231 24 1 -0.3634 0.9345 -0.4274 25 1 -0.3633 -0.8375 -0.5956 26 1 1.6582 2.1289 -0.0004 27 1 4.1180 2.1331 -0.0107 28 1 5.3620 0.0110 -0.0107 29 1 4.4523 -2.8694 -1.0228 30 1 5.3646 -2.3334 0.4085 31 1 3.8402 -3.2303 0.6092 32 1 0.3997 -2.4958 0.1102 33 1 0.4615 -4.8294 -0.0117 34 1 3.0546 -7.5569 1.0608 35 1 3.2157 -5.8790 1.6326 36 1 1.6509 -6.7173 1.7629 37 1 3.4312 -9.4666 -1.2960 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755802618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:13 Heat of formation + Delta-G solvation = 57.243107 kcal Electronic energy + Delta-G solvation = -17155.494480 eV Core-core repulsion = 14512.296859 eV Total energy + Delta-G solvation = -2643.197621 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.37491 -36.40504 -34.16940 -33.31961 -32.15842 -30.56527 -27.87129 -26.62618 -26.39747 -25.20553 -22.73635 -20.47945 -20.30589 -19.87286 -17.03249 -16.32483 -15.75963 -15.02198 -14.59707 -14.29922 -14.00517 -13.64623 -12.98217 -12.87124 -12.69828 -12.55993 -12.46423 -12.31647 -11.71210 -11.42249 -11.34180 -11.11387 -10.96272 -10.83475 -10.78943 -10.60884 -10.35146 -10.18186 -9.21545 -8.98478 -8.66800 -8.47761 -8.32389 -6.77518 -6.16996 -4.23363 1.29337 1.61578 3.07293 3.22803 3.29935 3.32260 3.79825 4.12530 4.35353 4.98313 5.01809 5.16927 5.17828 5.22993 5.39623 5.64147 5.67811 5.72694 5.84478 6.02471 6.10186 6.20647 6.33252 6.36063 6.50170 6.68029 6.71740 6.75476 6.90828 7.02883 7.04275 7.08494 7.29456 7.53209 7.73144 7.75855 8.13008 8.25849 8.84566 9.30265 9.42868 10.90643 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037767 B = 0.004587 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.202959 B = 6102.714308 C = 6552.003942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.129 4.129 6 C -0.059 4.059 7 C -0.115 4.115 8 C -0.014 4.014 9 C -0.017 4.017 10 N -0.184 5.184 11 N -0.627 5.627 12 C 0.296 3.704 13 H 0.047 0.953 14 C -0.145 4.145 15 C -0.532 4.532 16 H 0.060 0.940 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.274 1.274 22 H -0.284 1.284 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.367 0.633 34 H 0.077 0.923 35 H 0.015 0.985 36 H 0.027 0.973 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 15.508 2.725 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.062 4.062 7 C -0.172 4.172 8 C -0.017 4.017 9 C -0.224 4.224 10 N 0.002 4.998 11 N -0.363 5.363 12 C 0.193 3.807 13 H 0.065 0.935 14 C -0.205 4.205 15 C -0.571 4.571 16 H 0.078 0.922 17 C -0.135 4.135 18 N -0.522 5.522 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.199 1.199 22 H -0.210 1.210 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.203 0.797 34 H 0.095 0.905 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.163 14.695 2.567 14.918 hybrid contribution -1.771 -0.511 -0.243 1.859 sum -1.934 14.184 2.323 14.503 Atomic orbital electron populations 1.20780 0.91496 1.02509 1.02213 1.19837 0.95684 0.92122 1.00408 1.20786 0.94163 0.96899 1.03010 1.21051 0.94200 0.97663 1.01388 1.20947 0.99528 0.91952 1.02313 1.20159 0.92878 0.95752 0.97395 1.21121 0.97990 0.94548 1.03519 1.18196 0.91966 0.90720 1.00788 1.23546 0.96606 0.90385 1.11834 1.74269 1.27629 0.93599 1.04259 1.49212 1.06646 1.00852 1.79545 1.18536 0.92872 0.76566 0.92694 0.93465 1.22145 0.98680 1.01391 0.98268 1.21214 0.97935 0.98171 1.39771 0.92231 1.24856 0.95091 0.98295 0.95263 1.69940 1.11749 1.22984 1.47555 0.86454 0.80514 0.81436 0.78838 1.20549 1.19860 1.21025 0.91339 0.91897 0.91270 0.86512 0.86642 0.86415 0.90980 0.93353 0.88216 0.87975 0.79735 0.90472 0.96540 0.95389 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.33 36.01 0.34 -0.89 16 2 C -0.08 -1.05 5.92 -104.19 -0.62 -1.66 16 3 C -0.13 -1.57 9.67 -39.64 -0.38 -1.95 16 4 C -0.12 -1.48 10.04 -39.49 -0.40 -1.88 16 5 C -0.13 -1.74 9.66 -39.65 -0.38 -2.12 16 6 C -0.06 -0.94 5.92 -104.20 -0.62 -1.55 16 7 C -0.12 -1.90 8.64 36.01 0.31 -1.59 16 8 C -0.01 -0.23 5.87 -105.05 -0.62 -0.85 16 9 C -0.02 -0.30 10.06 -14.66 -0.15 -0.45 16 10 N -0.18 -3.71 7.42 32.16 0.24 -3.47 16 11 N -0.63 -13.67 6.10 -5.88 -0.04 -13.71 16 12 C 0.30 7.41 3.11 -69.08 -0.21 7.19 16 13 H 0.05 1.32 8.12 -51.93 -0.42 0.90 16 14 C -0.15 -3.48 9.37 37.16 0.35 -3.14 16 15 C -0.53 -14.17 8.68 -34.44 -0.30 -14.47 16 16 H 0.06 1.56 7.77 -52.49 -0.41 1.15 16 17 C 0.07 1.83 5.25 -17.82 -0.09 1.74 16 18 N -0.88 -24.62 11.94 55.43 0.66 -23.96 16 19 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.56 8.05 -51.93 -0.42 0.15 16 25 H 0.07 0.77 6.74 -51.93 -0.35 0.42 16 26 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 31 H 0.10 1.87 5.63 -51.93 -0.29 1.58 16 32 H 0.10 1.59 6.57 -52.49 -0.34 1.25 16 33 H 0.37 7.45 8.56 -182.59 -1.56 5.89 16 34 H 0.08 1.99 6.65 -51.93 -0.35 1.64 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -28.01 309.01 -8.93 -36.94 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.66 Total: 5.51 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -2.77 Total: -21.62 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.86 Total: -41.14 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.01 -8.93 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755802618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.182 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds